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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950842
Clone id TST38A01NGRL0009_M11
Library
Length 617
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_M11. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTCACCTGGGGTCCATGGGTTGGTGCCGGCCATGATGAAGCATATTGGTATGGCCAATGC
TTCAGGGGTGCTTCCCATACCTCCACCGCTCAGGCCGTTCGCACACGGTCCTCACCCAAT
CCCTCAACATTTAGTGACAGCACCTGGAAACGTGCCGGTTGTTGTCCCAGGCGGCCCCGC
CCGGACATTTCCACCGATGGGTGTCTTGAGCCCTGCTGGGTGGCCGGCAGTCCCTCCCCG
AGCTCCTCCACGACCTCCAAACTTGGGCACTGGCGTCTTCTTTCCCTCAAGCGGCTCGGG
TGGAAGTGGTAATGTAGGAAGACCTCTTCAAATGCAGCCAGGAGTGGTCATGATGTCACC
TCTCTTTTTTTAGCCCCCCCCCCTGGTACCATTCGCACCAATACAAAAAAAAAAAGGTCA
GTCCAATAGGACCCAACGGCCAGCAGGAGCAATTGAACAAGGTGATCACCTGGTAGAAAG
AGGGGACTCTCTAGGTTCATGGCATCCATCCGCAGGGTCTGGTGGTGAGCCTATTCTTCC
AAGGAAAGCCACAAGGAAAGAGTCTGCGCATCCTGGCCTCAAGCCAGGGGTCAATGGTAA
CTCCATTGTCAAAGAGG
■■Homology search results ■■ -
sp_hit_id Q15428
Definition sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens
Align length 41
Score (bit) 32.0
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950842|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_M11, 5'
         (617 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapie...    32   2.6  
sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus...    31   4.5  
sp|Q2NL68|CS055_HUMAN Uncharacterized protein C19orf55 OS=Homo s...    31   4.5  
sp|Q9JMD2|SMBT1_RAT Scm-like with four MBT domains protein 1 OS=...    30   7.6  
sp|Q9JMD1|SMBT1_MOUSE Scm-like with four MBT domains protein 1 O...    30   7.6  
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        30   9.9  
sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens...    30   9.9  
sp|Q10134|FEP1_SCHPO Iron-sensing transcription factor 1 OS=Schi...    30   9.9  
sp|Q5PYH7|DLG2_DANRE Disks large homolog 2 OS=Danio rerio GN=dlg...    30   9.9  

>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 OS=Homo sapiens
           GN=SF3A2 PE=1 SV=2
          Length = 464

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 18/41 (43%), Positives = 20/41 (48%)
 Frame = +2

Query: 2   SPGVHGLVPAMMKHIGMANASGVLPIPPPLRPFAHGPHPIP 124
           +PGVH   P M        A GV P PP + P A G HP P
Sbjct: 390 APGVHPPAPGMHPQ-----APGVHPQPPGVHPSAPGVHPQP 425


>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus
           GN=Prkcsh PE=1 SV=1
          Length = 521

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
 Frame = +1

Query: 4   TWGPWVGAGHDE--AYWYGQ---CFRGASHTSTAQAVRTRSSPNPSTFSDSTWK------ 150
           TWG W G  HD+  A  Y Q   C++G + ++T + +  + +   ST   S  +      
Sbjct: 441 TWGSWAGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETVVTSTTEPSRCEYLMELM 500

Query: 151 RAGCCPRRPRPDISTDG 201
               CP  P P+  +DG
Sbjct: 501 TPAACP-EPPPEAPSDG 516


>sp|Q2NL68|CS055_HUMAN Uncharacterized protein C19orf55 OS=Homo
           sapiens GN=C19orf55 PE=2 SV=1
          Length = 480

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 401 IQKKKGQSNRTQRPAGAIEQGDHLVERGDSLGSWHPSAGSGGEPILPRKATRKE 562
           ++  + + +R +R A A  +   L+++ + LGSW P AGS   P  PR+  R+E
Sbjct: 422 LRAHRAELSRQKREADA--RLSFLLDQAEDLGSWSPPAGS--PPRSPRRLLRRE 471


>sp|Q9JMD2|SMBT1_RAT Scm-like with four MBT domains protein 1
           OS=Rattus norvegicus GN=Sfmbt1 PE=2 SV=2
          Length = 863

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 61  FRGASHTSTAQAVRTRSSPNPSTFSDSTWKRAGCCPRRPRPDISTDGCLEPCWV 222
           ++G S+ +T + VRT  +   + F   T  +  CCP    P +  D C E C V
Sbjct: 575 YKGKSYRATVEIVRT--ADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSV 626


>sp|Q9JMD1|SMBT1_MOUSE Scm-like with four MBT domains protein 1
           OS=Mus musculus GN=Sfmbt1 PE=2 SV=1
          Length = 863

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 61  FRGASHTSTAQAVRTRSSPNPSTFSDSTWKRAGCCPRRPRPDISTDGCLEPCWV 222
           ++G S+ +T + VRT  +   + F   T  +  CCP    P +  D C E C V
Sbjct: 575 YKGKSYRATVEIVRT--ADRVTEFCRQTCIKLECCPNLFGPRMVLDTCSENCSV 626


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = +1

Query: 49   YGQCFRGASHTSTAQAVRTRSSPNPSTFSDSTWKRAGCCPRRPRPDISTDGCLEPC 216
            YGQC     + +   +++  +S        +TW+ +  CP R  P  S + C   C
Sbjct: 1899 YGQCETNGDNLTFCHSLQAYASLCAQAGQVTTWRNSTFCPMRCPPRSSYNPCANSC 1954


>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens
           GN=PRKCSH PE=1 SV=2
          Length = 528

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
 Frame = +1

Query: 4   TWGPWVGAGHDE--AYWYGQ---CFRGASHTSTAQAVRTRSSPNPSTFSDSTWK------ 150
           TWG W+G  HD+  A  Y Q   C++G + ++T + +  + +   ST   S  +      
Sbjct: 448 TWGSWIGPDHDKFSAMKYEQGTGCWQGPNRSTTVRLLCGKETMVTSTTEPSRCEYLMELM 507

Query: 151 RAGCCPRRPRPDISTD 198
               CP  P P+  T+
Sbjct: 508 TPAACP-EPPPEAPTE 522


>sp|Q10134|FEP1_SCHPO Iron-sensing transcription factor 1
           OS=Schizosaccharomyces pombe GN=fep1 PE=1 SV=1
          Length = 564

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 76  HTSTAQAVRTRSSPNPSTFSDSTWKRAGCCPRRPRPDISTDGCLE 210
           + S +Q+ R   SPNPS+   ST  +A   P   +P I +D   E
Sbjct: 99  NASKSQSGRKSLSPNPSSVPSSTETKASPTPLESKPQIVSDTTTE 143


>sp|Q5PYH7|DLG2_DANRE Disks large homolog 2 OS=Danio rerio GN=dlg2
           PE=2 SV=1
          Length = 881

 Score = 30.0 bits (66), Expect = 9.9
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 14  HGLVPAMMKHIGMANASGVLPIPPPLRPFAHGPH-PIPQHLV 136
           H   PAM  HI     +G L     L P + G + P+P+HL+
Sbjct: 352 HSFSPAMENHISSPGNNGTLEYKSSLPPISPGRYSPLPKHLL 393
tr_hit_id Q1B492
Definition tr|Q1B492|Q1B492_MYCSS LigA OS=Mycobacterium sp. (strain MCS)
Align length 70
Score (bit) 35.0
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950842|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_M11, 5'
         (617 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1B492|Q1B492_MYCSS LigA OS=Mycobacterium sp. (strain MCS) GN...    35   3.5  
tr|A4RPH6|A4RPH6_MAGGR Putative uncharacterized protein OS=Magna...    35   3.5  
tr|B5GHL3|B5GHL3_9ACTO Regulatory protein OS=Streptomyces sp. SP...    35   4.6  
tr|Q90ZT8|Q90ZT8_CHICK Ring finger protein (Fragment) OS=Gallus ...    34   6.0  
tr|A8I2X4|A8I2X4_CHLRE Predicted protein OS=Chlamydomonas reinha...    34   6.0  
tr|A3BQI9|A3BQI9_ORYSJ Putative uncharacterized protein OS=Oryza...    34   7.8  

>tr|Q1B492|Q1B492_MYCSS LigA OS=Mycobacterium sp. (strain MCS)
           GN=Mmcs_4187 PE=4 SV=1
          Length = 634

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -1

Query: 383 GGGAKKREVTS*PLLAAFEEVF-LHYHFHPSRLRERRRQCPSXXXXXXXXXXLPATQQGS 207
           GG  + R + S P  A  ++ F LH   HP   R  RRQ P           L A +Q  
Sbjct: 452 GGARRDRHLHSVPRAARADQPFQLHQQHHPGAERGPRRQVPRCRTRRRRAHGLDAGRQ-P 510

Query: 206 RHPSVEMSGR 177
           RHP+V + GR
Sbjct: 511 RHPAVRLCGR 520


>tr|A4RPH6|A4RPH6_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_05520 PE=4 SV=1
          Length = 487

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
 Frame = +1

Query: 46  WYGQCFRGASHTSTAQAVRTRSSPNPSTFSDSTWKRAGCCPRRPR---PDISTDGCLEPC 216
           WY QC  G+S+ +T     T SS + S  S ST +     P  P    P I+T     P 
Sbjct: 58  WYSQCLPGSSNPTTTSRTSTSSSSSTSRTSSSTSRPPSSVPTTPTSVPPTITTTPTTTPT 117

Query: 217 WVAG 228
             +G
Sbjct: 118 GGSG 121


>tr|B5GHL3|B5GHL3_9ACTO Regulatory protein OS=Streptomyces sp. SPB74
           GN=SSBG_03802 PE=4 SV=1
          Length = 149

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 180 PGHFHRWVS*ALLGGRQSLPELLHDLQTWALASSFPQAARVEVVM*E 320
           P  F +  S  LLG R +   ++H+L TW L S  P   RVE+V+ E
Sbjct: 12  PAPFVQRFSSTLLGARLARLLVVHELGTWGLGSGSPLVRRVEIVVGE 58


>tr|Q90ZT8|Q90ZT8_CHICK Ring finger protein (Fragment) OS=Gallus
           gallus GN=arkadia PE=2 SV=1
          Length = 879

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 11  VHGLVPAMMKHIGMANASGVLPIPPPLRPFAHGPHPIPQHLVTA 142
           VH   P+   H     +S  +P PPP  P A+   PIPQHL  A
Sbjct: 581 VHPFHPSSSSHA----SSHPVPPPPPTHPLANAAAPIPQHLPAA 620


>tr|A8I2X4|A8I2X4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_186746 PE=4 SV=1
          Length = 482

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +3

Query: 144 LETCRLLSQAAPPGHFHRWVS*ALLGGRQSLPELLHDLQTWALASSFPQAARVEVVM*ED 323
           + T R    AA P    RW+S   L G+  + E L +L TW  ASS P  + + + + + 
Sbjct: 182 IRTARPQLNAADPS---RWLSGGALNGKLMVDESLQELVTWGAASSLPSTSLLVLPLPDS 238

Query: 324 LF 329
           ++
Sbjct: 239 MY 240


>tr|A3BQI9|A3BQI9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_025311 PE=4 SV=1
          Length = 106

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 407 KKKGQSNRTQRPAGAIEQGDHLVERGDSLGSWHPSAGSGGEPIL---PRKATRKESAHPG 577
           ++KG++    RPAG ++ GD L +  +  GS   +AG+ GE +    PR   R ++A  G
Sbjct: 19  QEKGRAQEKGRPAGFLKGGDDLDDDDNDCGSKEAAAGALGEGVARPSPRARARGDAAGLG 78