DK950818 |
Clone id |
TST38A01NGRL0009_L11 |
Library |
TST38 |
Length |
663 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L11. 5' end sequence. |
Accession |
DK950818 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL2760Contig1 |
Sequence |
TGAACTGGTTGACACAGTTGAAGATGTGGAGGATTTTATATCCAGACGAAAAACAAGTCG AAAATCCAGTGAAACAGATGTCATCCTCACATGCCCAGTATCAAAACATGGACTGGAAGA GGGAGAGTCTGAAGTGGAACTGTTAGTCTCTGTTCTCTCTGCGCTCCGCCAGTCAGGCAC ACGCAATGCAGTCTTTTATGCATCTGATCCTATGAGCGGTCACGAATACAATGGGCGCAT GCTTGCCTCAAATACAACAAGCACGAACACGACTTGTGATGATATTTGTGAAACCATAGC AGGTGTTTACGAGGGTATAATTGTGGCTGTTACACTTTTGATTATCTTGATTTCTGGCTT ATGCTGCATGATGGGCATCCACACACCATCGAGGTTTGAGAGCTCCCAAGAATAAGCTGT TCTTGAAGAAATTTGAGGTGGAATTTATGAGTGAAGGCATTGTGACCAGCTAATAAGTGC TTTCAAGAACACTGTAAATTATGGGCATGGGGGGAGGTGTAATAGCTGCCTACTTTCTTT TGTAAGCTCAATTTGTGGTTGGCTATTATTCATTAATGTAGTTGGTGCTTCAAGGCCAGG CATGGGCCTTGACAAGTAGTCCCATGCTTCCGAGGTTATCATTCTTAAACAAGAAGTTTG CTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1QZX1 |
Definition |
sp|Q1QZX1|SYA_CHRSD Alanyl-tRNA synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) |
Align length |
53 |
Score (bit) |
33.5 |
E-value |
1.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P0C9 |
Definition |
tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
142 |
Score (bit) |
67.4 |
E-value |
8.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950818|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_L11, 5' (663 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome ... 67 8e-10 tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis... 67 8e-10 tr|A9RPZ5|A9RPZ5_PHYPA Predicted protein OS=Physcomitrella paten... 60 2e-07 tr|B7FKU1|B7FKU1_MEDTR Putative uncharacterized protein OS=Medic... 58 5e-07 tr|Q93WB8|Q93WB8_ARATH Putative uncharacterized protein At3g1341... 57 8e-07 tr|Q8LFS9|Q8LFS9_ARATH Putative uncharacterized protein (Fragmen... 57 8e-07 tr|Q8H7I0|Q8H7I0_ARATH Putative uncharacterized protein OS=Arabi... 57 8e-07 tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea... 55 3e-06 tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea m... 50 1e-04 tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea m... 50 1e-04 tr|Q2RB32|Q2RB32_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 46 0.002 tr|A2ZAZ8|A2ZAZ8_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002 tr|Q2QYD3|Q2QYD3_ORYSJ Os12g0123900 protein OS=Oryza sativa subs... 45 0.003 tr|B8BLS9|B8BLS9_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003 tr|A9SHC6|A9SHC6_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.034 tr|A3CEI1|A3CEI1_ORYSJ Putative uncharacterized protein OS=Oryza... 35 4.1
>tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024859001 PE=4 SV=1 Length = 315
Score = 67.4 bits (163), Expect = 8e-10 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%) Frame = +2
Query: 17 VEDVEDFIXXXXXXXXXXETDVILTCPVSKHXXXXXXXXXXXXXXXXXA-LRQSGTRNAV 193 + V D++ TD+++ C H + L QSGT+ V Sbjct: 173 LHSVHDYLVSRRKMRPVGPTDLVMFCHGGSHLEELDQRLESEVFSELISSLEQSGTKYTV 232
Query: 194 FYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXX 346 Y SDP +Y R LA CD++C+ + + EG++V + Sbjct: 233 LYVSDPFRSIQYPSYRDLERFLAEGTYGNGSANSTTCDEVCQIKSSLLEGLLVGIVLLII 292
Query: 347 XXSGLCCMMGIHTPSRFESSQE 412 SGLCCMMGI TP+RFE+ Q+ Sbjct: 293 LISGLCCMMGIDTPTRFEAPQD 314
>tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041203 PE=4 SV=1 Length = 315
Score = 67.4 bits (163), Expect = 8e-10 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%) Frame = +2
Query: 17 VEDVEDFIXXXXXXXXXXETDVILTCPVSKHXXXXXXXXXXXXXXXXXA-LRQSGTRNAV 193 + V D++ TD+++ C H + L QSGT+ V Sbjct: 173 LHSVHDYLVSRRKMRPVGPTDLVMFCHGGSHLEELDQRLESEVFSELISSLEQSGTKYTV 232
Query: 194 FYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXX 346 Y SDP +Y R LA CD++C+ + + EG++V + Sbjct: 233 LYVSDPFRSIQYPSYRDLERFLAEGTYGNGSANSTTCDEVCQIKSSLLEGLLVGIVLLII 292
Query: 347 XXSGLCCMMGIHTPSRFESSQE 412 SGLCCMMGI TP+RFE+ Q+ Sbjct: 293 LISGLCCMMGIDTPTRFEAPQD 314
>tr|A9RPZ5|A9RPZ5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160326 PE=4 SV=1 Length = 324
Score = 59.7 bits (143), Expect = 2e-07 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%) Frame = +2
Query: 17 VEDVEDFIXXXXXXXXXXETDVILTC---PVSKHXXXXXXXXXXXXXXXXXALRQSGTRN 187 V D++ +I ETDV++ C + ++ SGT N Sbjct: 185 VADIQGYIFGRKTSRAQGETDVMVICYSPTLHWSTDGVSNSEGIVLEEVLSTVKSSGTSN 244
Query: 188 AVFYASDP-MSGHEYNG---RMLAXXXXXXXXXCDDICETIAGVYEGIIVAVTXXXXXXS 355 Y S+P +S +++G R L CD +C + A + EGI VA T S Sbjct: 245 VAIYFSEPSVSSVKHHGILERHLLEGSGTGSTDCDALCRSRAVILEGIFVAFTLITILVS 304
Query: 356 GLCCMMGIHTPSRFESSQE 412 G+CCM + +P+RFE+++E Sbjct: 305 GICCMKAVKSPARFETAKE 323
>tr|B7FKU1|B7FKU1_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 318
Score = 58.2 bits (139), Expect = 5e-07 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%) Frame = +2
Query: 17 VEDVEDFIXXXXXXXXXXETDVILTC--PVSKHXXXXXXXXXXXXXXXXXALRQSGTRNA 190 ++ V+ ++ +TD+++ C P + ++ +SG + A Sbjct: 176 LQSVQAYLTKRKEESHKGKTDLVVFCNGPQASKNVDSTKSEGEVLSELISSVEESGAKYA 235
Query: 191 VFYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXX 343 V Y SD +Y R LA CD +C+ + + EG++V + Sbjct: 236 VLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQLKSSLLEGLLVGIVLLI 295
Query: 344 XXXSGLCCMMGIHTPSRFESSQE 412 SGLCCMMGI +P+RFE+ QE Sbjct: 296 ILISGLCCMMGIDSPTRFEAPQE 318
>tr|Q93WB8|Q93WB8_ARATH Putative uncharacterized protein At3g13410 OS=Arabidopsis thaliana GN=At3g13410 PE=2 SV=1 Length = 321
Score = 57.4 bits (137), Expect = 8e-07 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Frame = +2
Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319 ++ QSG++ Y SDP Y R LA CD++C+ + + EGI Sbjct: 230 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 289
Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412 +V + SGLCCM GI TP+RFE+ Q+ Sbjct: 290 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 320
>tr|Q8LFS9|Q8LFS9_ARATH Putative uncharacterized protein (Fragment) OS=Arabidopsis thaliana PE=2 SV=1 Length = 203
Score = 57.4 bits (137), Expect = 8e-07 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Frame = +2
Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319 ++ QSG++ Y SDP Y R LA CD++C+ + + EGI Sbjct: 112 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 171
Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412 +V + SGLCCM GI TP+RFE+ Q+ Sbjct: 172 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 202
>tr|Q8H7I0|Q8H7I0_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1 Length = 321
Score = 57.4 bits (137), Expect = 8e-07 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%) Frame = +2
Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319 ++ QSG++ Y SDP Y R LA CD++C+ + + EGI Sbjct: 230 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 289
Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412 +V + SGLCCM GI TP+RFE+ Q+ Sbjct: 290 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 320
>tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 320
Score = 55.5 bits (132), Expect = 3e-06 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Frame = +2
Query: 164 LRQSGTRNAVFYASDP--MSGH----EYNGRMLAXXXXXXXXX---CDDICETIAGVYEG 316 L+Q+G V Y SDP M H + R+++ CD +C++ A + EG Sbjct: 228 LQQAGIIYTVLYTSDPYEMVPHGRFQKLERRLISNDSGNGSASLTYCDGVCKSKASLLEG 287
Query: 317 IIVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412 +V + SGLCCMMGI TP+RFE+ E Sbjct: 288 FLVGLVLLIILLSGLCCMMGIQTPTRFEAPHE 319
>tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 318
Score = 50.1 bits (118), Expect = 1e-04 Identities = 40/124 (32%), Positives = 47/124 (37%), Gaps = 10/124 (8%) Frame = +2
Query: 71 ETDVILTCPVSKHXXXXXXXXXXXXXXXXXALRQSGTRNAVFYASDPMSGHEYN-----G 235 +TDVI+ C L SG + V YAS P E G Sbjct: 194 QTDVIVFCSGGFENPGTAKSEGELLSQLVDLLDLSGAKYTVLYASQPSGLLESPSGLPLG 253
Query: 236 RMLAXXXXXXXXX-----CDDICETIAGVYEGIIVAVTXXXXXXSGLCCMMGIHTPSRFE 400 R LA CD C + + EG V + SGL CMMGI TPSRFE Sbjct: 254 RHLAEKKTNGTKAVQGEKCDGECLVKSSLLEGTFVGIVLLIILISGLMCMMGIDTPSRFE 313
Query: 401 SSQE 412 + QE Sbjct: 314 APQE 317
>tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 315
Score = 50.1 bits (118), Expect = 1e-04 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 11/125 (8%) Frame = +2
Query: 71 ETDVILTCPVSKHXXXXXXXXXXXXXXXXXALRQSGTRNAVFYASDPMSGHEYNG----- 235 +TDVI+ C L+ SG R+ + YAS P SG+ Sbjct: 191 QTDVIVFCSGGFEKLGTTESEGELLSQLVDLLKLSGARHTILYASQP-SGYLLENPSGSP 249
Query: 236 --RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXXXXSGLCCMMGIHTPSRF 397 R LA CD C + + EG V + SGL CMMGI TPS+F Sbjct: 250 VARHLAERTNGTKTGLLSKCDGECLVKSTLLEGTFVGIVLLIILISGLMCMMGIDTPSKF 309
Query: 398 ESSQE 412 E+ QE Sbjct: 310 EAPQE 314
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