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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950807
Clone id TST38A01NGRL0009_K24
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_K24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTGCCTACACAGAAAGAAATTGCCCATAGTAGCAGGAACTTCAAATTGGATCTATTGATT
CATTGATCATCTATCAAAAAATGATTGATACTAGGCCTCTTTAGCTACCAATTTGGTTCT
ACTAACAGCTCAATTTGTATGTAAAGTCTCACTTTTGGATCAAATAAAGCCGGCCTTTGA
CGCCCTTGCCCATCATCTCTTGTTTTCTCTCCAACAAGGGGATGTGCAATTGCCTCAGCT
TCCTCTTGGACAATCCTGCCCTTAACCAGAAATGGGTAGATTTGGTACATTCTCTTGCAA
GGAGAATTCAATCATGGTCCCATTCCTTGCCAAGCACAGAAGTTGAGCTTTTCCGTACAA
TAAGTGAGGGATGTATGGACTCTTCGTCCCATGTGCTCTCGCACAAGCGCATTACAGCAG
CTCGAGCTGAAGATGGTTACTCTGATGGGTTGTTGGAAAAATGTGGAATTCATGTTATCA
GAAAGAGAAGACCACTTGTGCAAGGTGCCAATGGTAATAATATAGGATATGCACCGGCAC
ATGCCAACGACGCAGATGATGCTAATGATGTTCGTTATAATCAAGAGTCAGGAAGCAAAG
AGCAAATTGATGCTCAAATGAATACTATGCCTGATCATAATACTCATGCTGTAGATGACA
ACA
■■Homology search results ■■ -
sp_hit_id Q5UQ50
Definition sp|Q5UQ50|COLL6_MIMIV Collagen-like protein 6 OS=Acanthamoeba polyphaga mimivirus
Align length 76
Score (bit) 30.4
E-value 8.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950807|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_K24, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5UQ50|COLL6_MIMIV Collagen-like protein 6 OS=Acanthamoeba po...    30   8.8  

>sp|Q5UQ50|COLL6_MIMIV Collagen-like protein 6 OS=Acanthamoeba
            polyphaga mimivirus GN=MIMI_L668 PE=4 SV=1
          Length = 1387

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +1

Query: 88   ILGLFSYQFGSTNSSICM*SLTFGSNKAGL*RPCPSSLVFSP--TRGCAIASASSWTILP 261
            +L   S+ FG  N+++   S + G          P S+ FS   T G  + + S+ TI  
Sbjct: 1221 VLANGSFAFGRNNTTVSENSFSLGYGARSY---MPGSMAFSSFATSGNPLRAGSAQTIKV 1277

Query: 262  LTRNG*IWYILLQGEF 309
            LTRN    ++L  G F
Sbjct: 1278 LTRNLNTEFVLADGNF 1293
tr_hit_id B1FHI0
Definition tr|B1FHI0|B1FHI0_9BURK Aspartate transaminase OS=Burkholderia ambifaria IOP40-10
Align length 101
Score (bit) 39.7
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950807|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_K24, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1FHI0|B1FHI0_9BURK Aspartate transaminase OS=Burkholderia am...    40   0.17 
tr|B1Z3B7|B1Z3B7_BURA4 Aspartate transaminase OS=Burkholderia am...    39   0.29 
tr|B1T6K0|B1T6K0_9BURK Aspartate transaminase OS=Burkholderia am...    38   0.64 
tr|B5JZK8|B5JZK8_9RHOB Putative uncharacterized protein OS=Octad...    37   0.83 
tr|A5WBZ3|A5WBZ3_PSYWF Aromatic amino acid aminotransferase OS=P...    37   1.4  
tr|Q0B960|Q0B960_BURCM Aminotransferase OS=Burkholderia ambifari...    36   1.9  
tr|Q5K7X5|Q5K7X5_CRYNE Aspartate aminotransferase OS=Cryptococcu...    36   1.9  
tr|Q1BN99|Q1BN99_BURCA Aminotransferase OS=Burkholderia cenocepa...    36   2.4  
tr|B4EJ31|B4EJ31_BURCJ Aromatic amino acid aminotransferase OS=B...    36   2.4  
tr|B1K5U3|B1K5U3_BURCC Aspartate transaminase OS=Burkholderia ce...    36   2.4  
tr|A0B0A8|A0B0A8_BURCH Aminotransferase OS=Burkholderia cenocepa...    36   2.4  
tr|A2VYY9|A2VYY9_9BURK Aminotransferase, class I and II OS=Burkh...    36   2.4  
tr|A9AKH6|A9AKH6_BURM1 Aspartate transaminase (Aromatic amino ac...    35   3.2  
tr|B2G4Q6|B2G4Q6_ZYGRO Cytochrome B pre-mRNA-processing protein ...    35   3.2  
tr|A3LVA9|A3LVA9_PICST 3',5'-cyclic-nucleotide phosphodiesterase...    35   3.2  
tr|A1DIJ9|A1DIJ9_NEOFI Predicted protein OS=Neosartorya fischeri...    35   3.2  
tr|B4EE93|B4EE93_BURCJ Putative uncharacterized protein OS=Burkh...    35   4.1  
tr|A2WEU6|A2WEU6_9BURK Aspartate transaminase OS=Burkholderia do...    35   4.1  
tr|A3KQL8|A3KQL8_DANRE Novel protein similar to vertebrate pherm...    35   5.4  
tr|A7RF09|A7RF09_NEMVE Predicted protein (Fragment) OS=Nematoste...    35   5.5  
tr|A4JNI6|A4JNI6_BURVG Aminotransferase OS=Burkholderia vietnami...    34   9.2  
tr|Q9YVK9|Q9YVK9_MSEPV ORF MSV234 hypthetical protein OS=Melanop...    34   9.3  

>tr|B1FHI0|B1FHI0_9BURK Aspartate transaminase OS=Burkholderia
           ambifaria IOP40-10 GN=BamIOP4010DRAFT_3490 PE=3 SV=1
          Length = 400

 Score = 39.7 bits (91), Expect = 0.17
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +LD PAL Q+W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLDTPALRQQWEEELAAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTESQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|B1Z3B7|B1Z3B7_BURA4 Aspartate transaminase OS=Burkholderia
           ambifaria (strain MC40-6) GN=BamMC406_4233 PE=4 SV=1
          Length = 400

 Score = 38.9 bits (89), Expect = 0.29
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDS------SSHVLSH 404
           +LD PAL Q+W + + ++ RRI             + ++I +G  D       + +V   
Sbjct: 297 VLDTPALRQQWEEELAAMCRRI-----------ARMRQSIHDGLRDHVGGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTEAQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|B1T6K0|B1T6K0_9BURK Aspartate transaminase OS=Burkholderia
           ambifaria MEX-5 GN=BamMEX5DRAFT_3416 PE=4 SV=1
          Length = 400

 Score = 37.7 bits (86), Expect = 0.64
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +L+ PAL Q+W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLNTPALRQQWEEELAAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTESQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|B5JZK8|B5JZK8_9RHOB Putative uncharacterized protein
           OS=Octadecabacter antarcticus 238 GN=OA238_2332 PE=4
           SV=1
          Length = 526

 Score = 37.4 bits (85), Expect = 0.83
 Identities = 30/125 (24%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
 Frame = +3

Query: 168 SRPLTPLP-IISCFLSNKGMCNCLSFLLDNP-----ALNQKWVDLVHSLARRIQSWSHSL 329
           SR   P+P +I   L N G     ++ +D       A ++  + ++  +    Q   HSL
Sbjct: 400 SRRYIPVPDVIKSMLGNGGTGRLFNYRIDTEGKSENAASKSLMPIIRQVTSHPQKAVHSL 459

Query: 330 PSTEVELFRTISEGCMDSSSHVLSHKRITAARAEDGYSDGLLEKCGIHVIRK-RRPLVQG 506
             T ++L R + +   +    +  HK+       DGY +G   K  +H+I K   P +  
Sbjct: 460 RGTFIDLVRELGDVDSEDRKFITGHKQ--GDVGGDGYGEGPSMKKRLHIINKVEHPWLTS 517

Query: 507 ANGNN 521
           A  N+
Sbjct: 518 AFANS 522


>tr|A5WBZ3|A5WBZ3_PSYWF Aromatic amino acid aminotransferase
           OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_0225
           PE=3 SV=1
          Length = 398

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 25/99 (25%), Positives = 48/99 (48%)
 Frame = +3

Query: 234 LSFLLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSSHVLSHKRI 413
           +  ++++ AL+++WVD V+ +  RI++    L S         +   + + + + S   +
Sbjct: 294 VDIVMNDEALHKQWVDEVYGMRDRIKAMRLKLKSVLETKVPGRNFDYLTTQNGMFSFTGL 353

Query: 414 TAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIGY 530
           T  + E      L  + GI+++   R  V G NGNNI Y
Sbjct: 354 TPEQVEC-----LKTEFGIYMVSNSRMCVAGLNGNNIDY 387


>tr|Q0B960|Q0B960_BURCM Aminotransferase OS=Burkholderia ambifaria
           (strain ATCC BAA-244 / AMMD) GN=Bamb_3759 PE=3 SV=1
          Length = 400

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +L+ PAL ++W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLNTPALRKQWEEELAAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTEAQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|Q5K7X5|Q5K7X5_CRYNE Aspartate aminotransferase OS=Cryptococcus
           neoformans GN=CNBM0840 PE=3 SV=1
          Length = 453

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 30/99 (30%), Positives = 45/99 (45%)
 Frame = +3

Query: 234 LSFLLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSSHVLSHKRI 413
           +S +L +P L ++W+  V  +A RI      L +  VEL      G + S   + S    
Sbjct: 347 VSTILGSPELTKEWLVEVKGMADRIIEMRERLYNKLVELDTPGEWGHIKSQIGMFS---F 403

Query: 414 TAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIGY 530
           T  + E    D L EK  I++ R  R  + G N NN+ Y
Sbjct: 404 TGLKPEQ--VDKLAEKASIYLTRDGRISMAGLNSNNVDY 440


>tr|Q1BN99|Q1BN99_BURCA Aminotransferase OS=Burkholderia cenocepacia
           (strain AU 1054) GN=Bcen_4017 PE=3 SV=1
          Length = 400

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +L  PAL ++W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLGTPALRKQWEEELSAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTESQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|B4EJ31|B4EJ31_BURCJ Aromatic amino acid aminotransferase
           OS=Burkholderia cepacia (strain J2315 / LMG 16656)
           GN=tyrB PE=4 SV=1
          Length = 400

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +L  PAL ++W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLGTPALRKQWEEELSAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTESQVDALREVHGVYILRSGRMCVAGLNDSNVG 386


>tr|B1K5U3|B1K5U3_BURCC Aspartate transaminase OS=Burkholderia
           cenocepacia (strain MC0-3) GN=Bcenmc03_6004 PE=3 SV=1
          Length = 400

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 6/101 (5%)
 Frame = +3

Query: 243 LLDNPALNQKWVDLVHSLARRIQSWSHSLPSTEVELFRTISEGCMDSSS------HVLSH 404
           +L  PAL ++W + + ++ RRI             + ++I +G  D  S      +V   
Sbjct: 297 VLGTPALRKQWEEELSAMCRRI-----------ARMRQSIHDGLRDHVSGEALTRYVKQR 345

Query: 405 KRITAARAEDGYSDGLLEKCGIHVIRKRRPLVQGANGNNIG 527
              T     +   D L E  G++++R  R  V G N +N+G
Sbjct: 346 GMFTYTGLTESQVDALREVHGVYILRSGRMCVAGLNDSNVG 386