DK950824 |
Clone id |
TST38A01NGRL0009_L17 |
Library |
TST38 |
Length |
652 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_L17. 5' end sequence. |
Accession |
DK950824 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL376Contig1 |
Sequence |
CGATCTGGTGTCGCGGAATCGATACGGCGAGCATGGCTACTGCAGGGGCAGCGAATTCTG TAGTGCCGAGGAATAGGACAAACCCCCGCAATGGGGGGCTTGACGATGATAGTATGGCGT TTGAGACGAGTCCCGGGGTGGAAGTATACAGCACGTTCGACAGCATGGGCATTCGAGATG AGCTTCTTCGTGGAATCTATGCCTATGGTTTTGAAAAACCTTCAGCTATTCAGCAGCGTG CCATACGGCCCATCATCCAGAATCGTGATGTCATAGCGCAGGCCCAGTCTGGTACTGGGA AGACTTCCATGATTGCCCTTGCTGTGTGCCAAATTATCGACACAACTGTTAGAGAGGTGC AGGCTTTAATCCTATCTCCGACTAGAGAGCTGGCAGCTCAGACTGAAAAGGTTATTTTAG CCATTGGTGATTATATAAATGTGCGGGCCCATTCTTGCATTGGTGGTAAAAACATTGGGG AGGATATAAGAAAGCTTGAGAACGGTGTCCATGTGGTCTCTGGAACGCCAGGAAGGGTTT ATGACATGATAAAAAGGAGGACTTTAGGAACAAGGGCCATGAAGCTTCTTGTCCTTGATG AATCAGATGAAATGCTGAGCAGAGGTTTTAAAGACCAGATTTATGATGTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q10I26 |
Definition |
sp|Q10I26|RH34_ORYSJ DEAD-box ATP-dependent RNA helicase 34 OS=Oryza sativa subsp. japonica |
Align length |
186 |
Score (bit) |
291.0 |
E-value |
3.0e-78 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QFA1 |
Definition |
tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
203 |
Score (bit) |
298.0 |
E-value |
3.0e-79 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950824|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_L17, 5' (652 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whol... 298 3e-79 tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea... 296 6e-79 tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequen... 291 3e-77 tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza... 291 3e-77 tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza... 291 3e-77 tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza... 289 1e-76 tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Pu... 286 6e-76 tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 285 2e-75 tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella paten... 284 3e-75 tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sati... 282 1e-74 tr|A8DX61|A8DX61_MEDSA DH OS=Medicago sativa PE=2 SV=1 282 1e-74 tr|A9U4K0|A9U4K0_PHYPA Predicted protein OS=Physcomitrella paten... 280 4e-74 tr|A5C5V5|A5C5V5_VITVI Putative uncharacterized protein OS=Vitis... 273 5e-72 tr|A8JBN7|A8JBN7_CHLRE Eukaryotic initiation factor OS=Chlamydom... 260 6e-68 tr|A2WT17|A2WT17_ORYSI Putative uncharacterized protein OS=Oryza... 257 4e-67 tr|A8D930|A8D930_9GENT ATP-dependent DEAD-box helicase OS=Apocyn... 254 3e-66 tr|A4S618|A4S618_OSTLU Predicted protein OS=Ostreococcus lucimar... 254 4e-66 tr|Q00XK3|Q00XK3_OSTTA Putative nicotiana eukaryotic (ISS) OS=Os... 251 2e-65 tr|B7QER9|B7QER9_IXOSC DEAD box ATP-dependent RNA helicase, puta... 246 7e-64 tr|B6PI66|B6PI66_BRAFL Putative uncharacterized protein (Fragmen... 246 7e-64 tr|B6MJV0|B6MJV0_BRAFL Putative uncharacterized protein OS=Branc... 246 7e-64 tr|B3SAG4|B3SAG4_TRIAD DEAD box ATP-dependent RNA helicase OS=Tr... 246 7e-64 tr|Q0PZE7|Q0PZE7_BOMMO EIF4AIII protein OS=Bombyx mori PE=2 SV=1 246 1e-63 tr|Q16GE2|Q16GE2_AEDAE DEAD box ATP-dependent RNA helicase OS=Ae... 244 3e-63 tr|A8WW00|A8WW00_CAEBR Putative uncharacterized protein OS=Caeno... 244 4e-63 tr|Q7PQQ2|Q7PQQ2_ANOGA AGAP003089-PA OS=Anopheles gambiae GN=AGA... 243 6e-63 tr|A8P212|A8P212_BRUMA ATP-dependent helicase DDX48, putative (F... 243 7e-63 tr|Q3B8Q2|Q3B8Q2_RAT Similar to DEAD (Asp-Glu-Ala-Asp) box polyp... 243 1e-62 tr|A6M931|A6M931_PIG Eukaryotic translation initiation factor 4A... 243 1e-62 tr|Q6IBQ2|Q6IBQ2_HUMAN DDX48 protein OS=Homo sapiens GN=DDX48 PE... 243 1e-62
>tr|A7QFA1|A7QFA1_VITVI Chromosome undetermined scaffold_87, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037338001 PE=4 SV=1 Length = 415
Score = 298 bits (762), Expect = 3e-79 Identities = 151/203 (74%), Positives = 170/203 (83%) Frame = +3
Query: 42 AGAANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKP 221 A A SVVP NR RNG +DD+ + FET+ GVE +FD MGI+D+LLRGIYAYGFEKP Sbjct: 3 AAATASVVPANRGGRRNGAVDDEKLVFETTEGVEPIMSFDQMGIKDDLLRGIYAYGFEKP 62
Query: 222 SXXXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQ 401 S RDVIAQAQSGTGKTSMIAL VCQ++DT+ REVQALILSPTRELA+Q Sbjct: 63 SAIQQRAVLPIIQGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSPTRELASQ 122
Query: 402 TEKVILAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAM 581 TEKVILAIGD+IN++AH+CIGGK++GEDIRKLE GVH+VSGTPGRV DMIKRRTL TRA+ Sbjct: 123 TEKVILAIGDFINIQAHACIGGKSVGEDIRKLEYGVHIVSGTPGRVCDMIKRRTLRTRAI 182
Query: 582 KLLVLDESDEMLSRGFKDQIYDV 650 KLLVLDESDEMLSRGFKDQIYDV Sbjct: 183 KLLVLDESDEMLSRGFKDQIYDV 205
>tr|A9NUU4|A9NUU4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 408
Score = 296 bits (759), Expect = 6e-79 Identities = 155/194 (79%), Positives = 168/194 (86%) Frame = +3
Query: 69 RNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXX 248 RNR N RN D+++ FETSPGVEV S+FD MGIRD+LLRGIY YGFEKPS Sbjct: 9 RNRNNGRNPD-GDENLIFETSPGVEVISSFDQMGIRDDLLRGIYQYGFEKPSAIQQRAVM 67
Query: 249 XXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIG 428 RDVIAQAQSGTGKTSMIALAVCQIIDT++REVQALI+SPTRELAAQTEKVILAIG Sbjct: 68 PIINGRDVIAQAQSGTGKTSMIALAVCQIIDTSIREVQALIVSPTRELAAQTEKVILAIG 127
Query: 429 DYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESD 608 D+INV+AH+CIGGK+IGEDIRKLE GVHVVSGTPGRV DMIKRRTL TRA+KLLVLDESD Sbjct: 128 DFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAVKLLVLDESD 187
Query: 609 EMLSRGFKDQIYDV 650 EMLSRGFKDQIYDV Sbjct: 188 EMLSRGFKDQIYDV 201
>tr|B7EMG9|B7EMG9_ORYSJ cDNA clone:J033052B21, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 404
Score = 291 bits (744), Expect = 3e-77 Identities = 144/186 (77%), Positives = 164/186 (88%) Frame = +3
Query: 93 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 272 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 273 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 452 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 453 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFK 632 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML RGFK Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191
Query: 633 DQIYDV 650 DQIYDV Sbjct: 192 DQIYDV 197
>tr|A3AJN1|A3AJN1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_011003 PE=3 SV=1 Length = 394
Score = 291 bits (744), Expect = 3e-77 Identities = 144/186 (77%), Positives = 164/186 (88%) Frame = +3
Query: 93 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 272 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 273 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 452 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 453 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFK 632 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML RGFK Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191
Query: 633 DQIYDV 650 DQIYDV Sbjct: 192 DQIYDV 197
>tr|A2ZVV2|A2ZVV2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_002674 PE=3 SV=1 Length = 394
Score = 291 bits (744), Expect = 3e-77 Identities = 144/186 (77%), Positives = 164/186 (88%) Frame = +3
Query: 93 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 272 G +DD+++ FETSPGVEV S+FD MGIRD+LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 273 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 452 IAQAQSGTGKTSMI+L+VCQI+DT VREVQALILSPTRELAAQTE+V+LAIGD+IN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVMLAIGDFINIQVH 131
Query: 453 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFK 632 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML RGFK Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191
Query: 633 DQIYDV 650 DQIYDV Sbjct: 192 DQIYDV 197
>tr|B8AKV8|B8AKV8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_12293 PE=4 SV=1 Length = 404
Score = 289 bits (739), Expect = 1e-76 Identities = 143/186 (76%), Positives = 164/186 (88%) Frame = +3
Query: 93 GGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDV 272 G +DD+++ FETSPGVEV S+FD MGIR++LLRGIYAYGFEKPS RDV Sbjct: 12 GAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVLPIISGRDV 71
Query: 273 IAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAH 452 IAQAQSGTGKTSMI+L+VCQI++T VREVQALILSPTRELAAQTE+V+LAIGDYIN++ H Sbjct: 72 IAQAQSGTGKTSMISLSVCQIVNTAVREVQALILSPTRELAAQTERVMLAIGDYINIQVH 131
Query: 453 SCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFK 632 +CIGGK+IGEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KLL+LDE+DEML RGFK Sbjct: 132 ACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDEADEMLGRGFK 191
Query: 633 DQIYDV 650 DQIYDV Sbjct: 192 DQIYDV 197
>tr|Q2MJJ9|Q2MJJ9_MAIZE Putative RH2 protein (RNA helicase 2) (Putative uncharacterized protein) OS=Zea mays GN=RH2 PE=2 SV=1 Length = 407
Score = 286 bits (733), Expect = 6e-76 Identities = 147/201 (73%), Positives = 168/201 (83%) Frame = +3
Query: 48 AANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSX 227 AA + R RN +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS Sbjct: 2 AAPTTSRRGPGGARN--MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSA 59
Query: 228 XXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTE 407 RDVIAQAQSGTGKTSMI+L VCQI+DT VREVQALILSPTRELA+QTE Sbjct: 60 IQQRAVLPIINGRDVIAQAQSGTGKTSMISLTVCQIVDTAVREVQALILSPTRELASQTE 119
Query: 408 KVILAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKL 587 +V+LAIGD++NV+ H+CIGGK+IGEDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KL Sbjct: 120 RVMLAIGDHLNVQVHACIGGKSIGEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKL 179
Query: 588 LVLDESDEMLSRGFKDQIYDV 650 LVLDE+DEMLSRGFKDQIYDV Sbjct: 180 LVLDEADEMLSRGFKDQIYDV 200
>tr|B5AKW1|B5AKW1_PENAM eIF-4A OS=Pennisetum americanum PE=2 SV=1 Length = 407
Score = 285 bits (728), Expect = 2e-75 Identities = 140/184 (76%), Positives = 161/184 (87%) Frame = +3
Query: 99 LDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIA 278 +DD+++ FETSPGVEV S+FD MGI+D+LLRGIY YGFEKPS RDVIA Sbjct: 17 MDDENLTFETSPGVEVVSSFDQMGIKDDLLRGIYGYGFEKPSAIQQRAVLPIINGRDVIA 76
Query: 279 QAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAHSC 458 QAQSGTGK+SMI+L VCQI+DT VREVQALILSPTRELA+QTEKV+LA+GDY+N++ H+C Sbjct: 77 QAQSGTGKSSMISLTVCQIVDTAVREVQALILSPTRELASQTEKVMLAVGDYLNIQVHAC 136
Query: 459 IGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFKDQ 638 IGGK+I EDIR+LENGVHVVSGTPGRV DMIKRRTL TRA+KLLVLDE+DEMLSRGFKDQ Sbjct: 137 IGGKSISEDIRRLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLVLDEADEMLSRGFKDQ 196
Query: 639 IYDV 650 IYDV Sbjct: 197 IYDV 200
>tr|A9TNS6|A9TNS6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_60709 PE=4 SV=1 Length = 397
Score = 284 bits (727), Expect = 3e-75 Identities = 144/183 (78%), Positives = 160/183 (87%) Frame = +3
Query: 102 DDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSXXXXXXXXXXXXNRDVIAQ 281 + +++ FETS GVEV S+FD MGIR++LLRGIYAYGFEKPS RD IAQ Sbjct: 8 EGENLVFETSAGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQRAVMPIISGRDAIAQ 67
Query: 282 AQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTEKVILAIGDYINVRAHSCI 461 AQSGTGKTSMIALAVCQ+IDT REVQALILSPTRELAAQTEKVILAIGD++NV+AH+CI Sbjct: 68 AQSGTGKTSMIALAVCQMIDTATREVQALILSPTRELAAQTEKVILAIGDFMNVQAHACI 127
Query: 462 GGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKLLVLDESDEMLSRGFKDQI 641 GGK+IGEDIRKLE GVHVVSGTPGRVYDMIKRRTL TR++KLL+LDESDEMLSRGFKDQI Sbjct: 128 GGKSIGEDIRKLEYGVHVVSGTPGRVYDMIKRRTLRTRSIKLLILDESDEMLSRGFKDQI 187
Query: 642 YDV 650 YDV Sbjct: 188 YDV 190
>tr|O65879|O65879_PEA Translation initiation factor OS=Pisum sativum GN=eIF-4A PE=2 SV=1 Length = 407
Score = 282 bits (722), Expect = 1e-74 Identities = 145/201 (72%), Positives = 167/201 (83%) Frame = +3
Query: 48 AANSVVPRNRTNPRNGGLDDDSMAFETSPGVEVYSTFDSMGIRDELLRGIYAYGFEKPSX 227 A SVVP NR + ++ M FET+ GV+ +TF+ MGI+++LLRGIYAYGFEKPS Sbjct: 2 ATTSVVPANRGRTV---ISNEDMDFETTEGVKAIATFEGMGIKEDLLRGIYAYGFEKPSA 58
Query: 228 XXXXXXXXXXXNRDVIAQAQSGTGKTSMIALAVCQIIDTTVREVQALILSPTRELAAQTE 407 RDVIAQAQSGTGKTSMIAL VCQ++DT+VREVQALI+SPTRELA QTE Sbjct: 59 IQQRAVAPIIQGRDVIAQAQSGTGKTSMIALTVCQVVDTSVREVQALIVSPTRELATQTE 118
Query: 408 KVILAIGDYINVRAHSCIGGKNIGEDIRKLENGVHVVSGTPGRVYDMIKRRTLGTRAMKL 587 KVILAIGD+IN++AH+CIGGK++GEDIRKLE+GVHVVSGTPGRV DMIKRRTL TRA+KL Sbjct: 119 KVILAIGDHINIQAHACIGGKSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKL 178
Query: 588 LVLDESDEMLSRGFKDQIYDV 650 LVLDESDEMLSRGFKDQIYDV Sbjct: 179 LVLDESDEMLSRGFKDQIYDV 199
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