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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950813
Clone id TST38A01NGRL0009_L06
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CTCCATTATCCAAGAACAAGCTGCCCAATTGGCCAGAGATGCACATCTCAAGGTAGCTGC
TGCAGAGACTACTGTTGCTGAAGCCGCCGCCACCTTAGAAGAGAGAATTAAATCTGCTGC
TCTTGATACTGCTAACACTCTTATGAAAGAGACTAGGGATGCCATTGAGAAGTCTTTTGC
TGAATGGGAAGCAGCCAAAGATAAAGCCTATAAGTCAGAGCTTGCCCTGTTTCAGAAAAT
GCAAGCTCTGGATGACATGGTTCTGAAGGAGGCATCTGCACTTGGCTTGCACCAGGCAAA
CTCTAGCCTGAAGCTTCAGCTACAAGCTGCTACTAGTGAGATTCAGAGGCTTGAAGCCCA
AGTTAAAGCTGTCTCTGTGAGGGCTGAAGCAGCCGAGTTACGCGCCTTGGCAGCTGATGA
AGCTCTCAAAAACTTCCAAGAAATGGCTGATCGCAATGCACAGGAGCACGAAGAGAGTGC
AAAAAGAGCATTAGAGGCCCTCAAGCTTGCGGGTGCCACTCGCTTAGAAGCCGCCCGGGC
AGCATTCAAAGCTGATATTGATGCCCTTCAGGCTGCATTAAATACGGTTCACAAAGCAGA
GAAGTCACAGGAACAAGCATACGCAAGAAGATATCAGGCCTTGGAGCGGTCCCTAGCTTC
AAGCGAAGCATTGGCAA
■■Homology search results ■■ -
sp_hit_id Q6NRC9
Definition sp|Q6NRC9|LRCC1_XENLA Leucine-rich repeat and coiled-coil domain-containing protein 1 OS=Xenopus laevis
Align length 88
Score (bit) 34.3
E-value 0.62
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950813|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L06, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NRC9|LRCC1_XENLA Leucine-rich repeat and coiled-coil domain...    34   0.62 
sp|Q9HGL2|YHLA_SCHPO Uncharacterized calcium-binding protein C80...    32   2.4  
sp|P34562|YNP9_CAEEL GRIP and coiled-coil domain-containing prot...    31   6.9  
sp|P26168|BCHE_RHOCA Anaerobic magnesium-protoporphyrin IX monom...    31   6.9  
sp|Q7L2Z9|CENPQ_HUMAN Centromere protein Q OS=Homo sapiens GN=CE...    30   9.0  

>sp|Q6NRC9|LRCC1_XENLA Leucine-rich repeat and coiled-coil
            domain-containing protein 1 OS=Xenopus laevis GN=lrrcc1
            PE=2 SV=1
          Length = 1030

 Score = 34.3 bits (77), Expect = 0.62
 Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
 Frame = +2

Query: 122  LDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKE-ASALGLHQA 298
            L+T    MKE  DA E    E    +DK+ + +  + +K++++DD   ++  S L  HQA
Sbjct: 915  LETQVRQMKENFDAKENKLIE---ERDKSLQCQKVITEKLRSVDDAFRRQLESVLSAHQA 971

Query: 299  N-----SSLKLQLQAATSEIQRLEAQVK 367
                  S  + +++AA   + ++E +++
Sbjct: 972  ELIKLASDKQKEIEAANERVYQVEEEMR 999


>sp|Q9HGL2|YHLA_SCHPO Uncharacterized calcium-binding protein
           C800.10c OS=Schizosaccharomyces pombe GN=SPBC800.10c
           PE=2 SV=1
          Length = 1116

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 28/93 (30%), Positives = 41/93 (44%)
 Frame = +2

Query: 98  EERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEAS 277
           E  I  A L+      K+  + +E+  AE EAAK+    S  ++ Q    + D   KE +
Sbjct: 574 EYSILEATLNALQKQNKQKGEVLEQVVAESEAAKNMVESSNASIQQLKSEVAD---KEQT 630

Query: 278 ALGLHQANSSLKLQLQAATSEIQRLEAQVKAVS 376
              LH       LQL   T  +  L+ + KAVS
Sbjct: 631 LAQLH-------LQLDEMTQRLVSLDEESKAVS 656


>sp|P34562|YNP9_CAEEL GRIP and coiled-coil domain-containing protein
           T05G5.9 OS=Caenorhabditis elegans GN=T05G5.9 PE=4 SV=3
          Length = 660

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +2

Query: 122 LDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQAN 301
           LD    LM+ +RD  E+   + E AK+K              +D ++  E         N
Sbjct: 376 LDEELRLMRSSRDTAEQKIKDIEIAKEK--------------VDHLLQNERQR--SENEN 419

Query: 302 SSLKLQLQAATSEIQRLEAQVK 367
            SLK +L +AT +I  LE +++
Sbjct: 420 GSLKSKLSSATKQIHSLEKELQ 441


>sp|P26168|BCHE_RHOCA Anaerobic magnesium-protoporphyrin IX
           monomethyl ester [oxidative] cyclase OS=Rhodobacter
           capsulatus GN=bchE PE=3 SV=1
          Length = 575

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 21/77 (27%), Positives = 33/77 (42%)
 Frame = +2

Query: 125 DTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQANS 304
           DT +    ETR   E   A+WEAA D++ K +         + D      +A  +  A++
Sbjct: 481 DTVDFHFDETRKIAEAQVADWEAAADRSRKHKERQEALRAQMKDRAADRNTANFVMPADA 540

Query: 305 SLKLQLQAATSEIQRLE 355
             +  L A T E +  E
Sbjct: 541 EDEFDLSAETHEARSAE 557


>sp|Q7L2Z9|CENPQ_HUMAN Centromere protein Q OS=Homo sapiens GN=CENPQ
           PE=1 SV=1
          Length = 268

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 24/65 (36%), Positives = 33/65 (50%)
 Frame = +2

Query: 173 SFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQANSSLKLQLQAATSEIQRL 352
           S    E A+DKA +  LAL Q  + +D MV       G  Q   SLK ++Q   SE++  
Sbjct: 139 SLLNMERARDKANEEGLALLQ--EEIDKMVETTELMTGNIQ---SLKNKIQILASEVEEE 193

Query: 353 EAQVK 367
           E +VK
Sbjct: 194 EERVK 198
tr_hit_id A7PA92
Definition tr|A7PA92|A7PA92_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 222
Score (bit) 76.3
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950813|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L06, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PA92|A7PA92_VITVI Chromosome chr14 scaffold_9, whole genome...    76   2e-12
tr|A9TVN8|A9TVN8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.39 
tr|Q2GV15|Q2GV15_CHAGB Putative uncharacterized protein OS=Chaet...    39   0.39 
tr|A3CLF3|A3CLF3_STRSV Putative uncharacterized protein OS=Strep...    37   1.5  
tr|A7R2D5|A7R2D5_VITVI Chromosome undetermined scaffold_420, who...    37   1.5  
tr|A7R222|A7R222_VITVI Chromosome undetermined scaffold_394, who...    37   1.5  
tr|Q4DPY9|Q4DPY9_TRYCR Putative uncharacterized protein OS=Trypa...    36   2.6  
tr|B5JT58|B5JT58_9GAMM Membrane-bound metallopeptidase OS=gamma ...    35   3.3  
tr|Q389U3|Q389U3_9TRYP Structural maintenance of chromosome 2, p...    35   4.4  
tr|B6MUX9|B6MUX9_BRAFL Putative uncharacterized protein OS=Branc...    35   4.4  
tr|A7F2U1|A7F2U1_SCLS1 Putative uncharacterized protein OS=Scler...    35   4.4  
tr|B0V3A3|B0V3A3_DANRE Novel protein (Fragment) OS=Danio rerio G...    35   5.7  
tr|B8FC37|B8FC37_9DELT Putative uncharacterized protein OS=Desul...    35   5.7  
tr|B6WNE7|B6WNE7_9BACE Putative uncharacterized protein OS=Bacte...    35   5.7  
tr|Q01CM2|Q01CM2_OSTTA SSIIIa (ISS) OS=Ostreococcus tauri GN=Ot0...    35   5.7  
tr|A5PK17|A5PK17_BOVIN EVI5L protein OS=Bos taurus GN=EVI5L PE=2...    35   5.7  
tr|Q0CXP2|Q0CXP2_ASPTN Putative uncharacterized protein OS=Asper...    35   5.7  
tr|Q4DPS7|Q4DPS7_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.4  
tr|B4LDI8|B4LDI8_DROVI GJ12401 OS=Drosophila virilis GN=GJ12401 ...    34   7.4  
tr|Q5AFI3|Q5AFI3_CANAL Putative uncharacterized protein (Putativ...    34   7.4  
tr|Q5A0Z6|Q5A0Z6_CANAL Putative uncharacterized protein OS=Candi...    34   7.4  
tr|Q4TGE2|Q4TGE2_TETNG Chromosome undetermined SCAF3754, whole g...    34   9.7  
tr|A9RUL4|A9RUL4_PHYPA Predicted protein OS=Physcomitrella paten...    34   9.7  
tr|A7T385|A7T385_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   9.7  
tr|A7RH12|A7RH12_NEMVE Predicted protein OS=Nematostella vectens...    34   9.7  

>tr|A7PA92|A7PA92_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038019001
           PE=4 SV=1
          Length = 851

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 57/222 (25%), Positives = 100/222 (45%), Gaps = 1/222 (0%)
 Frame = +2

Query: 8   IQEQAAQLARDAHLKXXXXXXXXXXXXXXLEERIKSAALDTANTLMKETRDAIEKSFAEW 187
           I +  A +  DA L+              +E++I++ A  T   ++++++ AI+K+    
Sbjct: 76  IHQATAHILEDAQLRVSAAETSAAQAVYQIEDQIRNTAERTILAVVEQSKIAIDKALVVA 135

Query: 188 EAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQANSSLKLQLQAATSEIQRLEAQVK 367
           E A D A KS  A        D++   ++  + L  A ++L+ QL    SEI +L+ +++
Sbjct: 136 ERAGDYATKSVAAFTDATSPADEIAAIQSQNIELQNATNNLESQLLLTRSEIDKLKLELE 195

Query: 368 AVSVXXXXXXXXXXXXXXXXKNFQE-MADRNAQEHEESAKRALEALKLXXXXXXXXXXXX 544
                                 FQE M ++N Q+ EE  KR LE +K             
Sbjct: 196 QAHAKANASELRANAAEKALLEFQESMKEQNLQQQEEM-KRLLEKVKKDAAEKKKAASKA 254

Query: 545 XXXXXXXLQAALNTVHKAEKSQEQAYARRYQALERSLASSEA 670
                  ++AA+    +   S+++AY+RR +AL RSL +SEA
Sbjct: 255 FKLELESIKAAIEAAKETAHSKDEAYSRRCEALHRSLRASEA 296


>tr|A9TVN8|A9TVN8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_97889 PE=4 SV=1
          Length = 1263

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
 Frame = +2

Query: 122 LDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQAN 301
           ++  + ++ +  D +EK+   +  AKDKA K+++A+  + +  D M   + S   +++AN
Sbjct: 270 IEQIHAIVTKVEDVLEKAQEAFHIAKDKAKKTDIAIHHRKRVRDMMDQAKKSMQAINEAN 329

Query: 302 SSLKLQLQAA---------TSEIQRLEAQVKAV 373
            S K  L+ A           E+++ E Q++ +
Sbjct: 330 ISAKKALELAHTLLKSTPTLDELKKEEKQIQPI 362


>tr|Q2GV15|Q2GV15_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_08189 PE=4 SV=1
          Length = 1351

 Score = 38.5 bits (88), Expect = 0.39
 Identities = 30/116 (25%), Positives = 51/116 (43%)
 Frame = +2

Query: 143 MKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQANSSLKLQL 322
           +KE +D +    AE +A KDK +  E+ L QK  A++D+  +  +ALG      +L  Q 
Sbjct: 502 IKEMQDTL----AEGDAFKDKLHACEIELAQKESAVEDLREQLDNALGAEDIIETLTEQT 557

Query: 323 QAATSEIQRLEAQVKAVSVXXXXXXXXXXXXXXXXKNFQEMADRNAQEHEESAKRA 490
              + EI+ L+A +  +                  K  Q+  D+      E A++A
Sbjct: 558 MNQSEEIKELKATILDLEELKEVSDELEINHVNNQKEMQDEIDKRDAVIAEQARQA 613


>tr|A3CLF3|A3CLF3_STRSV Putative uncharacterized protein
           OS=Streptococcus sanguinis (strain SK36) GN=SSA_0565
           PE=4 SV=1
          Length = 861

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 27/90 (30%), Positives = 43/90 (47%)
 Frame = +2

Query: 101 ERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASA 280
           E  K A LD A    KE +  +EK+  + EAA   A +S   L    + L+    K A+A
Sbjct: 667 ESDKLAQLDAALNAAKERKTNLEKAVTDAEAALQMAKESLSNLENAEENLEQAKTKLAAA 726

Query: 281 LGLHQANSSLKLQLQAATSEIQRLEAQVKA 370
              +QA  + +   +A  + +  ++AQ KA
Sbjct: 727 QAAYQAALTAQTDQEAKVAVLTAVQAQAKA 756


>tr|A7R2D5|A7R2D5_VITVI Chromosome undetermined scaffold_420, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012976001 PE=3 SV=1
          Length = 791

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +2

Query: 98  EERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLK-EA 274
           EE  K  A+D+  T  KE R A+EK  A       K  + +L   QK+ +L+DM  + + 
Sbjct: 178 EESEKLDAMDSY-TREKEARAAVEKVKASLSEELAKTQQEKLNANQKVTSLNDMYKRLQE 236

Query: 275 SALGLHQANSSLKLQLQAATSEIQRLEAQVKAV 373
               L Q NS L+  L  A    +R+E +  A+
Sbjct: 237 YNTSLQQYNSKLQTDLATANESQKRVEKEKLAI 269


>tr|A7R222|A7R222_VITVI Chromosome undetermined scaffold_394, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00012554001 PE=3 SV=1
          Length = 791

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
 Frame = +2

Query: 98  EERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLK-EA 274
           EE  K  A+D+  T  KE R A+EK  A       K  + +L   QK+ +L+DM  + + 
Sbjct: 178 EESEKLDAMDSY-TREKEARAAVEKVKASLSEELAKTQQEKLNANQKVTSLNDMYKRLQE 236

Query: 275 SALGLHQANSSLKLQLQAATSEIQRLEAQVKAV 373
               L Q NS L+  L  A    +R+E +  A+
Sbjct: 237 YNTSLQQYNSKLQTDLATANESQKRVEKEKLAI 269


>tr|Q4DPY9|Q4DPY9_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509179.160 PE=4 SV=1
          Length = 964

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 24/91 (26%), Positives = 50/91 (54%)
 Frame = +2

Query: 101 ERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASA 280
           ER+K +A+    +L++      EK+  + E  ++   + +L L +KM    ++   EA  
Sbjct: 542 ERVKKSAMREQKSLLERKTSLREKTLKQNEGLRE--LQGQL-LNEKMGIDAEIATLEAKL 598

Query: 281 LGLHQANSSLKLQLQAATSEIQRLEAQVKAV 373
             L QA++  + +LQ  TS ++R+EA+ +++
Sbjct: 599 AKLRQASAEKEAELQDVTSNLRRMEAKQESM 629


>tr|B5JT58|B5JT58_9GAMM Membrane-bound metallopeptidase OS=gamma
           proteobacterium HTCC5015 GN=GP5015_2268 PE=4 SV=1
          Length = 363

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 25/75 (33%), Positives = 39/75 (52%)
 Frame = +2

Query: 143 MKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEASALGLHQANSSLKLQL 322
           ++E R+ I     + E A++    +E ALF+  QAL ++  K AS  G   AN S   +L
Sbjct: 13  LEEVREEINDLMEDIEDAREDKSDTEQALFKAEQALGNVRKKLASLNGDIDANKSRLNRL 72

Query: 323 QAATSEIQRLEAQVK 367
           +   S++QR  A  K
Sbjct: 73  ETQQSDLQRELASQK 87


>tr|Q389U3|Q389U3_9TRYP Structural maintenance of chromosome 2,
           putative OS=Trypanosoma brucei GN=Tb10.406.0600 PE=4
           SV=1
          Length = 1175

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
 Frame = +2

Query: 98  EERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEAS 277
           E R +   L T  T +     A ++    + + +D+  +      + MQ    +     +
Sbjct: 243 EHRKRRGELSTRRTSLLSDTAAAKEQLRSFPSVEDETTQ------RLMQLQSTLAAPAEA 296

Query: 278 ALGLHQANSSLKLQLQAATSEIQRLEAQVKAVSVXXXXXXXXXXXXXXXXKNFQ------ 439
           A+ LH+  S+LKLQL    ++++RL+  +K ++                 + F+      
Sbjct: 297 AMALHEEESTLKLQLAREEAQLERLDKVLKKLADASRKLEEEKQQQKSRAQQFEAYQEQR 356

Query: 440 EMADRNAQEHEESAKRALEALKL 508
           E   RN  E +E+  +   +L+L
Sbjct: 357 EKLIRNIHEQKENIAKLKRSLQL 379


>tr|B6MUX9|B6MUX9_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_87034 PE=4 SV=1
          Length = 1880

 Score = 35.0 bits (79), Expect = 4.4
 Identities = 44/191 (23%), Positives = 73/191 (38%), Gaps = 5/191 (2%)
 Frame = +2

Query: 98   EERIKSAALDTANTLMKETRDAIEKSFAEWEAAKDKAYKSELALFQKMQALDDMVLKEAS 277
            E R     L+   + +K+    ++ S+   +  K  A  SEL+   K+Q   + V +E +
Sbjct: 1145 ELRASRVVLEGELSGLKQQLHELQVSYERVKEEKT-ALSSELSS-TKLQVSYERVKEEKT 1202

Query: 278  ALGLHQAN-----SSLKLQLQAATSEIQRLEAQVKAVSVXXXXXXXXXXXXXXXXKNFQE 442
            AL    ++     S L+LQL+    E   LE Q+K + V                   Q+
Sbjct: 1203 ALSSELSSTRLQFSQLQLQLEGVIQERSHLEEQLKDMQVKQHNQSAVA----------QK 1252

Query: 443  MADRNAQEHEESAKRALEALKLXXXXXXXXXXXXXXXXXXXLQAALNTVHKAEKSQEQAY 622
            MAD     H+E  K+  + LKL                       LNT H+  ++++ +Y
Sbjct: 1253 MADLQTSSHQELGKQKAKVLKLG--------------------TELNTAHQELQARQSSY 1292

Query: 623  ARRYQALERSL 655
                  L   L
Sbjct: 1293 ENTVSLLTSKL 1303