DK950835
Clone id TST38A01NGRL0009_M04
Library
Length 693
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_M04. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
GGAGACACAAAAGCTCGAGTCATGACTTGAGTGACCATAGTCATGATGAGGAGAGTGAAA
GGAGGAGCAGGAGGAGACATAAAAGGAGAGCTTCAGATTCTGATGCCAGTGATTCTTGCG
ATGAAGAGAGGAAACATCGGAGAAGGCACAAGCAGAGAGATTCTGATTCTGATGCTAGCA
GTGAGAATGGAGGAAAGAGGAAACATCATGGGCACAAGCATAGAAAGCATGCCAAGAAGC
CTCGCGGAGGAGATTACAAAGGTGGTACCAGCTCACAGGAAGAGGAGGGCAAGGGTGGAG
CAGATAAAGAACCCTTTGATGTTTCCAAGGATCGCTGGGAGGCTGATGGGTATGCAGGTG
GTGCTAACAATTTTCAGACTGAAAGACGAGTAGACCTTCGAAAGTTACAACATAGTGATG
ATTTTTACAAATCTGAACACAAGGGTAGGAATGGATTAAATCAGCACTCTGCGGATCATG
ATGCAAATGGGAAGTAGTCTGTGGAGTCTTTCATTTAAGCTTCAAGTGGATTGGTTTCTC
ACCAGGTTGCTTGTAGTGTAGCCAAGGAATGCCCAGAATTGCCTGATGATGATGCCTCAA
ACCGCTGTTTGTGCATTACTCCTGACGTGGGATTGCCAGCTAGGTTCCTCATTGCGAATT
GTCAAGCTTCACCATTTGAATATTGTACTGTTC
■■Homology search results ■■ -
sp_hit_id P60705
Definition sp|P60705|ABEC3_RAT Probable DNA dC->dU-editing enzyme APOBEC3 OS=Rattus norvegicus
Align length 63
Score (bit) 34.7
E-value 0.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950835|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_M04, 5'
(693 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P60705|ABEC3_RAT Probable DNA dC->dU-editing enzyme APOBEC3 O... 35 0.50
sp|Q99J72|ABEC3_MOUSE DNA dC->dU-editing enzyme APOBEC-3 OS=Mus ... 34 0.66
sp|P26982|DEGP_SALTY Protease do OS=Salmonella typhimurium GN=de... 34 0.86
sp|P0C0V0|DEGP_ECOLI Protease do OS=Escherichia coli (strain K12... 34 0.86
sp|P0C0V1|DEGP_ECO57 Protease do OS=Escherichia coli O157:H7 GN=... 34 0.86
sp|P60704|ABEC3_CRILO Probable DNA dC->dU-editing enzyme APOBEC3... 33 1.5
sp|Q89AP5|DEGP_BUCBP Probable serine protease do-like OS=Buchner... 33 1.9
sp|Q7VST8|CHED_BORPE Probable chemoreceptor glutamine deamidase ... 33 1.9
sp|Q7W3Q2|CHED_BORPA Probable chemoreceptor glutamine deamidase ... 33 1.9
sp|Q7WF29|CHED_BORBR Probable chemoreceptor glutamine deamidase ... 33 1.9
sp|Q8HYN8|ACTHR_PIG Adrenocorticotropic hormone receptor OS=Sus ... 32 2.5
sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic OS=... 32 3.3
sp|Q5BCN2|SPT5_EMENI Transcription elongation factor spt5 OS=Eme... 32 4.2
sp|Q7CQ01|CLPB_SALTY Chaperone protein clpB OS=Salmonella typhim... 32 4.2
sp|Q7AMH5|CLPB_SALTI Chaperone protein clpB OS=Salmonella typhi ... 32 4.2
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (Fragment) OS=Alliu... 31 5.5
sp|P22807|SLOU_DROME Homeobox protein slou OS=Drosophila melanog... 31 5.5
sp|P57322|DEGP_BUCAI Probable serine protease do-like OS=Buchner... 31 5.5
sp|Q54IN6|Y8028_DICDI Uncharacterized protein DDB_G0288629 OS=Di... 31 7.2
sp|P82411|PSRP6_SPIOL 50S ribosomal protein 6, chloroplastic OS=... 31 7.2
sp|Q39PN9|PURA2_BURS3 Adenylosuccinate synthetase 2 OS=Burkholde... 30 9.5
sp|P04929|HRPX_PLALO Histidine-rich glycoprotein OS=Plasmodium l... 30 9.5

>sp|P60705|ABEC3_RAT Probable DNA dC->dU-editing enzyme APOBEC3
OS=Rattus norvegicus GN=Apobec3 PE=1 SV=1
Length = 429

Score = 34.7 bits (78), Expect = 0.50
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P ++WY SW + CA V FL +H NLS
Sbjct: 79 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQVLRFLATH-----HNLSLD 125

Query: 147 AFS 139
FS
Sbjct: 126 IFS 128


>sp|Q99J72|ABEC3_MOUSE DNA dC->dU-editing enzyme APOBEC-3 OS=Mus
musculus GN=Apobec3 PE=2 SV=2
Length = 429

Score = 34.3 bits (77), Expect = 0.66
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P ++WY SW + CA + FL +H NLS
Sbjct: 79 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQIVRFLATH-----HNLSLD 125

Query: 147 AFS 139
FS
Sbjct: 126 IFS 128


>sp|P26982|DEGP_SALTY Protease do OS=Salmonella typhimurium GN=degP
PE=2 SV=1
Length = 475

Score = 33.9 bits (76), Expect = 0.86
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + ++ L +M E G + + M
Sbjct: 238 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGT 297

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L E+ K + +R A V Q+
Sbjct: 298 ELNSELAKAMKVDAQRGAFVSQV 320


>sp|P0C0V0|DEGP_ECOLI Protease do OS=Escherichia coli (strain K12)
GN=degP PE=1 SV=1
Length = 474

Score = 33.9 bits (76), Expect = 0.86
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + ++ L +M E G + + M
Sbjct: 237 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGT 296

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L E+ K + +R A V Q+
Sbjct: 297 ELNSELAKAMKVDAQRGAFVSQV 319


>sp|P0C0V1|DEGP_ECO57 Protease do OS=Escherichia coli O157:H7
GN=degP PE=3 SV=1
Length = 474

Score = 33.9 bits (76), Expect = 0.86
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + ++ L +M E G + + M
Sbjct: 237 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGT 296

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L E+ K + +R A V Q+
Sbjct: 297 ELNSELAKAMKVDAQRGAFVSQV 319


>sp|P60704|ABEC3_CRILO Probable DNA dC->dU-editing enzyme APOBEC3
OS=Cricetulus longicaudatus GN=APOBEC3 PE=1 SV=1
Length = 396

Score = 33.1 bits (74), Expect = 1.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSH 181
W H +VL +L P ++WY SW + CA + FL +H
Sbjct: 79 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQIVRFLATH 119


>sp|Q89AP5|DEGP_BUCBP Probable serine protease do-like OS=Buchnera
aphidicola subsp. Baizongia pistaciae GN=degP PE=3 SV=1
Length = 465

Score = 32.7 bits (73), Expect = 1.9
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTSREI-LILMLAVRMEERGNIMGTSIESMPR 237
GGA ++KGEL + IL GNIG G + I ++ L ++ E G + + +
Sbjct: 225 GGALVNLKGELIGINTAILTPDGGNIGIGFAIPINMVNNLTTQILEYGQVKQNELGIVGM 284

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L ++ KV+ + R A + Q+
Sbjct: 285 ELNSDLAKVLKINVHRGAFISQV 307


>sp|Q7VST8|CHED_BORPE Probable chemoreceptor glutamine deamidase
cheD OS=Bordetella pertussis GN=cheD PE=3 SV=1
Length = 215

Score = 32.7 bits (73), Expect = 1.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1

Query: 109 VILAMKRGNIGEGTSREILILM----LAVRMEERGNIMGTSIESMPRSLAEEITKVVPAH 276
V+ AM+ NIGE + +L + + VR ++ G++ I PR + K+ P H
Sbjct: 114 VLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGRVMVRKMAPHH 173

Query: 277 RKRRARVEQ 303
+K A + Q
Sbjct: 174 QKAEALIAQ 182


>sp|Q7W3Q2|CHED_BORPA Probable chemoreceptor glutamine deamidase
cheD OS=Bordetella parapertussis GN=cheD PE=3 SV=1
Length = 212

Score = 32.7 bits (73), Expect = 1.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1

Query: 109 VILAMKRGNIGEGTSREILILM----LAVRMEERGNIMGTSIESMPRSLAEEITKVVPAH 276
V+ AM+ NIGE + +L + + VR ++ G++ I PR + K+ P H
Sbjct: 114 VLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGRVMVRKMAPHH 173

Query: 277 RKRRARVEQ 303
+K A + Q
Sbjct: 174 QKAEALIAQ 182


>sp|Q7WF29|CHED_BORBR Probable chemoreceptor glutamine deamidase
cheD OS=Bordetella bronchiseptica GN=cheD PE=3 SV=1
Length = 226

Score = 32.7 bits (73), Expect = 1.9
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +1

Query: 109 VILAMKRGNIGEGTSREILILM----LAVRMEERGNIMGTSIESMPRSLAEEITKVVPAH 276
V+ AM+ NIGE + +L + + VR ++ G++ I PR + K+ P H
Sbjct: 114 VLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPRDGRVMVRKMAPHH 173

Query: 277 RKRRARVEQ 303
+K A + Q
Sbjct: 174 QKAEALIAQ 182


tr_hit_id A0DMT7
Definition tr|A0DMT7|A0DMT7_PARTE Chromosome undetermined scaffold_57, whole genome shotgun sequence OS=Paramecium tetraurelia
Align length 63
Score (bit) 42.0
E-value 0.037
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950835|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_M04, 5'
(693 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A0DMT7|A0DMT7_PARTE Chromosome undetermined scaffold_57, whol... 42 0.037
tr|Q3T1K0|Q3T1K0_RAT Apolipoprotein B editing complex 3 OS=Rattu... 37 1.2
tr|Q9LBK0|Q9LBK0_SHISO Heat shock protein HtrA OS=Shigella sonne... 36 2.7
tr|Q16KR1|Q16KR1_AEDAE Putative uncharacterized protein OS=Aedes... 35 4.5
tr|Q8Z9B0|Q8Z9B0_SALTI Protease DO; heat shock protein HtrA OS=S... 35 4.6
tr|B2AU32|B2AU32_PODAN Predicted CDS Pa_1_17810 OS=Podospora ans... 35 5.9
tr|B5T0J0|B5T0J0_MOUSE Apobec3 splice variant OS=Mus musculus GN... 35 6.0
tr|B5T0I8|B5T0I8_MOUSE Apobec3 splice variant OS=Mus musculus GN... 35 6.0
tr|A8G9V5|A8G9V5_SERP5 Protease Do OS=Serratia proteamaculans (s... 35 6.0
tr|Q3U5C5|Q3U5C5_MOUSE Putative uncharacterized protein OS=Mus m... 34 7.8
tr|B5T0I9|B5T0I9_MOUSE Apobec3 OS=Mus musculus GN=Apobec3 PE=2 SV=1 34 7.8
tr|B5T0I7|B5T0I7_MOUSE Apobec3 OS=Mus musculus GN=Apobec3 PE=2 SV=1 34 7.8
tr|A7MGS3|A7MGS3_ENTS8 Putative uncharacterized protein OS=Enter... 34 7.8
tr|B0DHZ1|B0DHZ1_LACBS Predicted protein OS=Laccaria bicolor (st... 34 7.8

>tr|A0DMT7|A0DMT7_PARTE Chromosome undetermined scaffold_57, whole
genome shotgun sequence OS=Paramecium tetraurelia
GN=GSPATT00018558001 PE=4 SV=1
Length = 3085

Score = 42.0 bits (97), Expect = 0.037
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Frame = -1

Query: 477 DPQSADLIHSYP-----CVQICKNHHYVVTFEGLLVFQSENC*HHLHTHQPPSDPWKHQR 313
DP D I +Y C++ C+N +Y F GL SE C LH+HQ D WK Q
Sbjct: 884 DPNCIDCIKNYLWSSEFCIR-CQNGYYSSAFTGLCYVCSEECQECLHSHQVYQDSWKWQI 942

Query: 312 VLY 304
+ Y
Sbjct: 943 IPY 945


>tr|Q3T1K0|Q3T1K0_RAT Apolipoprotein B editing complex 3 OS=Rattus
norvegicus GN=Apobec3 PE=2 SV=1
Length = 385

Score = 37.0 bits (84), Expect = 1.2
Identities = 24/76 (31%), Positives = 33/76 (43%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P V+WY SW CA V+ FL +H +NLS
Sbjct: 82 WFHDKVLRVLSPMEEFKVTWY--------MSWSPCSKCAEQVARFLAAH-----RNLSLA 128

Query: 147 AFSDVSSLHRKNHWHQ 100
FS + +N +Q
Sbjct: 129 IFSSRLYYYLRNPNYQ 144


>tr|Q9LBK0|Q9LBK0_SHISO Heat shock protein HtrA OS=Shigella sonnei
GN=htrA PE=4 SV=1
Length = 491

Score = 35.8 bits (81), Expect = 2.7
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + +++ L +M E G + + M
Sbjct: 237 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVINLTSQMVEYGQVKRGELGIMGT 296

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L E+ K + +R A V Q+
Sbjct: 297 ELISELAKAMKVDAQRGAFVSQV 319


>tr|Q16KR1|Q16KR1_AEDAE Putative uncharacterized protein OS=Aedes
aegypti GN=AAEL012909 PE=4 SV=1
Length = 3461

Score = 35.0 bits (79), Expect = 4.5
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +3

Query: 546 VACSVAKECPELPDDDASNRCLCITPDVGLPARFLIANCQASPFEYC 686
V CS +CP D+ RCLC P++G R N P +C
Sbjct: 597 VTCSKDHDCPGNAICDSHKRCLCPEPNIGNDCRHPCENAACGPNSHC 643


>tr|Q8Z9B0|Q8Z9B0_SALTI Protease DO; heat shock protein HtrA
OS=Salmonella typhi GN=htrA PE=4 SV=1
Length = 475

Score = 35.0 bits (79), Expect = 4.6
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + ++ L +M E G + + M
Sbjct: 238 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRGELGIMGT 297

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L+ E+ K + +R A V Q+
Sbjct: 298 ELSSELAKAMKVDAQRGAFVSQV 320


>tr|B2AU32|B2AU32_PODAN Predicted CDS Pa_1_17810 OS=Podospora
anserina PE=4 SV=1
Length = 585

Score = 34.7 bits (78), Expect = 5.9
Identities = 27/100 (27%), Positives = 41/100 (41%), Gaps = 21/100 (21%)
Frame = +3

Query: 252 DYKGGTSSQEEEGKGGADKEPFDVS---KDRWEADGYAGGANNFQTERRVDLR------- 401
DY+ G S+ +EG GG D + + S +DR D Y GG + +R D
Sbjct: 57 DYRSGGRSRRDEGAGGGDVDAYSSSRSHRDREREDRYTGGRDRRGGDRGGDREWDRDRGG 116

Query: 402 KLQHSDDFYKSEHKG-----------RNGLNQHSADHDAN 488
+ + DD + E +G R G + D DA+
Sbjct: 117 RSRRDDDDGRRERRGERPDRDVIDDRRGGGRRGGGDRDAD 156


>tr|B5T0J0|B5T0J0_MOUSE Apobec3 splice variant OS=Mus musculus
GN=Apobec3 PE=2 SV=1
Length = 373

Score = 34.7 bits (78), Expect = 6.0
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P ++WY SW + CA V FL +H NLS
Sbjct: 23 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQVLRFLATH-----HNLSLD 69

Query: 147 AFS 139
FS
Sbjct: 70 IFS 72


>tr|B5T0I8|B5T0I8_MOUSE Apobec3 splice variant OS=Mus musculus
GN=Apobec3 PE=2 SV=1
Length = 373

Score = 34.7 bits (78), Expect = 6.0
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P ++WY SW + CA V FL +H NLS
Sbjct: 23 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQVLRFLATH-----HNLSLD 69

Query: 147 AFS 139
FS
Sbjct: 70 IFS 72


>tr|A8G9V5|A8G9V5_SERP5 Protease Do OS=Serratia proteamaculans
(strain 568) GN=Spro_0789 PE=3 SV=1
Length = 476

Score = 34.7 bits (78), Expect = 6.0
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1

Query: 61 GGAGGDIKGELQILMPVILAMKRGNIGEGTS-REILILMLAVRMEERGNIMGTSIESMPR 237
GGA ++ GEL + ILA GNIG G + ++ L +M E G + + M
Sbjct: 237 GGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTAQMVEYGQVKRGELGIMGT 296

Query: 238 SLAEEITKVVPAHRKRRARVEQI 306
L E+ K + +R A V Q+
Sbjct: 297 ELNSELAKAMKVDAQRGAFVSQV 319


>tr|Q3U5C5|Q3U5C5_MOUSE Putative uncharacterized protein OS=Mus
musculus GN=Apobec3 PE=2 SV=1
Length = 396

Score = 34.3 bits (77), Expect = 7.8
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1

Query: 327 WKHQRVLYLLHPCPPLPVSWYHLCNLLREASWHAFYACAHDVSSFLHSHC*HQNQNLSAC 148
W H +VL +L P ++WY SW + CA + FL +H NLS
Sbjct: 79 WFHDKVLKVLSPREEFKITWY--------MSWSPCFECAEQIVRFLATH-----HNLSLD 125

Query: 147 AFS 139
FS
Sbjct: 126 IFS 128