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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950818
Clone id TST38A01NGRL0009_L11
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TGAACTGGTTGACACAGTTGAAGATGTGGAGGATTTTATATCCAGACGAAAAACAAGTCG
AAAATCCAGTGAAACAGATGTCATCCTCACATGCCCAGTATCAAAACATGGACTGGAAGA
GGGAGAGTCTGAAGTGGAACTGTTAGTCTCTGTTCTCTCTGCGCTCCGCCAGTCAGGCAC
ACGCAATGCAGTCTTTTATGCATCTGATCCTATGAGCGGTCACGAATACAATGGGCGCAT
GCTTGCCTCAAATACAACAAGCACGAACACGACTTGTGATGATATTTGTGAAACCATAGC
AGGTGTTTACGAGGGTATAATTGTGGCTGTTACACTTTTGATTATCTTGATTTCTGGCTT
ATGCTGCATGATGGGCATCCACACACCATCGAGGTTTGAGAGCTCCCAAGAATAAGCTGT
TCTTGAAGAAATTTGAGGTGGAATTTATGAGTGAAGGCATTGTGACCAGCTAATAAGTGC
TTTCAAGAACACTGTAAATTATGGGCATGGGGGGAGGTGTAATAGCTGCCTACTTTCTTT
TGTAAGCTCAATTTGTGGTTGGCTATTATTCATTAATGTAGTTGGTGCTTCAAGGCCAGG
CATGGGCCTTGACAAGTAGTCCCATGCTTCCGAGGTTATCATTCTTAAACAAGAAGTTTG
CTT
■■Homology search results ■■ -
sp_hit_id Q1QZX1
Definition sp|Q1QZX1|SYA_CHRSD Alanyl-tRNA synthetase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768)
Align length 53
Score (bit) 33.5
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950818|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L11, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1QZX1|SYA_CHRSD Alanyl-tRNA synthetase OS=Chromohalobacter s...    33   1.0  
sp|Q8DI93|SFSA_THEEB Sugar fermentation stimulation protein homo...    32   3.0  
sp|Q6FKI5|SMA2_CANGA Spore membrane assembly protein 2 OS=Candid...    31   5.1  
sp|Q7NJU8|SFSA_GLOVI Sugar fermentation stimulation protein homo...    31   6.7  
sp|Q1H3U9|SYA_METFK Alanyl-tRNA synthetase OS=Methylobacillus fl...    30   8.7  
sp|Q8IY92|BTBDC_HUMAN BTB/POZ domain-containing protein 12 OS=Ho...    30   8.8  

>sp|Q1QZX1|SYA_CHRSD Alanyl-tRNA synthetase OS=Chromohalobacter
           salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB
           13768) GN=alaS PE=3 SV=1
          Length = 868

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 15/53 (28%), Positives = 30/53 (56%)
 Frame = +3

Query: 156 SLRSASQAHAMQSFMHLIL*AVTNTMGACLPQIQQARTRLVMIFVKP*QVFTR 314
           ++R   +  A + F H ++ A+   MGA  P++++AR R+  + +K  + F R
Sbjct: 305 AIRHGHKLGAREPFFHTLVAALDAEMGAAYPELRKARPRIEKVLLKEEEQFAR 357


>sp|Q8DI93|SFSA_THEEB Sugar fermentation stimulation protein homolog
           OS=Thermosynechococcus elongatus (strain BP-1) GN=sfsA
           PE=3 SV=1
          Length = 241

 Score = 32.0 bits (71), Expect = 3.0
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = -1

Query: 555 QIELTKESRQLLHLPPCP*FTVFLKALISWSQCLHS*IPPQISSRTAYSWELSNLDGVWM 376
           +IELT   R   H P     T   +         H+        + AY+WE+  +DG W+
Sbjct: 27  EIELTSGDRVTAHCPNTGPMTGICQVGAPVQVSYHA----DPKRKLAYTWEMIFVDGTWV 82

Query: 375 PIMQHKPEIKIIKSVTATIIP 313
            +    P   I  ++ A I+P
Sbjct: 83  GVNTSLPNRVIASALAAGILP 103


>sp|Q6FKI5|SMA2_CANGA Spore membrane assembly protein 2 OS=Candida
           glabrata GN=SMA2 PE=3 SV=1
          Length = 366

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = -3

Query: 451 LINSTSNFFKNSLFLGALK---PRWCVDAHHAA*ARNQDNQKCNSHNYTLVNTCYGFTNI 281
           +++STS++    ++LG LK   P   +D      A +  N   +S+N+ L+ T  G   +
Sbjct: 268 MVSSTSSYLATIVYLGTLKLLEPTEMLDTQSQV-AGHVLNNDTHSNNWDLLQTTVGSGFV 326

Query: 280 ITS-RVRACCI*GKHAPIVFVTAHRIRCIKD 191
           I+  R    C+     P+VF+ A+R    KD
Sbjct: 327 ISCFRYIVQCL---MLPLVFIAANRYTKAKD 354


>sp|Q7NJU8|SFSA_GLOVI Sugar fermentation stimulation protein homolog
           OS=Gloeobacter violaceus GN=sfsA PE=3 SV=1
          Length = 236

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -1

Query: 438 PQISSRTAYSWELSNLDGVWMPIMQHKPEIKIIKSVTATII 316
           P  + + AY+WE+ +LDG W+ +    P   + +++   +I
Sbjct: 60  PDPARKLAYTWEMIDLDGTWVGVNTALPNRIVYRALVERVI 100


>sp|Q1H3U9|SYA_METFK Alanyl-tRNA synthetase OS=Methylobacillus
           flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=alaS
           PE=3 SV=1
          Length = 874

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 156 SLRSASQAHAMQSFMHLIL*AVTNTMGACLPQIQQARTRLVMI 284
           ++R   +  A Q+F HL++ A+ N MG   P+++    R+  I
Sbjct: 313 AIRHGYKLGARQAFFHLMVSALVNEMGDAYPELKSGEERITSI 355


>sp|Q8IY92|BTBDC_HUMAN BTB/POZ domain-containing protein 12 OS=Homo
           sapiens GN=BTBD12 PE=1 SV=3
          Length = 1834

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 29/128 (22%), Positives = 49/128 (38%), Gaps = 19/128 (14%)
 Frame = -1

Query: 639 ITSEAWDYLSRPMPGLEAPTTLMNNSQP---QIE-----LTKESRQLLHLPPCP*FTVFL 484
           I  EA +   +  P +  P  L+ +S+    QIE     L  E  +L   PP P   +  
Sbjct: 451 IRPEAENKSRKKKPPVSPPLLLVQDSETTGRQIEDRVALLLSEEVELSSTPPLPASRILK 510

Query: 483 KALISWSQCLHS*IPPQISSRTAYSWELSNLDGVWM-----------PIMQHKPEIKIIK 337
           +      QC     PP    + ++ WE S L G W            P++  +P   +++
Sbjct: 511 EGWERAGQC-----PPPPERKQSFLWEGSALTGAWAMEDFYTARLVPPLVPQRPAQGLMQ 565

Query: 336 SVTATIIP 313
                ++P
Sbjct: 566 EPVPPLVP 573
tr_hit_id A7P0C9
Definition tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera
Align length 142
Score (bit) 67.4
E-value 8.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950818|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L11, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome ...    67   8e-10
tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis...    67   8e-10
tr|A9RPZ5|A9RPZ5_PHYPA Predicted protein OS=Physcomitrella paten...    60   2e-07
tr|B7FKU1|B7FKU1_MEDTR Putative uncharacterized protein OS=Medic...    58   5e-07
tr|Q93WB8|Q93WB8_ARATH Putative uncharacterized protein At3g1341...    57   8e-07
tr|Q8LFS9|Q8LFS9_ARATH Putative uncharacterized protein (Fragmen...    57   8e-07
tr|Q8H7I0|Q8H7I0_ARATH Putative uncharacterized protein OS=Arabi...    57   8e-07
tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea...    55   3e-06
tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea m...    50   1e-04
tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea m...    50   1e-04
tr|Q2RB32|Q2RB32_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    46   0.002
tr|A2ZAZ8|A2ZAZ8_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.002
tr|Q2QYD3|Q2QYD3_ORYSJ Os12g0123900 protein OS=Oryza sativa subs...    45   0.003
tr|B8BLS9|B8BLS9_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|A9SHC6|A9SHC6_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.034
tr|A3CEI1|A3CEI1_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.1  

>tr|A7P0C9|A7P0C9_VITVI Chromosome chr6 scaffold_3, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00024859001
           PE=4 SV=1
          Length = 315

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
 Frame = +2

Query: 17  VEDVEDFIXXXXXXXXXXETDVILTCPVSKHXXXXXXXXXXXXXXXXXA-LRQSGTRNAV 193
           +  V D++           TD+++ C    H                 + L QSGT+  V
Sbjct: 173 LHSVHDYLVSRRKMRPVGPTDLVMFCHGGSHLEELDQRLESEVFSELISSLEQSGTKYTV 232

Query: 194 FYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXX 346
            Y SDP    +Y       R LA             CD++C+  + + EG++V +     
Sbjct: 233 LYVSDPFRSIQYPSYRDLERFLAEGTYGNGSANSTTCDEVCQIKSSLLEGLLVGIVLLII 292

Query: 347 XXSGLCCMMGIHTPSRFESSQE 412
             SGLCCMMGI TP+RFE+ Q+
Sbjct: 293 LISGLCCMMGIDTPTRFEAPQD 314


>tr|A5BJ31|A5BJ31_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041203 PE=4 SV=1
          Length = 315

 Score = 67.4 bits (163), Expect = 8e-10
 Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 10/142 (7%)
 Frame = +2

Query: 17  VEDVEDFIXXXXXXXXXXETDVILTCPVSKHXXXXXXXXXXXXXXXXXA-LRQSGTRNAV 193
           +  V D++           TD+++ C    H                 + L QSGT+  V
Sbjct: 173 LHSVHDYLVSRRKMRPVGPTDLVMFCHGGSHLEELDQRLESEVFSELISSLEQSGTKYTV 232

Query: 194 FYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXX 346
            Y SDP    +Y       R LA             CD++C+  + + EG++V +     
Sbjct: 233 LYVSDPFRSIQYPSYRDLERFLAEGTYGNGSANSTTCDEVCQIKSSLLEGLLVGIVLLII 292

Query: 347 XXSGLCCMMGIHTPSRFESSQE 412
             SGLCCMMGI TP+RFE+ Q+
Sbjct: 293 LISGLCCMMGIDTPTRFEAPQD 314


>tr|A9RPZ5|A9RPZ5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160326 PE=4 SV=1
          Length = 324

 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
 Frame = +2

Query: 17  VEDVEDFIXXXXXXXXXXETDVILTC---PVSKHXXXXXXXXXXXXXXXXXALRQSGTRN 187
           V D++ +I          ETDV++ C    +                     ++ SGT N
Sbjct: 185 VADIQGYIFGRKTSRAQGETDVMVICYSPTLHWSTDGVSNSEGIVLEEVLSTVKSSGTSN 244

Query: 188 AVFYASDP-MSGHEYNG---RMLAXXXXXXXXXCDDICETIAGVYEGIIVAVTXXXXXXS 355
              Y S+P +S  +++G   R L          CD +C + A + EGI VA T      S
Sbjct: 245 VAIYFSEPSVSSVKHHGILERHLLEGSGTGSTDCDALCRSRAVILEGIFVAFTLITILVS 304

Query: 356 GLCCMMGIHTPSRFESSQE 412
           G+CCM  + +P+RFE+++E
Sbjct: 305 GICCMKAVKSPARFETAKE 323


>tr|B7FKU1|B7FKU1_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 318

 Score = 58.2 bits (139), Expect = 5e-07
 Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
 Frame = +2

Query: 17  VEDVEDFIXXXXXXXXXXETDVILTC--PVSKHXXXXXXXXXXXXXXXXXALRQSGTRNA 190
           ++ V+ ++          +TD+++ C  P +                   ++ +SG + A
Sbjct: 176 LQSVQAYLTKRKEESHKGKTDLVVFCNGPQASKNVDSTKSEGEVLSELISSVEESGAKYA 235

Query: 191 VFYASDPMSGHEYNG-----RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXX 343
           V Y SD     +Y       R LA             CD +C+  + + EG++V +    
Sbjct: 236 VLYVSDISRSIQYPSYRDLQRFLAESTTGNGSTNSTACDGVCQLKSSLLEGLLVGIVLLI 295

Query: 344 XXXSGLCCMMGIHTPSRFESSQE 412
              SGLCCMMGI +P+RFE+ QE
Sbjct: 296 ILISGLCCMMGIDSPTRFEAPQE 318


>tr|Q93WB8|Q93WB8_ARATH Putative uncharacterized protein At3g13410
           OS=Arabidopsis thaliana GN=At3g13410 PE=2 SV=1
          Length = 321

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = +2

Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319
           ++ QSG++    Y SDP     Y    R LA              CD++C+  + + EGI
Sbjct: 230 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 289

Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412
           +V +       SGLCCM GI TP+RFE+ Q+
Sbjct: 290 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 320


>tr|Q8LFS9|Q8LFS9_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 203

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = +2

Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319
           ++ QSG++    Y SDP     Y    R LA              CD++C+  + + EGI
Sbjct: 112 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 171

Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412
           +V +       SGLCCM GI TP+RFE+ Q+
Sbjct: 172 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 202


>tr|Q8H7I0|Q8H7I0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 321

 Score = 57.4 bits (137), Expect = 8e-07
 Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
 Frame = +2

Query: 161 ALRQSGTRNAVFYASDPMSGHEYNG--RMLAXXXXXXXXX-----CDDICETIAGVYEGI 319
           ++ QSG++    Y SDP     Y    R LA              CD++C+  + + EGI
Sbjct: 230 SVEQSGSKYTALYVSDPYWYTSYKTLQRFLAETAKGNSTPEIATGCDELCKFKSSLLEGI 289

Query: 320 IVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412
           +V +       SGLCCM GI TP+RFE+ Q+
Sbjct: 290 LVGIVFLLILISGLCCMAGIDTPTRFETPQD 320


>tr|A9NVN3|A9NVN3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 320

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
 Frame = +2

Query: 164 LRQSGTRNAVFYASDP--MSGH----EYNGRMLAXXXXXXXXX---CDDICETIAGVYEG 316
           L+Q+G    V Y SDP  M  H    +   R+++            CD +C++ A + EG
Sbjct: 228 LQQAGIIYTVLYTSDPYEMVPHGRFQKLERRLISNDSGNGSASLTYCDGVCKSKASLLEG 287

Query: 317 IIVAVTXXXXXXSGLCCMMGIHTPSRFESSQE 412
            +V +       SGLCCMMGI TP+RFE+  E
Sbjct: 288 FLVGLVLLIILLSGLCCMMGIQTPTRFEAPHE 319


>tr|B6THR0|B6THR0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 318

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 40/124 (32%), Positives = 47/124 (37%), Gaps = 10/124 (8%)
 Frame = +2

Query: 71  ETDVILTCPVSKHXXXXXXXXXXXXXXXXXALRQSGTRNAVFYASDPMSGHEYN-----G 235
           +TDVI+ C                       L  SG +  V YAS P    E       G
Sbjct: 194 QTDVIVFCSGGFENPGTAKSEGELLSQLVDLLDLSGAKYTVLYASQPSGLLESPSGLPLG 253

Query: 236 RMLAXXXXXXXXX-----CDDICETIAGVYEGIIVAVTXXXXXXSGLCCMMGIHTPSRFE 400
           R LA              CD  C   + + EG  V +       SGL CMMGI TPSRFE
Sbjct: 254 RHLAEKKTNGTKAVQGEKCDGECLVKSSLLEGTFVGIVLLIILISGLMCMMGIDTPSRFE 313

Query: 401 SSQE 412
           + QE
Sbjct: 314 APQE 317


>tr|B4G107|B4G107_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 315

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 39/125 (31%), Positives = 50/125 (40%), Gaps = 11/125 (8%)
 Frame = +2

Query: 71  ETDVILTCPVSKHXXXXXXXXXXXXXXXXXALRQSGTRNAVFYASDPMSGHEYNG----- 235
           +TDVI+ C                       L+ SG R+ + YAS P SG+         
Sbjct: 191 QTDVIVFCSGGFEKLGTTESEGELLSQLVDLLKLSGARHTILYASQP-SGYLLENPSGSP 249

Query: 236 --RMLAXXXXXXXXX----CDDICETIAGVYEGIIVAVTXXXXXXSGLCCMMGIHTPSRF 397
             R LA             CD  C   + + EG  V +       SGL CMMGI TPS+F
Sbjct: 250 VARHLAERTNGTKTGLLSKCDGECLVKSTLLEGTFVGIVLLIILISGLMCMMGIDTPSKF 309

Query: 398 ESSQE 412
           E+ QE
Sbjct: 310 EAPQE 314