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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950874
Clone id TST38A01NGRL0009_N22
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CACTTCTCGACTTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAG
TAAATGTGAGAATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATA
AAGGCAAGTAGGTAGGGAAATAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTA
AAAATATATCTTTCCACAGCCCCTGTTGTAGCTACAATATGGTTTGGCTTACTGGCTGGT
TTATTAATAGAAATAAATCGATTCTTTCCGGATGCTTTATTATTTCCATTTCCCTAACTT
ATTGTTATTAACTAAACCAAAGGAGCCGTGTAGGAACCATACGAAGTGAGAACTCTATGG
TTCGTCATACACGTAATAATGACTCAATTTAGTGATGGGAGTGTTTAATCTATTTACTTC
ATAGGTCGAAACTTCGTAAGTAGTTCGTTTCTATTGCTATGGATCTACATGCGACCCTCA
CCCCCTCTTTTTGGGGAAACTAATTAAATTAGAGTACATCTGATTTTATGGCCAATACTA
AAGATGCAAGGGTAACTATTGCTTTGGAATGTACAAGTTGTATTCAGAGAAAAACCAGTG
GAAAATCCGCGGGTCTTTGCCGATACACTACACGTAAAAATCGTCGTAACACACCCGCTC
G
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 44
Score (bit) 92.8
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950874|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N22, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS...    93   1e-18
sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    65   4e-10
sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic OS...    60   1e-08
sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic OS...    59   2e-08
sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic OS...    59   2e-08
sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic OS...    59   3e-08
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS...    58   4e-08
sp|P41612|RK33_PINTH 50S ribosomal protein L33, chloroplastic OS...    57   7e-08
sp|Q7GUD1|RK33_PINKO 50S ribosomal protein L33, chloroplastic OS...    57   7e-08
sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS...    57   9e-08
sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic OS...    57   9e-08
sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic OS...    57   9e-08
sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic OS...    57   1e-07
sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic OS...    57   1e-07
sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic OS...    57   1e-07
sp|P30068|RK33_EPIVI 50S ribosomal protein L33, plastid OS=Epifa...    57   1e-07
sp|Q1ACI1|PSAJ_CHAVU Photosystem I reaction center subunit IX OS...    57   1e-07
sp|Q8M9Y5|PSAJ_CHAGL Photosystem I reaction center subunit IX OS...    57   1e-07
sp|A6BM27|PSAJ_GNEPA Photosystem I reaction center subunit IX OS...    56   1e-07
sp|Q2QD68|RK33_CUCSA 50S ribosomal protein L33, chloroplastic OS...    56   2e-07
sp|A2T354|RK33_ANGEV 50S ribosomal protein L33, chloroplastic OS...    56   2e-07
sp|Q8WI01|PSAJ_PSINU Photosystem I reaction center subunit IX OS...    56   2e-07
sp|Q6YXM2|PSAJ_PHYPA Photosystem I reaction center subunit IX OS...    56   2e-07

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
          Length = 66

 Score = 92.8 bits (229), Expect = 1e-18
 Identities = 44/44 (100%), Positives = 44/44 (100%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA
Sbjct: 1   MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 44


>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 64.7 bits (156), Expect = 4e-10
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQHVKIYLSTAPVVATIWFGLLAGLLIEINR
Sbjct: 1   MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 31


>sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic
           OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3
           SV=1
          Length = 66

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 25/44 (56%), Positives = 35/44 (79%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KDARV++ LECTSC+++  + +S G+ RY T+KNRRNTP+
Sbjct: 1   MAKGKDARVSVILECTSCVRKNVNKESRGISRYITQKNRRNTPS 44


>sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic
           OS=Morus indica GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KDARVTI LECTSC++ + + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKGKDARVTIILECTSCLRNRVNKESRGISRYITQKNRHNTPS 44


>sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic
           OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 28/43 (65%), Positives = 31/43 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA   + RVTI LECTSC Q   + KS G+ RYTTRKNRRNTP
Sbjct: 1   MAKGGNVRVTITLECTSCTQDSVNKKSPGISRYTTRKNRRNTP 43


>sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic
           OS=Carica papaya GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 58.5 bits (140), Expect = 3e-08
 Identities = 26/44 (59%), Positives = 33/44 (75%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KDARVTI LECTSC++   + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKGKDARVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic
           OS=Lepidium virginicum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KD RVTI LECTSC++     +SAG+ RY T+KNR NTP+
Sbjct: 1   MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPS 44


>sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic
           OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA +KD RVTI LECTSC++   + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic
           OS=Gossypium barbadense GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 25/44 (56%), Positives = 33/44 (75%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA +KD RVTI LECTSC++   + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKSKDVRVTIILECTSCVRNGVNKESTGISRYITQKNRHNTPS 44


>sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic
           OS=Draba nemorosa GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 58.2 bits (139), Expect = 4e-08
 Identities = 26/44 (59%), Positives = 32/44 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KD RVTI LECTSC++     +SAG+ RY T+KNR NTP+
Sbjct: 1   MAKGKDVRVTIILECTSCVRNDIKKESAGISRYITQKNRHNTPS 44
tr_hit_id B7ZIQ6
Definition tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria davidiana
Align length 43
Score (bit) 58.9
E-value 3.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950874|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_N22, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria david...    59   3e-07
tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium subter...    56   2e-06
tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum parvif...    56   2e-06
tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment) OS=Y...    56   2e-06
tr|Q06R44|Q06R44_9LAMI 50S ribosomal protein L33 OS=Forsythia eu...    56   2e-06
tr|Q06QZ1|Q06QZ1_9LAMI 50S ribosomal protein L33 OS=Jasminum aby...    56   2e-06
tr|B2D074|B2D074_OLEEU Ribosomal protein L33 OS=Olea europaea GN...    56   2e-06
tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus banca...    55   3e-06
tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment) OS=G...    55   4e-06
tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinife...    55   4e-06
tr|B0LP34|B0LP34_9CARY 50S ribosomal protein L33 OS=Silene aegyp...    55   5e-06
tr|A9QC76|A9QC76_TRACE 50S ribosomal protein L33 (Fragment) OS=T...    55   5e-06
tr|B4Y1V2|B4Y1V2_VISVU Ribosomal protein L33 (Fragment) OS=Visca...    54   7e-06
tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia lepidozi...    54   7e-06
tr|B0LNQ8|B0LNQ8_SILLA 50S ribosomal protein L33 OS=Silene latif...    54   7e-06
tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment) OS=T...    54   9e-06
tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1            54   9e-06
tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment) OS=A...    54   1e-05
tr|B7ZIH4|B7ZIH4_EPHEU Photosystem I subunit IX OS=Ephedra equis...    54   1e-05
tr|B3IWG8|B3IWG8_TAKLE Photosystem I subunit IX OS=Takakia lepid...    54   1e-05
tr|B6RRU3|B6RRU3_9CARY Ribosomal protein L33 OS=Eudianthe laeta ...    53   1e-05
tr|B0LN85|B0LN85_LYCCH 50S ribosomal protein L33 OS=Lychnis chal...    53   1e-05
tr|A9QC02|A9QC02_9ASTR 50S ribosomal protein L33 (Fragment) OS=S...    53   1e-05
tr|A9QAW1|A9QAW1_9APIA 50S ribosomal protein L33 (Fragment) OS=A...    53   1e-05
tr|Q4FFL9|Q4FFL9_GINBI Photosystem I subunit IX (Fragment) OS=Gi...    53   1e-05
tr|Q4FFL5|Q4FFL5_9ASPA Photosystem I subunit IX (Fragment) OS=Yu...    53   1e-05
tr|A9QB35|A9QB35_9SPER Photosystem I subunit IX (Fragment) OS=Cy...    53   1e-05
tr|B4Y1W1|B4Y1W1_AGRGI Ribosomal protein L33 OS=Agrostemma githa...    53   2e-05
tr|B4Y1V9|B4Y1V9_9CARY Ribosomal protein L33 OS=Atocion rupestre...    53   2e-05
tr|B4Y1V7|B4Y1V7_9CARY Ribosomal protein L33 OS=Lychnis flos-cuc...    53   2e-05

>tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria
           davidiana GN=rpl33 PE=4 SV=1
          Length = 68

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 28/43 (65%), Positives = 30/43 (69%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA + D RVTI LECTSC Q     K  G+ RYTTRKNRRNTP
Sbjct: 1   MAKSGDVRVTITLECTSCTQDSVYKKFPGISRYTTRKNRRNTP 43


>tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium
           subterraneum GN=rpl33 PE=4 SV=1
          Length = 66

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KD R+T+ LECTSC ++  + KS G+ RY T+KNR NTP+
Sbjct: 1   MAKGKDIRITVILECTSCDKKSVNKKSRGISRYITQKNRHNTPS 44


>tr|B7ZI94|B7ZI94_GNEPA Photosystem I subunit IX OS=Gnetum
           parvifolium GN=psaJ PE=4 SV=1
          Length = 43

 Score = 56.2 bits (134), Expect = 2e-06
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +1

Query: 169 MQHVKIYLSTAPVVATIWFGLLAGLLIEINR 261
           MQ +K YLSTAPV+AT WFGLLAGLLIEINR
Sbjct: 1   MQDIKTYLSTAPVLATFWFGLLAGLLIEINR 31


>tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment)
           OS=Yucca schidigera GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/44 (56%), Positives = 31/44 (70%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA  KD RV + LECTSCIQ   + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKGKDVRVRVILECTSCIQNGVNKESPGISRYITQKNRHNTPS 44


>tr|Q06R44|Q06R44_9LAMI 50S ribosomal protein L33 OS=Forsythia
           europaea GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/43 (58%), Positives = 30/43 (69%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA  KDARVT+ LECTSC++      S G+ RY T+KNR NTP
Sbjct: 1   MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|Q06QZ1|Q06QZ1_9LAMI 50S ribosomal protein L33 OS=Jasminum
           abyssinicum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/43 (58%), Positives = 30/43 (69%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA  KDARVT+ LECTSC++      S G+ RY T+KNR NTP
Sbjct: 1   MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|B2D074|B2D074_OLEEU Ribosomal protein L33 OS=Olea europaea
           GN=rpl33 PE=4 SV=1
          Length = 66

 Score = 55.8 bits (133), Expect = 2e-06
 Identities = 25/43 (58%), Positives = 30/43 (69%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA  KDARVT+ LECTSC++      S G+ RY T+KNR NTP
Sbjct: 1   MAKGKDARVTVILECTSCVRNGVKKVSRGISRYITQKNRHNTP 43


>tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus bancanus
           GN=rpl33 PE=4 SV=1
          Length = 66

 Score = 55.5 bits (132), Expect = 3e-06
 Identities = 24/44 (54%), Positives = 32/44 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTPA 659
           MA +KD RV I LECTSC++   + +S G+ RY T+KNR NTP+
Sbjct: 1   MAKSKDVRVMIILECTSCVRNGINKESTGISRYITQKNRHNTPS 44


>tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment)
           OS=Ginkgo biloba GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 27/43 (62%), Positives = 28/43 (65%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA   D RVTI  ECTSC Q     K  G+ RYTTRKNRRNTP
Sbjct: 1   MAKGGDVRVTITSECTSCNQDSVDKKFPGVSRYTTRKNRRNTP 43


>tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinifera
           GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 55.1 bits (131), Expect = 4e-06
 Identities = 23/43 (53%), Positives = 31/43 (72%)
 Frame = +3

Query: 528 MANTKDARVTIALECTSCIQRKTSGKSAGLCRYTTRKNRRNTP 656
           MA +KDAR+ + LECTSC++   + +S G+ RY T KNR NTP
Sbjct: 1   MAKSKDARIRVLLECTSCVRDGVNKESTGISRYITEKNRHNTP 43