DK950876 |
Clone id |
TST38A01NGRL0009_N24 |
Library |
TST38 |
Length |
637 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_N24. 5' end sequence. |
Accession |
DK950876 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
AAAGTGGATGGTCAAGAGAAAAGGATCTTTTTTGGAGGAGCTAAACTCAAAGAATGAAGA GAAGCATGGAAAGAAGCCCTATGCAGCCTATGTAGCCCCCAAATCACCCAATTTCAAAGA TGAAGTCAAAAAGCCCAAACGAACCTTCAAGAAGCTGTCTAAGGAGGAGGTGGAGCAACG CATCAAAGAAGGGAGATACTTCCAATGTGGACAAAAAGGGCACATGGCATGGGAATGCAA AAAGAAGAAAGCTGAAAAGAGCGTAGAAGAAAAGGAGACATCGTCGCCAAAGGTCGACAC CATAGCCGATGTCCAAGTTCCGGAGTCGAGCCAAGACACCAAAGAAAGACAACCTTCTGG TAAGCTAAGAAACCAACCTATGGTAGTTATGTTTGACTTTGGGTCTACTCATAACTTCAT TTCTAAAGAAGTAGCACGATCAATTGGCCTAACAAATAAAGACAAAGGTATGTTTATTAT TGCTAATACACTTTTCAAGCAACAAGAACAAGTTGTACCTACTAAGGATCCTTTGCGGAT TCACATCAAAGGATACTTGGATCATGTGGACTTTCTCATAGGTCCTACTCAAGGGTGCAA TGTGATGTTGGGGATGCCTTAGATGCACAAAGTCAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q28092 |
Definition |
sp|Q28092|CYLC2_BOVIN Cylicin-2 OS=Bos taurus |
Align length |
51 |
Score (bit) |
35.0 |
E-value |
0.33 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QWB9 |
Definition |
tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
97 |
Score (bit) |
50.4 |
E-value |
9.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950876|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0009_N24, 5' (637 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genom... 50 9e-05 tr|A5B1A3|A5B1A3_VITVI Putative uncharacterized protein OS=Vitis... 46 0.002 tr|A7Q471|A7Q471_VITVI Chromosome chr9 scaffold_49, whole genome... 45 0.003 tr|A5AQF1|A5AQF1_VITVI Putative uncharacterized protein OS=Vitis... 44 0.006 tr|A5B4X8|A5B4X8_VITVI Putative uncharacterized protein OS=Vitis... 44 0.008 tr|A5BDH9|A5BDH9_VITVI Putative uncharacterized protein OS=Vitis... 43 0.018 tr|A5BX03|A5BX03_VITVI Putative uncharacterized protein OS=Vitis... 42 0.024 tr|A5B1B2|A5B1B2_VITVI Putative uncharacterized protein OS=Vitis... 42 0.024 tr|A5C5K2|A5C5K2_VITVI Putative uncharacterized protein OS=Vitis... 42 0.031 tr|A5AXU2|A5AXU2_VITVI Putative uncharacterized protein OS=Vitis... 42 0.041 tr|A5CAU1|A5CAU1_VITVI Putative uncharacterized protein OS=Vitis... 41 0.070 tr|A5BJ41|A5BJ41_VITVI Putative uncharacterized protein OS=Vitis... 41 0.070 tr|A5BEK1|A5BEK1_VITVI Putative uncharacterized protein OS=Vitis... 41 0.070 tr|B8B0B5|B8B0B5_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.091 tr|Q9XEM5|Q9XEM5_ORYSI Polyprotein OS=Oryza sativa subsp. indica... 40 0.12 tr|Q2R4T1|Q2R4T1_ORYSJ Retrotransposon protein, putative, Ty3-gy... 40 0.12 tr|Q01HD0|Q01HD0_ORYSA H0807C06-H0308C08.3 protein OS=Oryza sati... 40 0.12 tr|B5G4Y0|B5G4Y0_TRIMO Putative gag-pol polyprotein OS=Triticum ... 40 0.12 tr|A5B9K1|A5B9K1_VITVI Putative uncharacterized protein OS=Vitis... 40 0.12 tr|Q94BM2|Q94BM2_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE... 40 0.16 tr|Q94BM1|Q94BM1_HORVU Gag-pol polyprotein OS=Hordeum vulgare PE... 40 0.16 tr|Q8W2R5|Q8W2R5_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 40 0.16 tr|Q8H914|Q8H914_ORYSJ Polyprotein OS=Oryza sativa subsp. japoni... 40 0.16 tr|Q7XGR4|Q7XGR4_ORYSJ Os10g0151700 protein OS=Oryza sativa subs... 40 0.16 tr|Q109K6|Q109K6_ORYSJ Retrotransposon protein, putative, Ty3-gy... 40 0.16 tr|A5AZ16|A5AZ16_VITVI Putative uncharacterized protein OS=Vitis... 39 0.20 tr|A5ADJ3|A5ADJ3_VITVI Putative uncharacterized protein OS=Vitis... 39 0.20 tr|Q947Y6|Q947Y6_ORYSA Putative retroelement OS=Oryza sativa GN=... 39 0.27 tr|Q8SAZ4|Q8SAZ4_ORYSA Putative polyprotein OS=Oryza sativa GN=O... 39 0.27 tr|Q7G6D3|Q7G6D3_ORYSJ Putative polyprotein (Retrotransposon pro... 39 0.27
>tr|A7QWB9|A7QWB9_VITVI Chromosome chr6 scaffold_202, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008595001 PE=4 SV=1 Length = 150
Score = 50.4 bits (119), Expect = 9e-05 Identities = 26/97 (26%), Positives = 55/97 (56%), Gaps = 2/97 (2%) Frame = +2
Query: 332 QDTKERQPSGKLRNQPMVVMFDFGSTHNFISKEVARSIGLTNKDKGMFIIANTLFKQQEQ 511 Q + Q ++ P+ ++ D GSTHNF+ ++A+ IGL ++ +F + + E+ Sbjct: 52 QSPQTMQIHSRIGKTPLTILIDSGSTHNFLHHKIAKIIGLKSERSCLF---SMVVSNGER 108
Query: 512 VVPTK--DPLRIHIKGYLDHVDFLIGPTQGCNVMLGM 616 + + + +++ ++G VDF + P +GC+V+LG+ Sbjct: 109 LSSPRRCNEVKLSLQGIPIKVDFFLLPLEGCDVVLGV 145
>tr|A5B1A3|A5B1A3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028082 PE=4 SV=1 Length = 594
Score = 46.2 bits (108), Expect = 0.002 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%) Frame = +2
Query: 389 MFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTLFKQQEQVVPTKDPLRIHIKGYLDH 565 + D G+THNF+S+E AR + L +K+ G N+ K +V + +HI + Sbjct: 423 LVDTGATHNFVSEEKARRLELQASKEGGWLKAVNSAAKPSHEVA---CGVTMHIGSWEGR 479
Query: 566 VDFLIGPTQGCNVMLGMP*MHKVK 637 VDF + P ++LGM + KVK Sbjct: 480 VDFTVAPMDDFKMVLGMDFLQKVK 503
>tr|A7Q471|A7Q471_VITVI Chromosome chr9 scaffold_49, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029562001 PE=4 SV=1 Length = 219
Score = 45.4 bits (106), Expect = 0.003 Identities = 49/203 (24%), Positives = 84/203 (41%), Gaps = 18/203 (8%) Frame = +2
Query: 62 KHGKKPYAAYVAPKSPNFKDEVKKPKRTFKKLSKEEVEQRIKEGRYFQCGQK---GHMAW 232 K G P + P SP K + +R LS ++++R +G + C K GH Sbjct: 14 KLGSVPTRLAIGPPSPPEKRAIVPVQR----LSPSQMKERRDKGLCYNCDDKWAPGHKC- 68
Query: 233 XXXXXXXXXXXXXXXXXXXXVDTIADVQVPES-------------SQDTKERQPSGKLRN 373 D +D +VP+S S + K + G + Sbjct: 69 -----------KSARLFIMECDESSDDEVPKSEIEPGISIHALVGSPNPKTMRFLGHICG 117
Query: 374 QPMVVMFDFGSTHNFISKEVARSIGLT-NKDKGMFI-IANTLFKQQEQVVPTKDPLRIHI 547 + +V++ D GSTHNF+ V + L N +G+ + +AN + E + +H+ Sbjct: 118 RAVVILVDTGSTHNFMDPSVIQRAHLPFNPTEGLSVKVANGQAVRSEGSCAA---VSLHM 174
Query: 548 KGYLDHVDFLIGPTQGCNVMLGM 616 +G L +DF I GC+++LG+ Sbjct: 175 QGNLYTIDFYILTLGGCDIVLGV 197
>tr|A5AQF1|A5AQF1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014071 PE=4 SV=1 Length = 1217
Score = 44.3 bits (103), Expect = 0.006 Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 1/108 (0%) Frame = +2
Query: 317 VPESSQDTKERQPSGKLRNQPMVVMFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTL 493 +P++ Q + + + D G+THNF+S++ AR + L +K+ G N+ Sbjct: 125 IPKTPQSKGLMYVEAIVNGKATKALVDTGATHNFVSEDEARRLELQASKEGGWLKAVNST 184
Query: 494 FKQQEQVVPTKDPLRIHIKGYLDHVDFLIGPTQGCNVMLGMP*MHKVK 637 K V + +HI + VDF + P ++LGM + KVK Sbjct: 185 AKPSHGVA---RGVTMHIGSWEGRVDFTVAPMDDFKMVLGMDFLQKVK 229
>tr|A5B4X8|A5B4X8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020318 PE=4 SV=1 Length = 1454
Score = 43.9 bits (102), Expect = 0.008 Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 1/83 (1%) Frame = +2
Query: 389 MFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTLFKQQEQVVPTKDPLRIHIKGYLDH 565 + D G+THNF+SK+ AR + L +K+ G N+ K V + +HI + Sbjct: 366 LVDTGATHNFVSKDEARRLELQASKEGGWLKAVNSAAKPSHGVA---REVTMHIGSWEGR 422
Query: 566 VDFLIGPTQGCNVMLGMP*MHKV 634 VDF + P ++LGM + KV Sbjct: 423 VDFTVAPMDDFKMVLGMDFLQKV 445
>tr|A5BDH9|A5BDH9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001313 PE=4 SV=1 Length = 1414
Score = 42.7 bits (99), Expect = 0.018 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +2
Query: 389 MFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTLFKQQEQVVPTKDPLRIHIKGYLDH 565 + D G+THNF++++ AR + L +K+ G N+ K V + +HI + Sbjct: 450 LVDTGATHNFVAEDEARRLELQASKEGGWLKAVNSAAKPSHGVA---RGVSMHIGSWEGR 506
Query: 566 VDFLIGPTQGCNVMLGMP*MHKVK 637 VDF + P ++LGM + KVK Sbjct: 507 VDFTVAPMDDFKMVLGMDFLQKVK 530
>tr|A5BX03|A5BX03_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032357 PE=4 SV=1 Length = 1545
Score = 42.4 bits (98), Expect = 0.024 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 1/84 (1%) Frame = +2
Query: 389 MFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTLFKQQEQVVPTKDPLRIHIKGYLDH 565 + D G+THNF+S++ AR + L +K+ G N+ K V + +HI + Sbjct: 445 LVDTGATHNFVSEDEARRLELQASKEGGWLKAVNSAAKPSHGVA---RGVTMHIGLWEGR 501
Query: 566 VDFLIGPTQGCNVMLGMP*MHKVK 637 VDF + P ++LGM + KVK Sbjct: 502 VDFTVAPMDDFKMVLGMDFLQKVK 525
>tr|A5B1B2|A5B1B2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018683 PE=4 SV=1 Length = 368
Score = 42.4 bits (98), Expect = 0.024 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%) Frame = +2
Query: 317 VPESSQDTKERQPSGKLRNQPMVVMFDFGSTHNFISKEVARSIGL-TNKDKGMFIIANTL 493 +P+ Q + + + + D G+THNF+S++ AR + L +K+ G N++ Sbjct: 268 MPKMPQSKELMYVEALMNGKATKALVDTGATHNFVSEDEARMLELQASKEGGWLKAVNSV 327
Query: 494 FKQQEQVVPTKDPLRIHIKGYLDHVDFLIGPTQGCNVMLGM 616 K V + +HI + VDF++ P ++LGM Sbjct: 328 AKPSHGVA---RGVTMHIGSWEGRVDFIVAPMDDFKMVLGM 365
>tr|A5C5K2|A5C5K2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039388 PE=4 SV=1 Length = 1360
Score = 42.0 bits (97), Expect = 0.031 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Frame = +2
Query: 359 GKLRNQPMVVMFDFGSTHNFISKEV---ARSIGLTNKDKGMFIIANTLFKQQEQVVPTKD 529 GKL+N+ ++V+ D GSTHNFI + + + + K ++AN +++ + Sbjct: 368 GKLKNKNVMVLIDGGSTHNFIDQAIIVFKFGLPVIRDRKFEVMVAN---REKIECAGQCR 424
Query: 530 PLRIHIKGYLDHVDFLIGPTQGCNVMLGM 616 L + I+GY D+ I P C ++LG+ Sbjct: 425 SLTLTIQGYSVTADYYILPVAACQLVLGV 453
>tr|A5AXU2|A5AXU2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031912 PE=4 SV=1 Length = 852
Score = 41.6 bits (96), Expect = 0.041 Identities = 24/83 (28%), Positives = 43/83 (51%) Frame = +2
Query: 389 MFDFGSTHNFISKEVARSIGLTNKDKGMFIIANTLFKQQEQVVPTKDPLRIHIKGYLDHV 568 + D G+T+NF+S++ A+ + L +G ++ A + V K + +HI + V Sbjct: 228 LMDTGATYNFVSEDEAKRLELQASKEGAWLKAVNSAAKPSHGVARK--VTMHIGSWEGRV 285
Query: 569 DFLIGPTQGCNVMLGMP*MHKVK 637 DF + P ++LGM + KVK Sbjct: 286 DFTVAPMDDFKMVLGMDFLQKVK 308
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