DK950860
Clone id TST38A01NGRL0009_N05
Library
Length 642
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GGCAAAATCAGGAAAAGTGAGTTTTTCAAACGATGCTGGATCCCTGGAAGGGGGTAACCT
GGAGGGAGGAAATGCTTATGATCTTCAAAACCAAGTTGAAGGTTTGAGGTCTCCAAGAAG
ACTTGGACCTGTGAAGGTTGAACTTAGTGAAATTGACAGCAGTGTGAACTCGGCGAGGGC
AACTGATGGAGCTTCACATAGTCTACATGGTACAGAAAGTGTTTCTGCTACAGGTGGGAT
AATGGCGTGTGAGAGAGAATTAAATGATGATTTGAAGTCTACTTTTGATATTCCATGCTT
TGACACAGCTCCCAGCATGTGGGAAGATCAGCTTGCCTGGCAGCACCAATTCTCAGAGTT
ACAGGATATGGGCACCCCCCCCGACTCAGAGTCCCTCTCTGTCTTGAAAAAAAAAGAGGG
AATTTGATGGCCACAATCTTCAGGACTATGTATATCCTTCTTTTGACGAACCAGAAATTC
TTGGAGAGATGTGGTCTCTTGTCAACAATGACAATTATTGTGGCCTTGGCAGCAAGGAAA
TGGCGGCTCCGCAGCTCACAAGCAAGTTTGATGGTGACTATATTGAGCTTAACGACATAG
AGGCTCCCCCCAGTGGGTTTGCAGTGAGATCACCACTGGCTG
■■Homology search results ■■ -
sp_hit_id Q8RXE7
Definition sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD14 OS=Arabidopsis thaliana
Align length 100
Score (bit) 32.7
E-value 1.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950860|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N05, 5'
(642 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor GTPase-ac... 33 1.6
sp|Q9D8T4|FA18B_MOUSE Protein FAM18B OS=Mus musculus GN=Fam18b P... 31 4.8
sp|P72030|EMBB_MYCTU Probable arabinosyltransferase B OS=Mycobac... 31 4.8
sp|Q7TVN3|EMBB_MYCBO Probable arabinosyltransferase B OS=Mycobac... 31 4.8
sp|Q2KIS3|UBL7_BOVIN Ubiquitin-like protein 7 OS=Bos taurus GN=U... 30 8.1
sp|Q55F68|CYAD_DICDI Adenylate cyclase, terminal-differentiation... 30 8.1
sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus... 30 8.2

>sp|Q8RXE7|AGD14_ARATH Probable ADP-ribosylation factor
GTPase-activating protein AGD14 OS=Arabidopsis thaliana
GN=AGD14 PE=2 SV=2
Length = 649

Score = 32.7 bits (73), Expect = 1.6
Identities = 30/100 (30%), Positives = 42/100 (42%), Gaps = 12/100 (12%)
Frame = +2

Query: 128 PVKVELSEIDSSVNSARATDGASHSLHGTESVSATGGIMACERELNDDLKSTFDIPC--- 298
P +E + +DSS N + DGAS S + T+ ++ EL++D T IP
Sbjct: 475 PDSIEANPLDSSRNIHQQVDGASTSSYNTDHQHLESQVL---EELSNDGTQTTRIPAGSS 531

Query: 299 -------FDTAPSMWEDQLAWQH--QFSELQDMGTPPDSE 391
APS E+ AWQH + P DSE
Sbjct: 532 AFGFPGNIGMAPSYSEE--AWQHVNEQKSANPFDLPYDSE 569


>sp|Q9D8T4|FA18B_MOUSE Protein FAM18B OS=Mus musculus GN=Fam18b PE=1
SV=1
Length = 205

Score = 31.2 bits (69), Expect = 4.8
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = -2

Query: 590 KLNIVTIKLACELRSRHFLAAKATIIVIVDKRPHLSKNFWFVK 462
+++ V + L CEL S F+A TII++ LS +FW VK
Sbjct: 44 RVSAVVVYLLCELLSSSFIACMVTIILL------LSCDFWAVK 80


>sp|P72030|EMBB_MYCTU Probable arabinosyltransferase B
OS=Mycobacterium tuberculosis GN=embB PE=3 SV=2
Length = 1098

Score = 31.2 bits (69), Expect = 4.8
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +1

Query: 382 RLRVPLCLEKKRGNLMATIFRTMYILLLTNQKFLERCGLLSTM--------TIIVALAAR 537
R R+P LM IF TM+ L+ T K++ GL + + T++V+ +
Sbjct: 560 RKRIPSVARGPAWRLMGVIFGTMFFLMFTPTKWVHHFGLFAAVGAAMAALTTVLVSPSVL 619

Query: 538 KW-RLRSSQASLMVTILSL 591
+W R R + + + +L+L
Sbjct: 620 RWSRNRMAFLAALFFLLAL 638


>sp|Q7TVN3|EMBB_MYCBO Probable arabinosyltransferase B
OS=Mycobacterium bovis GN=embB PE=3 SV=1
Length = 1098

Score = 31.2 bits (69), Expect = 4.8
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 9/79 (11%)
Frame = +1

Query: 382 RLRVPLCLEKKRGNLMATIFRTMYILLLTNQKFLERCGLLSTM--------TIIVALAAR 537
R R+P LM IF TM+ L+ T K++ GL + + T++V+ +
Sbjct: 560 RKRIPSVARGPAWRLMGVIFGTMFFLMFTPTKWVHHFGLFAAVGAAMAALTTVLVSPSVL 619

Query: 538 KW-RLRSSQASLMVTILSL 591
+W R R + + + +L+L
Sbjct: 620 RWSRNRMAFLAALFFLLAL 638


>sp|Q2KIS3|UBL7_BOVIN Ubiquitin-like protein 7 OS=Bos taurus GN=UBL7
PE=2 SV=1
Length = 380

Score = 30.4 bits (67), Expect = 8.1
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 7/106 (6%)
Frame = +2

Query: 125 GPVKVELSEIDSSVNSARATDGASHS-LHGTESVSATGGIMACERELNDDLKSTFDIPCF 301
GP + SE+ +++ A + +SH+ GT+ S+ M+ + + +
Sbjct: 263 GPRPITQSELATALALASTPESSSHTPTPGTQGQSSGTSPMSSSVQSGTPITNDLFSQAL 322

Query: 302 DTA------PSMWEDQLAWQHQFSELQDMGTPPDSESLSVLKKKEG 421
A PS+ Q WQ Q +L+DMG D SL L+ G
Sbjct: 323 QHALQASGQPSL---QSQWQPQLQQLRDMGIQDDELSLRALQATGG 365


>sp|Q55F68|CYAD_DICDI Adenylate cyclase, terminal-differentiation
specific OS=Dictyostelium discoideum GN=acrA PE=1 SV=1
Length = 2123

Score = 30.4 bits (67), Expect = 8.1
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +2

Query: 287 DIPCFDTAPSMWEDQLAWQHQFSELQDMGTPPDSESLSVLKKKEGI 424
+I FD+ P M +D+L +QF D+G D + + + KK G+
Sbjct: 849 EISIFDSGPGMDDDELDICNQFQPFPDIG---DEDDIEIKKKGSGL 891


>sp|Q6W8W4|POL1_RRVC RNA1 polyprotein OS=Raspberry ringspot virus
(strain cherry) PE=3 SV=1
Length = 2367

Score = 30.4 bits (67), Expect = 8.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1

Query: 429 HQIPSFFFKTERDSESGGVPISCNSENWCC 340
++IPSF+ + E + SC++E WCC
Sbjct: 1602 YEIPSFYVEGASTRELNELRTSCSAEVWCC 1631


tr_hit_id Q7YZT6
Definition tr|Q7YZT6|Q7YZT6_CAEEL Trehalose-6-phosphate synthase (Trehalose 6-phosphate synthase protein 1, isoform a) OS=Caenorhabditis elegans
Align length 29
Score (bit) 35.8
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950860|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N05, 5'
(642 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q7YZT6|Q7YZT6_CAEEL Trehalose-6-phosphate synthase (Trehalose... 36 2.3
tr|Q2L6W2|Q2L6W2_CAEEL Trehalose 6-phosphate synthase protein 1,... 36 2.3
tr|Q8PEU0|Q8PEU0_XANAC Beta-galactosidase OS=Xanthomonas axonopo... 35 3.9
tr|Q3BMC6|Q3BMC6_XANC5 Beta-galactosidase OS=Xanthomonas campest... 35 3.9
tr|B0ELZ1|B0ELZ1_ENTDI Tyrosine protein kinase, putative OS=Enta... 35 5.1
tr|Q7S8N1|Q7S8N1_NEUCR Putative uncharacterized protein OS=Neuro... 35 5.1
tr|B2ZZ15|B2ZZ15_DANRE Microtubule-associated protein 1b (Fragme... 34 6.6
tr|B2ZZ14|B2ZZ14_DANRE Hypothetical microtubule-associated prote... 34 6.6
tr|A5PLA7|A5PLA7_DANRE LOC559032 protein (Fragment) OS=Danio rer... 34 6.6
tr|O45868|O45868_CAEEL Protein T27F6.4, confirmed by transcript ... 34 6.6

>tr|Q7YZT6|Q7YZT6_CAEEL Trehalose-6-phosphate synthase (Trehalose
6-phosphate synthase protein 1, isoform a)
OS=Caenorhabditis elegans GN=tps-1 PE=2 SV=1
Length = 1331

Score = 35.8 bits (81), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3

Query: 432 HNLQDYVYPSFDEPEILGEMWSLVNNDNY 518
HNL Y+ P FD+PE+L E W NY
Sbjct: 472 HNLPQYISPCFDDPELLREQWCAYVRVNY 500


>tr|Q2L6W2|Q2L6W2_CAEEL Trehalose 6-phosphate synthase protein 1,
isoform b OS=Caenorhabditis elegans GN=tps-1 PE=2 SV=1
Length = 1294

Score = 35.8 bits (81), Expect = 2.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +3

Query: 432 HNLQDYVYPSFDEPEILGEMWSLVNNDNY 518
HNL Y+ P FD+PE+L E W NY
Sbjct: 435 HNLPQYISPCFDDPELLREQWCAYVRVNY 463


>tr|Q8PEU0|Q8PEU0_XANAC Beta-galactosidase OS=Xanthomonas axonopodis
pv. citri GN=XAC4250 PE=4 SV=1
Length = 851

Score = 35.0 bits (79), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3

Query: 309 LPACGKISLPGSTNSQSYRIWAPPPTQSP 395
+PA G + GST + R+W PPPTQ P
Sbjct: 269 VPAGGTAHVQGSTRIDAPRLWGPPPTQQP 297


>tr|Q3BMC6|Q3BMC6_XANC5 Beta-galactosidase OS=Xanthomonas campestris
pv. vesicatoria (strain 85-10) GN=bga2 PE=4 SV=1
Length = 923

Score = 35.0 bits (79), Expect = 3.9
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3

Query: 309 LPACGKISLPGSTNSQSYRIWAPPPTQSP 395
+PA G + GST + R+W PPPTQ P
Sbjct: 341 VPAGGTAQVQGSTRIDAPRLWGPPPTQHP 369


>tr|B0ELZ1|B0ELZ1_ENTDI Tyrosine protein kinase, putative
OS=Entamoeba dispar SAW760 GN=EDI_160010 PE=4 SV=1
Length = 495

Score = 34.7 bits (78), Expect = 5.1
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3

Query: 462 FDEPEILGEMWSLVNNDNYCGLGSKEMAAPQLTSKFDGDYI 584
F++P+I+ EM +V+ + GL K++A +L+ K DG Y+
Sbjct: 373 FNDPKIIDEMRDIVSASYFSGLIDKKVAEGKLSGKVDGTYL 413


>tr|Q7S8N1|Q7S8N1_NEUCR Putative uncharacterized protein OS=Neurospora
crassa GN=NCU06583 PE=4 SV=2
Length = 1250

Score = 34.7 bits (78), Expect = 5.1
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +2

Query: 239 IMACERELNDDLKSTFDIPCFDTAPSMWEDQLAWQH--QFSELQDMGTPPDSES 394
I A ER L+ DLKS+ + FD + S+ L WQ + + L + PPD+ +
Sbjct: 1042 IAALERRLHRDLKSSGEFGVFDDSRSLLPRSLLWQRGAEVTSLNKISFPPDTHT 1095


>tr|B2ZZ15|B2ZZ15_DANRE Microtubule-associated protein 1b (Fragment)
OS=Danio rerio GN=map1b PE=2 SV=1
Length = 364

Score = 34.3 bits (77), Expect = 6.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3

Query: 411 KKREFDGHNLQDYVYPSFDEPEILGEMWSLVNNDNYCGLGSKEMAAP--QLTSKFDGDYI 584
K D HNLQD++Y + P IL EM L Y S E+++P L G ++
Sbjct: 198 KNSNLDKHNLQDFIYMKLNSPTILPEMEGLSEFTEYLS-ESVEISSPFDMLEPPTSGGFL 256

Query: 585 ELN 593
+L+
Sbjct: 257 KLS 259


>tr|B2ZZ14|B2ZZ14_DANRE Hypothetical microtubule-associated protein
1b OS=Danio rerio GN=map1b PE=2 SV=1
Length = 2033

Score = 34.3 bits (77), Expect = 6.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3

Query: 411 KKREFDGHNLQDYVYPSFDEPEILGEMWSLVNNDNYCGLGSKEMAAP--QLTSKFDGDYI 584
K D HNLQD++Y + P IL EM L Y S E+++P L G ++
Sbjct: 198 KNSNLDKHNLQDFIYMKLNSPTILPEMEGLSEFTEYLS-ESVEISSPFDMLEPPTSGGFL 256

Query: 585 ELN 593
+L+
Sbjct: 257 KLS 259


>tr|A5PLA7|A5PLA7_DANRE LOC559032 protein (Fragment) OS=Danio rerio
GN=LOC559032 PE=2 SV=1
Length = 589

Score = 34.3 bits (77), Expect = 6.6
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Frame = +3

Query: 411 KKREFDGHNLQDYVYPSFDEPEILGEMWSLVNNDNYCGLGSKEMAAP--QLTSKFDGDYI 584
K D HNLQD++Y + P IL EM L Y S E+++P L G ++
Sbjct: 198 KNSNLDKHNLQDFIYMKLNSPTILPEMEGLSEFTEYLS-ESVEISSPFDMLEPPTSGGFL 256

Query: 585 ELN 593
+L+
Sbjct: 257 KLS 259


>tr|O45868|O45868_CAEEL Protein T27F6.4, confirmed by transcript
evidence OS=Caenorhabditis elegans GN=T27F6.4 PE=2 SV=1
Length = 206

Score = 34.3 bits (77), Expect = 6.6
Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Frame = -2

Query: 407 SRQRGTLSRGGCPYPVTLRIGAARQADLPTCWELCQSMEYQK*TSNHHLILSHTPLSHL* 228
S Q +S GG P PVTL + + +++Y+K T+NHHL H+ H
Sbjct: 63 SSQSSVIS-GGVPVPVTLLELKKKDRSEKN---VVTNLKYRKPTANHHLDSVHSSSEH-- 116

Query: 227 QKHFLYHVDYVKLHQLP-SPSSHCCQF-H*VQPSQVQVFLETSNLQLGFE---DHKH 72
H +H+ L + P SPSS + V VF N L ++ DH H
Sbjct: 117 --HHHHHLSLSSLTRRPGSPSSSGYETDSLVDQENCDVFSSLFNSSLSYQSALDHHH 171