DK950823
Clone id TST38A01NGRL0009_L16
Library
Length 685
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CGCTGTCCTCCTCGTCACACACGATACCACATACAAAAAAAGACAGCTGTTTCGTGCGGC
AATGCGTACACCAAAGCCTTTCTCCATTGGTGCGGCCAGACCGTCTCGTGCTTTTCAATA
AGAAATCTTCTTTCCGTTAAAGGGAAACCCTACCTCTCAAATGCATTCAAAGCAATGGAA
TTCCCCCAGCGTCAGCTAGTAGGAGCAGGTGTACCGTGTAACACATGTTTCATAGGTCTA
CACAAACAAGGCTGCTTTCATGAAGATCATGTAGACGTGCTGTGCACAGCCTACTTCAGT
GCAAGCATGTAGGGTTCTTTGCTGCGTGTCCGCTTTTTTGCAGCGTACTAAAAACTGCAG
CCTCAATGGCGGTCTGCACGCTTAATTTGCCCAAGAGAGCTAACAGAGCGCCTTTCAGCC
CTTGCTTTAGAAGAGAGGAGCTTTGCTACTGCACGGAAGAATTAGGCTCAGAGAGCATAA
GCTGCCGGAGCGGCACAACAGAAGGTACAAAAGCTGCCACGCAGAATCATGGCCACCATG
GAAGCTACCGAGCAGCATATTGTGGGCACCATGACAGCGATGTGGTAAGAGCCGCTGCTA
AAGGCACATGGCAGAAGGCATATATGTCTGGTACGTCCTCGCCTTCCATGAATGAGATGT
TGCTTCGTGCAGCAGGGCCAGGCGC
■■Homology search results ■■ -
sp_hit_id Q6ZW35
Definition sp|Q6ZW35|U627C_HUMAN UPF0627 protein ENSP00000358171 OS=Homo sapiens
Align length 73
Score (bit) 32.3
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950823|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L16, 5'
(685 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6ZW35|U627C_HUMAN UPF0627 protein ENSP00000358171 OS=Homo sa... 32 2.4
sp|Q94AH8|TPS6_ARATH Alpha,alpha-trehalose-phosphate synthase [U... 32 3.2
sp|Q03132|ERYA2_SACER Erythronolide synthase, modules 3 and 4 OS... 31 7.1

>sp|Q6ZW35|U627C_HUMAN UPF0627 protein ENSP00000358171 OS=Homo
sapiens PE=2 SV=1
Length = 169

Score = 32.3 bits (72), Expect = 2.4
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Frame = +3

Query: 324 ACPLFCSVL-----KTAASMAVCTLNLPKRANRAPFS-PCFRREELCYCTEELGSESISC 485
ACP+ C +L A ++CT P + RA ++ P REE + TE +G E
Sbjct: 24 ACPVACILLVWNSQTPAGLQSLCTGRHPSLSARAQWAGPRASREEGTFWTEPVGQERRLI 83

Query: 486 RSGTTEGTKAATQ 524
RSG+++ Q
Sbjct: 84 RSGSSQNESQEDQ 96


>sp|Q94AH8|TPS6_ARATH Alpha,alpha-trehalose-phosphate synthase
[UDP-forming] 6 OS=Arabidopsis thaliana GN=TPS6 PE=1
SV=2
Length = 860

Score = 32.0 bits (71), Expect = 3.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -2

Query: 387 N*ACRPPLRLQFLVRCKKADTQQRTLHACTEVG-CAQHVYMIFMKAALFV*TYETCVTRY 211
N CR L F+V K +T C ++G A+H Y + ++ A+ +E CV
Sbjct: 632 NTLCRDKGNLVFIVSAKSRETLSDWFSPCEKLGIAAEHGYFLRLRKAV---EWENCVAAV 688

Query: 210 TCSY 199
CS+
Sbjct: 689 DCSW 692


>sp|Q03132|ERYA2_SACER Erythronolide synthase, modules 3 and 4
OS=Saccharopolyspora erythraea GN=eryA PE=1 SV=3
Length = 3567

Score = 30.8 bits (68), Expect = 7.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2

Query: 482 LPERHNRRYKSCHAESWPPWKLP 550
L E H R +SC + +W PW LP
Sbjct: 1277 LAEHHRARGRSCTSVAWTPWALP 1299


tr_hit_id Q5LRW9
Definition tr|Q5LRW9|Q5LRW9_SILPO Acetylpolyamine aminohydrolase OS=Silicibacter pomeroyi
Align length 120
Score (bit) 37.0
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950823|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_L16, 5'
(685 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5LRW9|Q5LRW9_SILPO Acetylpolyamine aminohydrolase OS=Silicib... 37 1.2
tr|Q608U8|Q608U8_METCA Formate dehydrogenase, alpha subunit OS=M... 35 3.4
tr|Q1GEW8|Q1GEW8_SILST Histone deacetylase superfamily OS=Silici... 35 3.4

>tr|Q5LRW9|Q5LRW9_SILPO Acetylpolyamine aminohydrolase
OS=Silicibacter pomeroyi GN=SPO2002 PE=4 SV=1
Length = 341

Score = 37.0 bits (84), Expect = 1.2
Identities = 29/120 (24%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Frame = +3

Query: 330 PLFCSVLKTAASMAVCTLNLPKRANRAPFSPCFRREELCYCTEELGSESISCRSGTTEGT 509
P VL+ A A C P A P + E L + ++I R G
Sbjct: 30 PRRIEVLRAGAEAAGCVFAAPGDAGLGPIAALHSPEYLTFL------QTIHARWRRIPGA 83

Query: 510 KAATQNHGHHGSYRAAY-------CGHHDSDVVRAAAKGTWQKAYMSGTSSPSMNEMLLR 668
A + H G+ Y G+H +D A+GTW+ AY S S+ + +++++
Sbjct: 84 GAEVIPNIHPGARTDGYPKSAVGQAGYHQADTACPIAEGTWEAAYWSAQSAITGADLIIQ 143


>tr|Q608U8|Q608U8_METCA Formate dehydrogenase, alpha subunit
OS=Methylococcus capsulatus GN=MCA1391 PE=4 SV=1
Length = 947

Score = 35.4 bits (80), Expect = 3.4
Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Frame = +3

Query: 312 GFFAACPLFCSVLKTAASMAVCTLNLPKRANRAPFSPCFRREELCYCTEELG-SESISCR 488
GF A P SV++ AAS+ + L + PF C LC E G SC
Sbjct: 26 GFTATVPEGTSVMRAAASIGIDIPRLCATDSLEPFGSC----RLCVVQIEGGRGLPASCT 81

Query: 489 SGTTEGTKAATQNHGHHGSYRA---AYCGHHDSDVVRAAAKGTWQKAYMSG 632
+ EG K TQN R Y H D + +A G + M+G
Sbjct: 82 TPVFEGMKVVTQNDRLAQIRRGIMELYISDHPLDCLTCSANGNCELQDMAG 132


>tr|Q1GEW8|Q1GEW8_SILST Histone deacetylase superfamily
OS=Silicibacter sp. (strain TM1040) GN=TM1040_2066 PE=4
SV=1
Length = 342

Score = 35.4 bits (80), Expect = 3.4
Identities = 26/115 (22%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
Frame = +3

Query: 345 VLKTAASMAVCTLNLPKRANRAPFSPCFRREELCYCTEELGSESISCRSGTTEGTKAATQ 524
+L++ A A CT P+ A P + E L + ++I R EG
Sbjct: 35 ILRSGAEAAGCTFTAPEDAGLGPIAALHSPEYLTFL------QTIHARWSEIEGAGPEVI 88

Query: 525 NHGHHGSYRAAY-------CGHHDSDVVRAAAKGTWQKAYMSGTSSPSMNEMLLR 668
+H G R +Y G+H +D TW AY S ++ + +++ +
Sbjct: 89 SHIKPGDRRDSYPRSALGQAGYHQADTSCPINADTWGSAYWSAQTAITAADLIAK 143