DK950821
Clone id TST38A01NGRL0009_L14
Library
Length 714
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CAGAGCCAACGGGTGTTTTGAATGGAAGATCTTCACAATCGGTAAAAGGATACACGGAAG
TCAACTCAGGATCCTTTGCTAGAATCAATGGAGCCAGCAGAATAGCAGAAGCCGCTAAAT
TACCGGAAGCTTTGCCTTCCACTTCAAGGTTATCATTGAAACAGGCACATCTTCGAAAAT
CCCACTCAAATTTTACTGTTCCGCAGCCCTTTGCACTTGCAACTGATAAAAGAGCTTCCT
TAGGAGGGCAACCACACTCTTCAAGTAGAGTTTACGTGTCTTCCAGGTCTTTCAGCTCTC
AGATAATTCGAGAAGGTGAAAAGAAAGCTAATGACGGCAAAGGAGATGACCTAAAATTTC
AAGAGTCTGTTAAGCATGAAGAGACCAAAGCACAGTTGAAGGCAAGTGCCAATACGTTCA
ACTTCAATAGTGACGTCCGTGCTGAACGAAGGAAAGAGTTCAATTCGAAAATGGAGGAGC
GTCTAACAGCAAAGGAGGCAGAGAAGACTCAAGCGCAAGCCAAAACAAAGAAGGTTATAC
AAGCTGAAATAAAGCAGTTTCGGAAGAGTCTTACTTTCAAAGCTACTCCTATGCCGTCAT
TCTATCAAGATGCGACTCCACCAAAACTAGAGATCAAGAAAATACCTCCNACAAGGGCCA
AGTCACCAAAGCTAGGTAGAAGGAACAGTGCTACAGGGGCTCATGCTGGTCATT
■■Homology search results ■■ -
sp_hit_id P20237
Definition sp|P20237|GBRA4_BOVIN Gamma-aminobutyric acid receptor subunit alpha-4 OS=Bos taurus
Align length 43
Score (bit) 33.1
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950821|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L14, 5'
(714 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P20237|GBRA4_BOVIN Gamma-aminobutyric acid receptor subunit a... 33 1.5
sp|P36188|TNNI_DROME Troponin I OS=Drosophila melanogaster GN=wu... 32 2.6
sp|Q28969|NOS3_PIG Nitric oxide synthase, endothelial OS=Sus scr... 31 5.8

>sp|P20237|GBRA4_BOVIN Gamma-aminobutyric acid receptor subunit
alpha-4 OS=Bos taurus GN=GABRA4 PE=2 SV=2
Length = 555

Score = 33.1 bits (74), Expect = 1.5
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +3

Query: 15 VLNGRSSQSVKGYTEVNSGSFARINGASRIAEAAKLPEALPST 143
V+ G S + + Y + F+R N A I+ A +P ALPST
Sbjct: 416 VVQGSSEATPQSYLASSPNPFSRANAAETISAARAIPSALPST 458


>sp|P36188|TNNI_DROME Troponin I OS=Drosophila melanogaster GN=wupA
PE=1 SV=3
Length = 269

Score = 32.3 bits (72), Expect = 2.6
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +3

Query: 306 IREGEKKANDGKGDDLK--FQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEE 479
I + + ND +G +K ++ K+E A+L+ A FNF + ++ ++KEF + EE
Sbjct: 185 INDLNAQVNDLRGKFVKPALKKVSKYENKFAKLQKKAAEFNFRNQLKVVKKKEFTLEEEE 244

Query: 480 R 482
+
Sbjct: 245 K 245


>sp|Q28969|NOS3_PIG Nitric oxide synthase, endothelial OS=Sus scrofa
GN=NOS3 PE=1 SV=4
Length = 1205

Score = 31.2 bits (69), Expect = 5.8
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3

Query: 315 GEKKANDGKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSK 470
GE+ G+GD+L QE +A +AS TF D +A R F+ K
Sbjct: 678 GERLLQLGQGDELCGQEEAFRGWAQAAFQASCETFCVGEDAKAAARDIFSPK 729


tr_hit_id A9TU86
Definition tr|A9TU86|A9TU86_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 260
Score (bit) 128.0
E-value 4.0e-28
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950821|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L14, 5'
(714 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TU86|A9TU86_PHYPA Predicted protein OS=Physcomitrella paten... 128 4e-28
tr|Q7XYW3|Q7XYW3_BRANA Seed specific protein Bn15D14A (Fragment)... 113 1e-23
tr|A9P9R6|A9P9R6_POPTR Putative uncharacterized protein OS=Popul... 113 1e-23
tr|Q94C48|Q94C48_ARATH Putative uncharacterized protein At4g3233... 108 3e-22
tr|A7P5T9|A7P5T9_VITVI Chromosome chr4 scaffold_6, whole genome ... 108 3e-22
tr|Q761Z6|Q761Z6_ORYSJ BRI1-KD interacting protein 118 (Fragment... 108 4e-22
tr|Q6Z797|Q6Z797_ORYSJ Putative BRI1-KD interacting protein OS=O... 108 4e-22
tr|Q0E303|Q0E303_ORYSJ Os02g0200800 protein (Fragment) OS=Oryza ... 108 4e-22
tr|A3A489|A3A489_ORYSJ Putative uncharacterized protein OS=Oryza... 108 4e-22
tr|A2X244|A2X244_ORYSI Putative uncharacterized protein OS=Oryza... 107 6e-22
tr|Q3E9S8|Q3E9S8_ARATH Uncharacterized protein At4g32330.2 OS=Ar... 105 2e-21
tr|B7ZXM3|B7ZXM3_MAIZE Putative uncharacterized protein OS=Zea m... 102 2e-20
tr|B6U8B2|B6U8B2_MAIZE WDL1 OS=Zea mays PE=2 SV=1 102 2e-20
tr|B4FBB6|B4FBB6_MAIZE Putative uncharacterized protein OS=Zea m... 102 2e-20
tr|A9PG41|A9PG41_POPTR Putative uncharacterized protein OS=Popul... 102 3e-20
tr|B6TK06|B6TK06_MAIZE Lymphoid organ expressed yellow head viru... 101 4e-20
tr|Q9LS82|Q9LS82_ARATH Gb|AAF04893.1 OS=Arabidopsis thaliana PE=... 101 5e-20
tr|Q84WL6|Q84WL6_ARATH At3g23090 (Putative uncharacterized prote... 101 5e-20
tr|B4FRD7|B4FRD7_MAIZE Putative uncharacterized protein OS=Zea m... 100 1e-19
tr|A9SSX1|A9SSX1_PHYPA Predicted protein (Fragment) OS=Physcomit... 100 1e-19
tr|Q9SKK1|Q9SKK1_ARATH Putative uncharacterized protein At2g2548... 99 2e-19
tr|A9SIL1|A9SIL1_PHYPA Predicted protein (Fragment) OS=Physcomit... 99 2e-19
tr|Q2R2B9|Q2R2B9_ORYSJ Os11g0571900 protein OS=Oryza sativa subs... 98 5e-19
tr|Q0WSZ8|Q0WSZ8_ARATH Putative uncharacterized protein At2g2548... 98 5e-19
tr|B8BL54|B8BL54_ORYSI Putative uncharacterized protein OS=Oryza... 98 5e-19
tr|B6T3N0|B6T3N0_MAIZE Seed specific protein Bn15D14A OS=Zea may... 98 5e-19
tr|Q9SJ62|Q9SJ62_ARATH Expressed protein (Putative uncharacteriz... 97 1e-18
tr|A7QMQ2|A7QMQ2_VITVI Chromosome undetermined scaffold_127, who... 97 1e-18
tr|A9TNQ1|A9TNQ1_PHYPA Predicted protein (Fragment) OS=Physcomit... 96 2e-18
tr|Q69Q42|Q69Q42_ORYSJ Os06g0606800 protein OS=Oryza sativa subs... 96 3e-18

>tr|A9TU86|A9TU86_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_97346 PE=4 SV=1
Length = 775

Score = 128 bits (321), Expect = 4e-28
Identities = 88/260 (33%), Positives = 132/260 (50%), Gaps = 27/260 (10%)
Frame = +3

Query: 12 GVLNGRSSQSVKGYTEVNSGSFARINGASRIAEAAKLPEALPSTSRLSLKQAHLRKSHSN 191
G++ G+ + SV + S + A + KL + S+ ++ +R S +
Sbjct: 325 GIVTGKKAPSVAELGKPAKPSTTSVQPALDGSLKTKLAAMEEGETSDSVPKSSVRGSRAK 384

Query: 192 FTVPQPFALATDKRASLGGQPHXXXXXXXXXXXXXX-----------------------Q 302
T+PQPF LAT+KRASLG +P +
Sbjct: 385 LTIPQPFRLATEKRASLGVRPADAETTRPRATSNVVKKSHPVPTTKTAGATGRIMAFPTE 444

Query: 303 IIREGEKKANDGKGD-DLKFQESVKHEETKAQLKA-SANTFNFNSDVRAERRKEFNSKME 476
I +E ++ + + D + KF+E E T ++K+ + + F+F SD RAE+R+EF SK+E
Sbjct: 445 ISKEDQEALDTSEKDKEAKFEE----ELTVLRIKSGNPSGFSFKSDERAEKRREFYSKLE 500

Query: 477 ERLXXXXXXXXXXXXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTR 656
E++ ++ ++KQ RKSLTFKATP+PSFYQ++ PPK+E+KKIPPTR
Sbjct: 501 EKMKAKEEEMSQSQAKSQEELENKMKQLRKSLTFKATPLPSFYQESGPPKVEVKKIPPTR 560

Query: 657 AKSPKL--GRRNSATGAHAG 710
KSPKL RR S G H G
Sbjct: 561 PKSPKLTTARRGSPRGEHDG 580


>tr|Q7XYW3|Q7XYW3_BRANA Seed specific protein Bn15D14A (Fragment)
OS=Brassica napus PE=2 SV=1
Length = 267

Score = 113 bits (283), Expect = 1e-23
Identities = 78/208 (37%), Positives = 103/208 (49%), Gaps = 11/208 (5%)
Frame = +3

Query: 108 EAAKLPEALPSTSRLSLKQAHLRK-----SHSNFTVPQPFALATDKRASLGG-QPHXXXX 269
E A L + S ++ L H+ K + TVPQPFALAT KRAS + H
Sbjct: 3 EIATLRKDAKSVNKSVLHAKHVSKPGRGSNKIRNTVPQPFALATAKRASSATRESHEVAD 62

Query: 270 XXXXXXXXXXQIIREGEKKANDGKGDDLKFQESVKHEETKAQLKASANTF-----NFNSD 434
++ R+ + N D+ + SV T A A + T +F S
Sbjct: 63 MYSKIQKQVIKVPRKPLQPKNKKLSDEEEDSCSVASYATSAAKSAKSRTIVTAAPSFRST 122

Query: 435 VRAERRKEFNSKMEERLXXXXXXXXXXXXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDA 614
RAE+RKEF +K+EE+ A ++Q RKSL FKA PMP+FY +
Sbjct: 123 ERAEKRKEFYTKLEEKHQAMEAEKTQSEARNKEEKDAALRQLRKSLMFKANPMPNFYHEG 182

Query: 615 TPPKLEIKKIPPTRAKSPKLGRRNSATG 698
PPK+E+KK PPTRAKSPKLGRRN+ G
Sbjct: 183 PPPKVELKKPPPTRAKSPKLGRRNTKEG 210


>tr|A9P9R6|A9P9R6_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 404

Score = 113 bits (283), Expect = 1e-23
Identities = 76/206 (36%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Frame = +3

Query: 138 STSRLSLKQAHLRKSHSNFTVPQPFALATDKRASLGGQP-------HXXXXXXXXXXXXX 296
S+++ + K A + + TVPQPFALAT+KRASLG +P +
Sbjct: 121 SSTKHASKPAPAGLARTKHTVPQPFALATEKRASLGMRPSGEPDITNGLNKSFKANNALR 180

Query: 297 XQIIREGE------------KKANDGKGDDLKFQESVKHEETKAQLKASANTFN-FNSDV 437
I++ + K + + D+ S A+ K +A F +
Sbjct: 181 PNPIKQNQPLSVSRKPLQPNNKKHPDEEDNCSVTSSTTASARPAESKPAAVAAPVFRCNE 240

Query: 438 RAERRKEFNSKMEERLXXXXXXXXXXXXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDAT 617
RAE+RKEF SK+EE+ +A IKQ RKSL FKA+PMPSFY +
Sbjct: 241 RAEKRKEFYSKLEEKHLALEAEKTQSEARTKEEKEAAIKQLRKSLMFKASPMPSFYHEGP 300

Query: 618 PPKLEIKKIPPTRAKSPKLGRRNSAT 695
PPK+E+KK+PPTRAKSPKLGRR S +
Sbjct: 301 PPKVELKKLPPTRAKSPKLGRRKSCS 326


>tr|Q94C48|Q94C48_ARATH Putative uncharacterized protein At4g32330
OS=Arabidopsis thaliana GN=At4g32330 PE=2 SV=1
Length = 437

Score = 108 bits (271), Expect = 3e-22
Identities = 58/130 (44%), Positives = 79/130 (60%), Gaps = 2/130 (1%)
Frame = +3

Query: 318 EKKANDGKGDDLKFQESVKHEETKAQLKASANT--FNFNSDVRAERRKEFNSKMEERLXX 491
+K+A++ DD + S K ++ K + + F+F D RAE+RKEF K+EE+
Sbjct: 172 KKQAHETSEDDTQSSNSPKADDGKPRKVGALPNYGFSFKCDQRAEKRKEFYVKLEEKTHA 231

Query: 492 XXXXXXXXXXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPK 671
+AE++ RKSL FKATPMPSFYQ+ PPK E+KKIPPTR KSPK
Sbjct: 232 KEEEINSMQAKSKETQEAELRMLRKSLNFKATPMPSFYQEPQPPKTELKKIPPTRPKSPK 291

Query: 672 LGRRNSATGA 701
LGR+ +A+GA
Sbjct: 292 LGRKKTASGA 301


>tr|A7P5T9|A7P5T9_VITVI Chromosome chr4 scaffold_6, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00032657001
PE=4 SV=1
Length = 431

Score = 108 bits (270), Expect = 3e-22
Identities = 56/107 (52%), Positives = 73/107 (68%), Gaps = 2/107 (1%)
Frame = +3

Query: 378 EETKAQLKASANTFNFN--SDVRAERRKEFNSKMEERLXXXXXXXXXXXXXXXXVIQAEI 551
E+TK + A+ ++NF+ D RAE+R+EF +K+EE+ +AEI
Sbjct: 219 EDTKPRRVAALPSYNFSFRCDERAEKRREFYTKLEEKTHAKEIERTNLQAKSKETQEAEI 278

Query: 552 KQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGRRNSA 692
K RKSLTFKATPMPSFYQ+ PPK+E+KKIPPTRAKSPKLGR+ S+
Sbjct: 279 KMLRKSLTFKATPMPSFYQEPPPPKVELKKIPPTRAKSPKLGRKKSS 325


>tr|Q761Z6|Q761Z6_ORYSJ BRI1-KD interacting protein 118 (Fragment)
OS=Oryza sativa subsp. japonica GN=bip118 PE=2 SV=1
Length = 334

Score = 108 bits (269), Expect = 4e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3

Query: 336 GKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEERLXXXXXXXXXX 515
G+ +K + E KA A F+F D RAE+RKEF SK+EE++
Sbjct: 102 GQNSSVKKDDESNPESRKAG-GTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNL 160

Query: 516 XXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGR-RNSA 692
+AE+K RKSL FKATPMPSFYQ+ TPPK+E+KKIPPTRA+SPKLGR +N +
Sbjct: 161 QAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 220

Query: 693 TG 698
G
Sbjct: 221 AG 222


>tr|Q6Z797|Q6Z797_ORYSJ Putative BRI1-KD interacting protein
OS=Oryza sativa subsp. japonica GN=P0419A09.11 PE=4 SV=1
Length = 395

Score = 108 bits (269), Expect = 4e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3

Query: 336 GKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEERLXXXXXXXXXX 515
G+ +K + E KA A F+F D RAE+RKEF SK+EE++
Sbjct: 163 GQNSSVKKDDESNPESRKAG-GTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNL 221

Query: 516 XXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGR-RNSA 692
+AE+K RKSL FKATPMPSFYQ+ TPPK+E+KKIPPTRA+SPKLGR +N +
Sbjct: 222 QAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 281

Query: 693 TG 698
G
Sbjct: 282 AG 283


>tr|Q0E303|Q0E303_ORYSJ Os02g0200800 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os02g0200800 PE=4 SV=1
Length = 334

Score = 108 bits (269), Expect = 4e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3

Query: 336 GKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEERLXXXXXXXXXX 515
G+ +K + E KA A F+F D RAE+RKEF SK+EE++
Sbjct: 102 GQNSSVKKDDESNPESRKAG-GTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNL 160

Query: 516 XXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGR-RNSA 692
+AE+K RKSL FKATPMPSFYQ+ TPPK+E+KKIPPTRA+SPKLGR +N +
Sbjct: 161 QAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 220

Query: 693 TG 698
G
Sbjct: 221 AG 222


>tr|A3A489|A3A489_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_005611 PE=4 SV=1
Length = 410

Score = 108 bits (269), Expect = 4e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3

Query: 336 GKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEERLXXXXXXXXXX 515
G+ +K + E KA A F+F D RAE+RKEF SK+EE++
Sbjct: 163 GQNSSVKKDDESNPESRKAG-GTPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNL 221

Query: 516 XXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGR-RNSA 692
+AE+K RKSL FKATPMPSFYQ+ TPPK+E+KKIPPTRA+SPKLGR +N +
Sbjct: 222 QAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 281

Query: 693 TG 698
G
Sbjct: 282 AG 283


>tr|A2X244|A2X244_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06272 PE=4 SV=1
Length = 395

Score = 107 bits (268), Expect = 6e-22
Identities = 59/122 (48%), Positives = 75/122 (61%), Gaps = 1/122 (0%)
Frame = +3

Query: 336 GKGDDLKFQESVKHEETKAQLKASANTFNFNSDVRAERRKEFNSKMEERLXXXXXXXXXX 515
G+ +K + E KA A F+F D RAE+RKEF SK+EE++
Sbjct: 163 GQNSSVKKDDESNPESRKAG-GIPAYGFSFKCDERAEKRKEFYSKLEEKIHAREMEISNL 221

Query: 516 XXXXXXVIQAEIKQFRKSLTFKATPMPSFYQDATPPKLEIKKIPPTRAKSPKLGR-RNSA 692
+AE+K RKSL FKATPMPSFYQ+ TPPK+E+KKIPPTRA+SPKLGR +N +
Sbjct: 222 QAKSKETEEAELKMLRKSLNFKATPMPSFYQEPTPPKVELKKIPPTRARSPKLGRSKNKS 281

Query: 693 TG 698
G
Sbjct: 282 AG 283