DK950817
Clone id TST38A01NGRL0009_L10
Library
Length 671
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
ATTAGATTTTTAGCAGCAAGTTCCAAAAAACACAGAAAATTGTAACTCCCTAATTGCAAC
CTAGTTAAGCCAAGATGTAAGCTATTTTTGCCTAGTTATTGGCTGTCCTATAGAGAGTCT
ACCTGATCTGTGTTGTGCGAACTTCAAGTTTCCTTGAGACTCTCTAAAAATAGCTAGGGC
AAGTGTGCGAAGATGCCAAATATGACTTCCTTCGCTGAGGAGATCACTTCTACCCATTTT
GTTGGTGTGTTGCTATTCTTGTGAGTAATTGTATGCTTTCTGAAGAGAGAGTTGAGGACA
GGCCCGTGGGAAGCTTCACACAATAATTTTTCTCTTATGATACTAGTCTGTATAAAGGCT
TGTAAAATGTTTACAATGCTTTACCCTAAACCTAACTCTAAAGTAATTGTTTTTTTGTAT
TGTTAATTTCCAGGGTTTGCTGAAGGACATCACATTCATGATCTCAGGCCAATTTGTAAA
ATCCATTTTGGAAGATATCTTGAATGTTTTTGGCTTCTACATCAAGCTGCTTATGAGGGC
TTTGCCTCATCTGGATGAGCCGGAGGGTGAGGTTCAAATGGATGATGGTATGAAGCTGGT
CCCTGCAGAAAGTGAAACACAGCAGTTTGTCATTCTGGGTAACGCTGCGGCTTTAGCGGA
TGAACTTCTCC
■■Homology search results ■■ -
sp_hit_id Q46Z20
Definition sp|Q46Z20|RECO_RALEJ DNA repair protein recO OS=Ralstonia eutropha (strain JMP134)
Align length 29
Score (bit) 32.3
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950817|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L10, 5'
(671 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q46Z20|RECO_RALEJ DNA repair protein recO OS=Ralstonia eutrop... 32 2.3

>sp|Q46Z20|RECO_RALEJ DNA repair protein recO OS=Ralstonia eutropha
(strain JMP134) GN=recO PE=3 SV=1
Length = 291

Score = 32.3 bits (72), Expect = 2.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2

Query: 536 RALPHLDEPEGEVQMDDGMKLVPAESETQ 622
RALP + + G MD M++VPA SET+
Sbjct: 28 RALPGMADAAGRAMMDRAMRIVPARSETR 56


tr_hit_id B8LPY0
Definition tr|B8LPY0|B8LPY0_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 80
Score (bit) 61.2
E-value 6.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950817|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L10, 5'
(671 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LPY0|B8LPY0_PICSI Putative uncharacterized protein OS=Picea... 61 6e-08
tr|A9TZY6|A9TZY6_PHYPA Predicted protein OS=Physcomitrella paten... 59 4e-07
tr|A9SLE4|A9SLE4_PHYPA Predicted protein OS=Physcomitrella paten... 57 1e-06
tr|Q9SY60|Q9SY60_ARATH F14N23.6 OS=Arabidopsis thaliana GN=At1g1... 54 7e-06
tr|Q940L2|Q940L2_ARATH At1g10180/F14N23_6 OS=Arabidopsis thalian... 54 7e-06
tr|A9TL23|A9TL23_PHYPA Predicted protein (Fragment) OS=Physcomit... 53 2e-05
tr|A7PVL8|A7PVL8_VITVI Chromosome chr9 scaffold_33, whole genome... 53 2e-05
tr|Q6Z371|Q6Z371_ORYSJ Os07g0200000 protein OS=Oryza sativa subs... 52 3e-05
tr|A2YJ70|A2YJ70_ORYSI Putative uncharacterized protein OS=Oryza... 52 3e-05
tr|A7Q2N0|A7Q2N0_VITVI Chromosome chr1 scaffold_46, whole genome... 51 8e-05
tr|A5AJ65|A5AJ65_VITVI Putative uncharacterized protein OS=Vitis... 51 8e-05
tr|Q9LTB0|Q9LTB0_ARATH Gb|AAD32890.1 (AT5g49830/K21G20_4) OS=Ara... 49 3e-04
tr|A9TW88|A9TW88_PHYPA Predicted protein OS=Physcomitrella paten... 48 6e-04
tr|A9TL91|A9TL91_PHYPA Predicted protein (Fragment) OS=Physcomit... 47 0.001
tr|Q84SL6|Q84SL6_ORYSJ Os07g0568000 protein OS=Oryza sativa subs... 42 0.035
tr|B8B7H7|B8B7H7_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.035
tr|A2Q297|A2Q297_MEDTR Putative uncharacterized protein OS=Medic... 40 0.13
tr|A7P2S0|A7P2S0_VITVI Chromosome chr1 scaffold_5, whole genome ... 36 2.5
tr|A5ALR9|A5ALR9_VITVI Putative uncharacterized protein OS=Vitis... 36 2.5

>tr|B8LPY0|B8LPY0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 536

Score = 61.2 bits (147), Expect = 6e-08
Identities = 33/80 (41%), Positives = 49/80 (61%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVPAE 610
Q +D+ ++S Q L+ + VF Y+ LL++ALP E +G +++ + AE
Sbjct: 198 QEFFEDVAPLLSMQLGGLTLDGLAQVFNSYVSLLIKALPGSIEEDGSMEVSGNKIVRLAE 257

Query: 611 SETQQFVILGNAAALADELL 670
+ETQQ +LGNAAALADELL
Sbjct: 258 TETQQIALLGNAAALADELL 277


>tr|A9TZY6|A9TZY6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_153299 PE=4 SV=1
Length = 800

Score = 58.5 bits (140), Expect = 4e-07
Identities = 33/81 (40%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPE-GEVQMDDGMKLVPA 607
Q L+D+ +IS Q L+ + +F Y+ +L++A+P L E E G V+ K+ PA
Sbjct: 457 QDFLEDVAPLISMQLGGPTLDGLSMLFDQYVDMLIKAVPSLGEDEEGGVESGTNRKVRPA 516

Query: 608 ESETQQFVILGNAAALADELL 670
+E+QQ +LGN +ALADELL
Sbjct: 517 TTESQQLALLGNVSALADELL 537


>tr|A9SLE4|A9SLE4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_131734 PE=4 SV=1
Length = 797

Score = 57.0 bits (136), Expect = 1e-06
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPE-GEVQMDDGMKLVPA 607
Q L+D+ +IS Q L+ + +F Y+ +LM+A+P E E G + K+ PA
Sbjct: 457 QDFLEDVAPLISMQLGGPTLDGLSMLFDSYVDMLMKAVPSPGEDEEGGAENGGDRKVRPA 516

Query: 608 ESETQQFVILGNAAALADELL 670
+E+QQ +LGNA+ALADELL
Sbjct: 517 ATESQQLALLGNASALADELL 537


>tr|Q9SY60|Q9SY60_ARATH F14N23.6 OS=Arabidopsis thaliana
GN=At1g10180 PE=4 SV=1
Length = 769

Score = 54.3 bits (129), Expect = 7e-06
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +2

Query: 416 CIVNF----QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMD 583
C + F Q +L+ +T ++ F +S+L IL ++ YI L++ALP + +G ++
Sbjct: 394 CSIRFMQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQ 453

Query: 584 DGMKLVPAESETQQFVILGNAAALADELL 670
D L AE++++Q +LG A + DELL
Sbjct: 454 DNTVLARAETDSEQLALLGAAFTILDELL 482


>tr|Q940L2|Q940L2_ARATH At1g10180/F14N23_6 OS=Arabidopsis thaliana
PE=2 SV=1
Length = 769

Score = 54.3 bits (129), Expect = 7e-06
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = +2

Query: 416 CIVNF----QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMD 583
C + F Q +L+ +T ++ F +S+L IL ++ YI L++ALP + +G ++
Sbjct: 394 CSIRFMQIVQDILEQLTHLVVLHFGESVLTRILQLYDKYIDFLIKALPGHSDEDGLPELQ 453

Query: 584 DGMKLVPAESETQQFVILGNAAALADELL 670
D L AE++++Q +LG A + DELL
Sbjct: 454 DNTVLARAETDSEQLALLGAAFTILDELL 482


>tr|A9TL23|A9TL23_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_223312 PE=4 SV=1
Length = 632

Score = 53.1 bits (126), Expect = 2e-05
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVPAE 610
Q L+D ++S Q + +L+ ++ +F Y++LL++ALP EV+ + K+ A
Sbjct: 360 QDFLEDYPALVSIQLGQGVLDCVVEIFEQYVQLLVKALPGQ-----EVEEEGKRKVRIAA 414

Query: 611 SETQQFVILGNAAALADELL 670
SE QQ +LGNAAAL DEL+
Sbjct: 415 SEDQQLSLLGNAAALVDELV 434


>tr|A7PVL8|A7PVL8_VITVI Chromosome chr9 scaffold_33, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025272001
PE=4 SV=1
Length = 769

Score = 53.1 bits (126), Expect = 2e-05
Identities = 30/80 (37%), Positives = 44/80 (55%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVPAE 610
Q +D+ ++S Q LE + VF Y+ LL++ALP E E + + AE
Sbjct: 435 QDFFEDVGPLLSMQLGGQTLEGLFQVFNSYVNLLIKALPGSMEEEANFEGSGNKIVRMAE 494

Query: 611 SETQQFVILGNAAALADELL 670
+E QQ +L NA++LADELL
Sbjct: 495 TEEQQIALLANASSLADELL 514


>tr|Q6Z371|Q6Z371_ORYSJ Os07g0200000 protein OS=Oryza sativa subsp.
japonica GN=P0519E02.19 PE=4 SV=1
Length = 788

Score = 52.4 bits (124), Expect = 3e-05
Identities = 30/80 (37%), Positives = 44/80 (55%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVPAE 610
Q +D+ ++S Q S ++DI +F Y+ LL+ ALP E E + + AE
Sbjct: 456 QEFFEDVAPLLSLQLGGSTMDDITKIFNSYVNLLISALPGSMEDEANIDGLGNKIVRMAE 515

Query: 611 SETQQFVILGNAAALADELL 670
SE QQ +L NA+ LA+ELL
Sbjct: 516 SEEQQLALLANASLLAEELL 535


>tr|A2YJ70|A2YJ70_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25278 PE=4 SV=1
Length = 786

Score = 52.4 bits (124), Expect = 3e-05
Identities = 30/80 (37%), Positives = 44/80 (55%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVPAE 610
Q +D+ ++S Q S ++DI +F Y+ LL+ ALP E E + + AE
Sbjct: 454 QEFFEDVAPLLSLQLGGSTMDDITKIFNSYVNLLISALPGSMEDEANIDGLGNKIVRMAE 513

Query: 611 SETQQFVILGNAAALADELL 670
SE QQ +L NA+ LA+ELL
Sbjct: 514 SEEQQLALLANASLLAEELL 533


>tr|A7Q2N0|A7Q2N0_VITVI Chromosome chr1 scaffold_46, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00028950001
PE=4 SV=1
Length = 766

Score = 50.8 bits (120), Expect = 8e-05
Identities = 35/81 (43%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Frame = +2

Query: 431 QGLLKDITFMISGQFVKSILEDILNVFGFYIKLLMRALPHLDEPEGEVQMDDGMKLVP-A 607
Q +++ + S Q S LE +L VF YI LL+ ALP E E + G K+V A
Sbjct: 440 QEFFEEVGPLESLQLGGSTLEGLLQVFNSYINLLIHALPGTMETEDNLG-GSGHKIVRMA 498

Query: 608 ESETQQFVILGNAAALADELL 670
E+E+QQ +L NA+ LADELL
Sbjct: 499 ETESQQLALLANASMLADELL 519