DK950874
Clone id TST38A01NGRL0009_N22
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CACTTCTCGACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAG
TAAATGTGAGAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATA
AAGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTA
AAAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGT
TTATTAATAGAAATAAATCGATTCTTTCCGGATGCTTTATTATTTCCATTTCCCTAACTT
ATTGTTATTAACTAAACCAAAGGAGCCGTGTAGGAACCATACGAAGTGAGAACTCTATGG
TTCGTCATACACGTAATAATGACTCAATTTAGTGATGGGAGTGTTTAATCTATTTACTTC
ATAGGTCGAAACTTCGTAAGTAGTTCGTTTCTATTGCTATGGATCTACATGCGACCCTCA
CCCCCTCTTTTTGGGGAAACTAATTAAATTAGAGTACATCTGATTTTATGGCCAATACTA
AAGATGCAAGGGTAACTATTGCTTTGGAATGTACAAGTTGTATTCAGAGAAAAACCAGTG
GAAAATCCGCGGGTCTTTGCCGATACACTACACGTAAAAATCGTCGTAACACACCCGCTC
G
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 44
Score (bit) 92.8
E-value 1.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950874|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N22, 5'
(661 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS... 93 1e-18
sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS... 65 4e-10
sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic OS... 60 1e-08
sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic OS... 59 2e-08
sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic OS... 59 2e-08
sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic OS... 59 3e-08
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS... 58 4e-08
sp|P41612|RK33_PINTH 50S ribosomal protein L33, chloroplastic OS... 57 7e-08
sp|Q7GUD1|RK33_PINKO 50S ribosomal protein L33, chloroplastic OS... 57 7e-08
sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS... 57 9e-08
sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic OS... 57 9e-08
sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic OS... 57 9e-08
sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic OS... 57 1e-07
sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic OS... 57 1e-07
sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic OS... 57 1e-07
sp|P30068|RK33_EPIVI 50S ribosomal protein L33, plastid OS=Epifa... 57 1e-07
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS... 57 1e-07
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS... 57 1e-07
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS... 56 1e-07
sp|Q2QD68|RK33_CUCSA 50S ribosomal protein L33, chloroplastic OS... 56 2e-07
sp|A2T354|RK33_ANGEV 50S ribosomal protein L33, chloroplastic OS... 56 2e-07
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS... 56 2e-07
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS... 56 2e-07

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
Length = 66

Score = 92.8 bits (229), Expect = 1e-18
Identities = 44/44 (100%), Positives = 44/44 (100%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA
Sbjct: 1 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 44


>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
Length = 42

Score = 64.7 bits (156), Expect = 4e-10
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
MQHVKIYLSTAPVVATIWFGLLAGLLIEINR
Sbjct: 1 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 31


>sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic
OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3
SV=1
Length = 66

Score = 59.7 bits (143), Expect = 1e-08
Identities = 25/44 (56%), Positives = 35/44 (79%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KDARV++ LECTSC+++ + +S G+ RY T+KNRRNTP+
Sbjct: 1 MAKGKDARVSVILECTSCVRKNVNKESRGISRYITQKNRRNTPS 44


>sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic
OS=Morus indica GN=rpl33 PE=3 SV=1
Length = 66

Score = 59.3 bits (142), Expect = 2e-08
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KDARVTI LECTSC++ + + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKGKDARVTIILECTSCLRNRVNKESRGISRYITQKNRHNTPS 44


>sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic
OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1
Length = 66

Score = 59.3 bits (142), Expect = 2e-08
Identities = 28/43 (65%), Positives = 31/43 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA + RVTI LECTSC Q + KS G+ RYTTRKNRRNTP
Sbjct: 1 MAKGGNVRVTITLECTSCTQDSVNKKSPGISRYTTRKNRRNTP 43


>sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic
OS=Carica papaya GN=rpl33 PE=3 SV=1
Length = 66

Score = 58.5 bits (140), Expect = 3e-08
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KDARVTI LECTSC++ + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic
OS=Lepidium virginicum GN=rpl33 PE=3 SV=1
Length = 66

Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KD RVTI LECTSC++ +SAG+ RY T+KNR NTP+
Sbjct: 1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPS 44


>sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic
OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1
Length = 66

Score = 58.2 bits (139), Expect = 4e-08
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA +KD RVTI LECTSC++ + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic
OS=Gossypium barbadense GN=rpl33 PE=3 SV=1
Length = 66

Score = 58.2 bits (139), Expect = 4e-08
Identities = 25/44 (56%), Positives = 33/44 (75%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA +KD RVTI LECTSC++ + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic
OS=Draba nemorosa GN=rpl33 PE=3 SV=1
Length = 66

Score = 58.2 bits (139), Expect = 4e-08
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KD RVTI LECTSC++ +SAG+ RY T+KNR NTP+
Sbjct: 1 MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPS 44


tr_hit_id B7ZIQ6
Definition tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria davidiana
Align length 43
Score (bit) 58.9
E-value 3.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950874|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N22, 5'
(661 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria david... 59 3e-07
tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium subter... 56 2e-06
tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif... 56 2e-06
tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment) OS=Y... 56 2e-06
tr|Q06R44|Q06R44_9LAMI 50S ribosomal protein L33 OS=Forsythia eu... 56 2e-06
tr|Q06QZ1|Q06QZ1_9LAMI 50S ribosomal protein L33 OS=Jasminum aby... 56 2e-06
tr|B2D074|B2D074_OLEEU Ribosomal protein L33 OS=Olea europaea GN... 56 2e-06
tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus banca... 55 3e-06
tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment) OS=G... 55 4e-06
tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinife... 55 4e-06
tr|B0LP34|B0LP34_9CARY 50S ribosomal protein L33 OS=Silene aegyp... 55 5e-06
tr|A9QC76|A9QC76_TRACE 50S ribosomal protein L33 (Fragment) OS=T... 55 5e-06
tr|B4Y1V2|B4Y1V2_VISVU Ribosomal protein L33 (Fragment) OS=Visca... 54 7e-06
tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia lepidozi... 54 7e-06
tr|B0LNQ8|B0LNQ8_SILLA 50S ribosomal protein L33 OS=Silene latif... 54 7e-06
tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment) OS=T... 54 9e-06
tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1 54 9e-06
tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment) OS=A... 54 1e-05
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis... 54 1e-05
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid... 54 1e-05
tr|B6RRU3|B6RRU3_9CARY Ribosomal protein L33 OS=Eudianthe laeta ... 53 1e-05
tr|B0LN85|B0LN85_LYCCH 50S ribosomal protein L33 OS=Lychnis chal... 53 1e-05
tr|A9QC02|A9QC02_9ASTR 50S ribosomal protein L33 (Fragment) OS=S... 53 1e-05
tr|A9QAW1|A9QAW1_9APIA 50S ribosomal protein L33 (Fragment) OS=A... 53 1e-05
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi... 53 1e-05
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu... 53 1e-05
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy... 53 1e-05
tr|B4Y1W1|B4Y1W1_AGRGI Ribosomal protein L33 OS=Agrostemma githa... 53 2e-05
tr|B4Y1V9|B4Y1V9_9CARY Ribosomal protein L33 OS=Atocion rupestre... 53 2e-05
tr|B4Y1V7|B4Y1V7_9CARY Ribosomal protein L33 OS=Lychnis flos-cuc... 53 2e-05

>tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria
davidiana GN=rpl33 PE=4 SV=1
Length = 68

Score = 58.9 bits (141), Expect = 3e-07
Identities = 28/43 (65%), Positives = 30/43 (69%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA + D RVTI LECTSC Q K G+ RYTTRKNRRNTP
Sbjct: 1 MAKSGDVRVTITLECTSCTQDSVYKKFPGISRYTTRKNRRNTP 43


>tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium
subterraneum GN=rpl33 PE=4 SV=1
Length = 66

Score = 56.2 bits (134), Expect = 2e-06
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KD R+T+ LECTSC ++ + KS G+ RY T+KNR NTP+
Sbjct: 1 MAKGKDIRITVILECTSCDKKSVNKKSRGISRYITQKNRHNTPS 44


>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
parvifolium GN=psaJ PE=4 SV=1
Length = 43

Score = 56.2 bits (134), Expect = 2e-06
Identities = 26/31 (83%), Positives = 28/31 (90%)
Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1 MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment)
OS=Yucca schidigera GN=rpl33 PE=3 SV=1
Length = 66

Score = 55.8 bits (133), Expect = 2e-06
Identities = 25/44 (56%), Positives = 31/44 (70%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA KD RV + LECTSCIQ + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKGKDVRVRVILECTSCIQNGVNKESPGISRYITQKNRHNTPS 44


>tr|Q06R44|Q06R44_9LAMI 50S ribosomal protein L33 OS=Forsythia
europaea GN=rpl33 PE=3 SV=1
Length = 66

Score = 55.8 bits (133), Expect = 2e-06
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA KDARVT+ LECTSC++ S G+ RY T+KNR NTP
Sbjct: 1 MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|Q06QZ1|Q06QZ1_9LAMI 50S ribosomal protein L33 OS=Jasminum
abyssinicum GN=rpl33 PE=3 SV=1
Length = 66

Score = 55.8 bits (133), Expect = 2e-06
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA KDARVT+ LECTSC++ S G+ RY T+KNR NTP
Sbjct: 1 MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|B2D074|B2D074_OLEEU Ribosomal protein L33 OS=Olea europaea
GN=rpl33 PE=4 SV=1
Length = 66

Score = 55.8 bits (133), Expect = 2e-06
Identities = 25/43 (58%), Positives = 30/43 (69%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA KDARVT+ LECTSC++ S G+ RY T+KNR NTP
Sbjct: 1 MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus bancanus
GN=rpl33 PE=4 SV=1
Length = 66

Score = 55.5 bits (132), Expect = 3e-06
Identities = 24/44 (54%), Positives = 32/44 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
MA +KD RV I LECTSC++ + +S G+ RY T+KNR NTP+
Sbjct: 1 MAKSKDVRVMIILECTSCVRNGINKESTGISRYITQKNRHNTPS 44


>tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment)
OS=Ginkgo biloba GN=rpl33 PE=3 SV=1
Length = 66

Score = 55.1 bits (131), Expect = 4e-06
Identities = 27/43 (62%), Positives = 28/43 (65%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA D RVTI ECTSC Q K G+ RYTTRKNRRNTP
Sbjct: 1 MAKGGDVRVTITSECTSCNQDSVDKKFPGVSRYTTRKNRRNTP 43


>tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinifera
GN=rpl33 PE=3 SV=1
Length = 66

Score = 55.1 bits (131), Expect = 4e-06
Identities = 23/43 (53%), Positives = 31/43 (72%)
Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
MA +KDAR+ + LECTSC++ + +S G+ RY T KNR NTP
Sbjct: 1 MAKSKDARIRVLLECTSCVRDGVNKESTGISRYITEKNRHNTP 43