DK950864 |
Clone id |
TST38A01NGRL0009_N09 |
Library |
TST38 |
Length |
519 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N09. 5' end sequence. |
Accession |
DK950864 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL327Contig1 |
Sequence |
ATGCAGAGTAACCTCCCTTATCACAATGGCTCTCTCTCAAATCAGTGGAAGGATTGCTTT CTCCAATCTTGTTACCATCCTCGTGGTGATGGGTGTTTTGGCAATGGCCGGACAAAGTGC AATGGCACAAGTTGAACCTCCTACTCCAACTCCCACAACTGGTGATGATAATGCTGCTAC TTTAACCCCAGTTGCGTTTCTTGCCACGGCTTTTGCCTCTCTCCTTGTTGGAGTGTTTTT GAGCTACTAATTCTTTCAATCATGTGAGCACATTGAGAGGGAGTGGCAACTTTTGTATTT GACCTACCCTACATATGATGAGTTACGAGACACACCGTAGGAACTCCAGCTCCCATTTCC TACCTATACCTACCCCCCCCCTCATTCATTCATTTTCTAGAGTAAGAGATAAATTCTGGT GGTTTTTGTGAATAATAAATATTGACTAGTCTTCTTTCAAAAAAAAACNAAANAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P26010 |
Definition |
sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens |
Align length |
58 |
Score (bit) |
32.0 |
E-value |
1.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q22Z13 |
Definition |
tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210 |
Align length |
70 |
Score (bit) |
39.3 |
E-value |
0.099 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950864|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_N09, 5' (458 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ... 39 0.099 tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1 35 1.9 tr|A2DKY5|A2DKY5_TRIVA Transcriptional regulator, Sir2 family pr... 35 1.9 tr|A6FZ26|A6FZ26_9DELT Putative uncharacterized protein OS=Plesi... 35 2.4 tr|Q3K6P5|Q3K6P5_PSEPF Type 4 prepilin peptidase 1. Aspartic pep... 33 7.1 tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain P... 33 9.2 tr|B0Z2Q0|B0Z2Q0_9ASPA Maturase K (Fragment) OS=Erycina pumilio ... 33 9.2 tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis famil... 33 9.2
>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210 GN=TTHERM_00117540 PE=4 SV=2 Length = 2236
Score = 39.3 bits (90), Expect = 0.099 Identities = 22/70 (31%), Positives = 33/70 (47%) Frame = +1
Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204 NGS SN C LQ + P+ C T CN +++ C + +PSC++C Sbjct: 1637 NGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNSNK-----CIFCDPSCLTC 1687
Query: 205 HGFCLSPCWS 234 +G +S C S Sbjct: 1688 NGPQISNCTS 1697
Score = 35.4 bits (80), Expect = 1.4 Identities = 24/77 (31%), Positives = 33/77 (42%) Frame = +1
Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204 NGS SN C LQ + P+ C + CN S + C +PSC++C Sbjct: 1237 NGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL-----CKICDPSCLTC 1287
Query: 205 HGFCLSPCWSVFELLIL 255 +G S C S + L L Sbjct: 1288 NGSQSSNCTSCRQGLFL 1304
Score = 34.7 bits (78), Expect = 2.4 Identities = 24/77 (31%), Positives = 33/77 (42%) Frame = +1
Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204 NGS SN C LQ + P+ C T CN S++ C + SC++C Sbjct: 1037 NGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL-----CKVCDSSCLTC 1087
Query: 205 HGFCLSPCWSVFELLIL 255 +G S C S + L L Sbjct: 1088 NGSYSSNCTSCRQGLFL 1104
Score = 32.7 bits (73), Expect = 9.2 Identities = 23/77 (29%), Positives = 33/77 (42%) Frame = +1
Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204 NGS SN C LQ + P+ + C CN S++ C + SC++C Sbjct: 1437 NGSASNNCLSCELQRYFDPQSNKCL----ISCNSNQYPDVSSNL-----CKVCDSSCLTC 1487
Query: 205 HGFCLSPCWSVFELLIL 255 +G S C S + L L Sbjct: 1488 NGSQSSNCTSCRQGLFL 1504
>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1 Length = 309
Score = 35.0 bits (79), Expect = 1.9 Identities = 20/62 (32%), Positives = 29/62 (46%) Frame = -1
Query: 266 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 87 H++E I+ T + R+K + E + H+HHQL E P+HF P P Sbjct: 68 HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122
Query: 86 PR 81 PR Sbjct: 123 PR 124
>tr|A2DKY5|A2DKY5_TRIVA Transcriptional regulator, Sir2 family protein OS=Trichomonas vaginalis G3 GN=TVAG_146810 PE=4 SV=1 Length = 180
Score = 35.0 bits (79), Expect = 1.9 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +3
Query: 246 TNSFNHVSTLRGSG--NFCI*PTLHMMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDK-- 413 + ++ +V + GSG N C P LH + + +++ + F P TPP + R+ Sbjct: 14 SGNYKNVVVMTGSGICNACGIPDLHSIIPDLNKKAEETGFTPYMTPPFVFDIRFFRENPK 73
Query: 414 -FWW 422 FWW Sbjct: 74 PFWW 77
>tr|A6FZ26|A6FZ26_9DELT Putative uncharacterized protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_30235 PE=4 SV=1 Length = 74
Score = 34.7 bits (78), Expect = 2.4 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3
Query: 315 MMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDKFWW 422 +++ HRR + S + P+ P+IHSF V+D +W Sbjct: 20 VLASSVHRRLTLSQYFPLQLKPVIHSFDAVQDATFW 55
>tr|Q3K6P5|Q3K6P5_PSEPF Type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A OS=Pseudomonas fluorescens (strain Pf0-1) GN=Pf01_4822 PE=3 SV=1 Length = 290
Score = 33.1 bits (74), Expect = 7.1 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%) Frame = +2
Query: 167 DNAATLTPVAFLATAFA-SLLVGVFLSY*FFQSCEHIEREWQLLYLTYPTYDELRDTP*E 343 D +L P+AF+ TA L+VG FL+ ++ + +EREW+ +D L P E Sbjct: 4 DELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWR-----QQAHDVL-GLPGE 57
Query: 344 LQLPFPTYTYPPPHS 388 P PTY PHS Sbjct: 58 --APLPTYNLMLPHS 70
>tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain PCC 7120) GN=alr1329 PE=4 SV=1 Length = 470
Score = 32.7 bits (73), Expect = 9.2 Identities = 17/44 (38%), Positives = 23/44 (52%) Frame = +1
Query: 28 GSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 159 G + N W+D F +S HPRG CF + T N ++NS N Sbjct: 431 GLIWNPWRDIFNRSIEHPRGSICFKSYSTTLN----AKWNNSCN 470
>tr|B0Z2Q0|B0Z2Q0_9ASPA Maturase K (Fragment) OS=Erycina pumilio GN=matK PE=3 SV=1 Length = 245
Score = 32.7 bits (73), Expect = 9.2 Identities = 15/42 (35%), Positives = 26/42 (61%) Frame = +3
Query: 303 PTLHMMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDKFWWFL 428 P+LH++ H N+ S+ I + LI+ FS+ + +F+WFL Sbjct: 2 PSLHLLRLVIHESNNFSNL--ITSKKLIYVFSKRKKRFFWFL 41
>tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis familiaris GN=arsd PE=2 SV=1 Length = 579
Score = 32.7 bits (73), Expect = 9.2 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Frame = +1
Query: 19 YHNGSLSNQWKDCFLQSCYHPRGDG-CFGNGRTKCNGTS*TSYS 147 +H WK ++ +HP+G G C+G G C+G T +S Sbjct: 454 WHEKDSGRLWKVHYMTPRFHPKGAGACYGRGVCPCSGDGVTQHS 497
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