DK950864
Clone id TST38A01NGRL0009_N09
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
ATGCAGAGTAACCTCCCTTATCACAATGGCTCTCTCTCAAATCAGTGGAAGGATTGCTTT
CTCCAATCTTGTTACCATCCTCGTGGTGATGGGTGTTTTGGCAATGGCCGGACAAAGTGC
AATGGCACAAGTTGAACCTCCTACTCCAACTCCCACAACTGGTGATGATAATGCTGCTAC
TTTAACCCCAGTTGCGTTTCTTGCCACGGCTTTTGCCTCTCTCCTTGTTGGAGTGTTTTT
GAGCTACTAATTCTTTCAATCATGTGAGCACATTGAGAGGGAGTGGCAACTTTTGTATTT
GACCTACCCTACATATGATGAGTTACGAGACACACCGTAGGAACTCCAGCTCCCATTTCC
TACCTATACCTACCCCCCCCCTCATTCATTCATTTTCTAGAGTAAGAGATAAATTCTGGT
GGTTTTTGTGAATAATAAATATTGACTAGTCTTCTTTCAAAAAAAAACNAAANAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P26010
Definition sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens
Align length 58
Score (bit) 32.0
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950864|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N09, 5'
(458 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE... 32 1.3
sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation p... 32 1.3
sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE... 30 3.8
sp|O14029|SEC16_SCHPO COPII coat assembly protein sec16 OS=Schiz... 30 5.0
sp|Q9TMC8|MATK_GAGLU Maturase K OS=Gagea lutea GN=matK PE=3 SV=1 30 5.0
sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE... 30 6.6

>sp|P26010|ITB7_HUMAN Integrin beta-7 OS=Homo sapiens GN=ITGB7 PE=1
SV=1
Length = 798

Score = 32.0 bits (71), Expect = 1.3
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Frame = +1

Query: 61 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 228
+ SC P G C G+GR KCN C Y+ C C G C +PC
Sbjct: 602 MDSCISPEGGLCSGHGRCKCNRCQ-------------CLDGYYGALCDQCPG-CKTPC 645


>sp|P74218|HYPB_SYNY3 Probable hydrogenase nickel incorporation
protein hypB OS=Synechocystis sp. (strain PCC 6803)
GN=hypB PE=3 SV=1
Length = 285

Score = 32.0 bits (71), Expect = 1.3
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = -2

Query: 127 CHCTLSGHCQNTHHHEDGNKIGESNPSTDLRESHCDKGGYS 5
C C+ G ++HHH S+ D +E H G YS
Sbjct: 5 CGCSAVGTVAHSHHHHGDGNFAHSHDDHDQQEHHHHHGNYS 45


>sp|P05107|ITB2_HUMAN Integrin beta-2 OS=Homo sapiens GN=ITGB2 PE=1
SV=2
Length = 769

Score = 30.4 bits (67), Expect = 3.8
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +1

Query: 64 QSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSCHGFCLSPC 228
+ C +PR C G GR +CN H+ Y P C C G C SPC
Sbjct: 580 EGCLNPRRVECSGRGRCRCN------VCECHSG-----YQLPLCQECPG-CPSPC 622


>sp|O14029|SEC16_SCHPO COPII coat assembly protein sec16
OS=Schizosaccharomyces pombe GN=sec16 PE=1 SV=2
Length = 1995

Score = 30.0 bits (66), Expect = 5.0
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +3

Query: 306 TLHMMSYETHRRNSSS-HFLPIPTPPLIHS 392
+LH S E R NS FLP+P PL+HS
Sbjct: 1038 SLHKRSAELSRNNSPRPDFLPLPNQPLLHS 1067


>sp|Q9TMC8|MATK_GAGLU Maturase K OS=Gagea lutea GN=matK PE=3 SV=1
Length = 516

Score = 30.0 bits (66), Expect = 5.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +3

Query: 303 PTLHMMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDKFWWFL 428
P+LH++ + H+ ++ + FL IH FS+ + +WFL
Sbjct: 179 PSLHLLRFFLHKSHNMNSFL--KNNKTIHVFSKETKRLFWFL 218


>sp|P26011|ITB7_MOUSE Integrin beta-7 OS=Mus musculus GN=Itgb7 PE=1
SV=2
Length = 806

Score = 29.6 bits (65), Expect = 6.6
Identities = 19/58 (32%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
Frame = +1

Query: 61 LQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CC--YFNPSCVSCHGFCLSPC 228
+ SC P G C G+G KCN C Y+ C C G C SPC
Sbjct: 602 VDSCVSPEGGLCSGHGYCKCNRCQ-------------CLDGYYGALCDQCLG-CKSPC 645


tr_hit_id Q22Z13
Definition tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family protein OS=Tetrahymena thermophila SB210
Align length 70
Score (bit) 39.3
E-value 0.099
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950864|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N09, 5'
(458 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family ... 39 0.099
tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1 35 1.9
tr|A2DKY5|A2DKY5_TRIVA Transcriptional regulator, Sir2 family pr... 35 1.9
tr|A6FZ26|A6FZ26_9DELT Putative uncharacterized protein OS=Plesi... 35 2.4
tr|Q3K6P5|Q3K6P5_PSEPF Type 4 prepilin peptidase 1. Aspartic pep... 33 7.1
tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain P... 33 9.2
tr|B0Z2Q0|B0Z2Q0_9ASPA Maturase K (Fragment) OS=Erycina pumilio ... 33 9.2
tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis famil... 33 9.2

>tr|Q22Z13|Q22Z13_TETTH Zinc finger domain, LSD1 subclass family
protein OS=Tetrahymena thermophila SB210
GN=TTHERM_00117540 PE=4 SV=2
Length = 2236

Score = 39.3 bits (90), Expect = 0.099
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1

Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204
NGS SN C LQ + P+ C T CN +++ C + +PSC++C
Sbjct: 1637 NGSTSNNCLSCELQRYFDPQSSKCL----TSCNSNQYHDVNSNK-----CIFCDPSCLTC 1687

Query: 205 HGFCLSPCWS 234
+G +S C S
Sbjct: 1688 NGPQISNCTS 1697



Score = 35.4 bits (80), Expect = 1.4
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +1

Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204
NGS SN C LQ + P+ C + CN S + C +PSC++C
Sbjct: 1237 NGSSSNNCLSCELQRYFDPQSSKCLSS----CNSNQYPDISTNL-----CKICDPSCLTC 1287

Query: 205 HGFCLSPCWSVFELLIL 255
+G S C S + L L
Sbjct: 1288 NGSQSSNCTSCRQGLFL 1304



Score = 34.7 bits (78), Expect = 2.4
Identities = 24/77 (31%), Positives = 33/77 (42%)
Frame = +1

Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204
NGS SN C LQ + P+ C T CN S++ C + SC++C
Sbjct: 1037 NGSSSNNCLSCELQRYFDPQSSKCI----TSCNSNQYPDVSSNL-----CKVCDSSCLTC 1087

Query: 205 HGFCLSPCWSVFELLIL 255
+G S C S + L L
Sbjct: 1088 NGSYSSNCTSCRQGLFL 1104



Score = 32.7 bits (73), Expect = 9.2
Identities = 23/77 (29%), Positives = 33/77 (42%)
Frame = +1

Query: 25 NGSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHNW***CCYFNPSCVSC 204
NGS SN C LQ + P+ + C CN S++ C + SC++C
Sbjct: 1437 NGSASNNCLSCELQRYFDPQSNKCL----ISCNSNQYPDVSSNL-----CKVCDSSCLTC 1487

Query: 205 HGFCLSPCWSVFELLIL 255
+G S C S + L L
Sbjct: 1488 NGSQSSNCTSCRQGLFL 1504


>tr|Q7SZ84|Q7SZ84_XENLA MGC64444 protein OS=Xenopus laevis PE=2 SV=1
Length = 309

Score = 35.0 bits (79), Expect = 1.9
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -1

Query: 266 HMIERISSSKTLQQGERQKPWQETQLGLK*QHYHHQLWELE*EVQLVPLHFVRPLPKHPS 87
H++E I+ T + R+K + E + H+HHQL E P+HF P P
Sbjct: 68 HLLEEIARPHTWEGTHRKKNYVEPIHQISPMHFHHQLPPRE-----PPIHFYPPPPPQEP 122

Query: 86 PR 81
PR
Sbjct: 123 PR 124


>tr|A2DKY5|A2DKY5_TRIVA Transcriptional regulator, Sir2 family
protein OS=Trichomonas vaginalis G3 GN=TVAG_146810 PE=4
SV=1
Length = 180

Score = 35.0 bits (79), Expect = 1.9
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3

Query: 246 TNSFNHVSTLRGSG--NFCI*PTLHMMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDK-- 413
+ ++ +V + GSG N C P LH + + +++ + F P TPP + R+
Sbjct: 14 SGNYKNVVVMTGSGICNACGIPDLHSIIPDLNKKAEETGFTPYMTPPFVFDIRFFRENPK 73

Query: 414 -FWW 422
FWW
Sbjct: 74 PFWW 77


>tr|A6FZ26|A6FZ26_9DELT Putative uncharacterized protein
OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_30235 PE=4 SV=1
Length = 74

Score = 34.7 bits (78), Expect = 2.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3

Query: 315 MMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDKFWW 422
+++ HRR + S + P+ P+IHSF V+D +W
Sbjct: 20 VLASSVHRRLTLSQYFPLQLKPVIHSFDAVQDATFW 55


>tr|Q3K6P5|Q3K6P5_PSEPF Type 4 prepilin peptidase 1. Aspartic
peptidase. MEROPS family A24A OS=Pseudomonas fluorescens
(strain Pf0-1) GN=Pf01_4822 PE=3 SV=1
Length = 290

Score = 33.1 bits (74), Expect = 7.1
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +2

Query: 167 DNAATLTPVAFLATAFA-SLLVGVFLSY*FFQSCEHIEREWQLLYLTYPTYDELRDTP*E 343
D +L P+AF+ TA L+VG FL+ ++ + +EREW+ +D L P E
Sbjct: 4 DELFSLYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLEREWR-----QQAHDVL-GLPGE 57

Query: 344 LQLPFPTYTYPPPHS 388
P PTY PHS
Sbjct: 58 --APLPTYNLMLPHS 70


>tr|Q8YX86|Q8YX86_ANASP Alr1329 protein OS=Anabaena sp. (strain PCC
7120) GN=alr1329 PE=4 SV=1
Length = 470

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +1

Query: 28 GSLSNQWKDCFLQSCYHPRGDGCFGNGRTKCNGTS*TSYSNSHN 159
G + N W+D F +S HPRG CF + T N ++NS N
Sbjct: 431 GLIWNPWRDIFNRSIEHPRGSICFKSYSTTLN----AKWNNSCN 470


>tr|B0Z2Q0|B0Z2Q0_9ASPA Maturase K (Fragment) OS=Erycina pumilio
GN=matK PE=3 SV=1
Length = 245

Score = 32.7 bits (73), Expect = 9.2
Identities = 15/42 (35%), Positives = 26/42 (61%)
Frame = +3

Query: 303 PTLHMMSYETHRRNSSSHFLPIPTPPLIHSFSRVRDKFWWFL 428
P+LH++ H N+ S+ I + LI+ FS+ + +F+WFL
Sbjct: 2 PSLHLLRLVIHESNNFSNL--ITSKKLIYVFSKRKKRFFWFL 41


>tr|Q32KI2|Q32KI2_CANFA Arylsulfatase D (Fragment) OS=Canis
familiaris GN=arsd PE=2 SV=1
Length = 579

Score = 32.7 bits (73), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1

Query: 19 YHNGSLSNQWKDCFLQSCYHPRGDG-CFGNGRTKCNGTS*TSYS 147
+H WK ++ +HP+G G C+G G C+G T +S
Sbjct: 454 WHEKDSGRLWKVHYMTPRFHPKGAGACYGRGVCPCSGDGVTQHS 497