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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950890
Clone id TST38A01NGRL0009_O15
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_O15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
AACGACCCCATTGGACCAACTTTGAACTAAGGGAGGAGTGAGGAAAGCGCCATGGCCGAC
GCTCCCGGCAGCCATTGCTGCTCGTGCAGTGAAAGGAGGGGCGTTTCCTTTAAGGACTCG
GCAGTGTCGTCACCGCGGATCGCCACAGAAGAGGAGGAAGCTTGGCTCCAATGGGAGGAC
CAGATTCTGCAAGCCATGGTCGTTCCTGCTTCGCCCTCACCAAGCCGTGATGCAGAGGTT
TTCAATGTTCAAGATGAGCTAGCACAGTGGACTCAAGCAGAAGTTCAGACCCATGCCATA
GAAGAAGCTGAGCTTATATGTGGATTAGAAGAACAAAAGGAGCAGCAGCTTTTAGAGCTT
GCAAATTTTTTTAATGCCCCCCACTACCTGCTGATGAAATCTCTTGATAAAGGGGGGGGG
GTATCTCACCGATGCTAAGCATTAGAGGAGGCAGACATTCAAGATCTTATTTTTGTCCAA
CAATCAGCTAAAGCACTTCTACAACTTGTCGATGACAACATGCATGCAAGGCTGGAGGAA
GAACGTCTCAAGGCTCTTGATCAATATAACAAGGCATTGGTCTCACACAAAGAGATTGAA
GCTACTGCTGCAAGGGAAAAAGCTCTTCTCAAGGCAGAAATTTCTAAGC
■■Homology search results ■■ -
sp_hit_id Q3SZY3
Definition sp|Q3SZY3|PTTG1_BOVIN Securin OS=Bos taurus
Align length 32
Score (bit) 30.8
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950890|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_O15, 5'
         (649 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3SZY3|PTTG1_BOVIN Securin OS=Bos taurus GN=PTTG1 PE=2 SV=1         31   6.4  
sp|Q9IAL9|ESR22_CARAU Estrogen receptor beta-2 OS=Carassius aura...    31   6.4  
sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 P...    30   8.4  
sp|P39067|ACUC_BACSU Acetoin utilization protein acuC OS=Bacillu...    30   8.4  

>sp|Q3SZY3|PTTG1_BOVIN Securin OS=Bos taurus GN=PTTG1 PE=2 SV=1
          Length = 202

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 211 KQERPWLAESGPPIGAKLPPLLWRSAVTTLPS 116
           ++E   L   GPP   K+PPLLW S +   PS
Sbjct: 152 ERELEQLLHVGPPSPLKMPPLLWESNLLQSPS 183


>sp|Q9IAL9|ESR22_CARAU Estrogen receptor beta-2 OS=Carassius auratus
           GN=esr2b PE=2 SV=1
          Length = 610

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = -1

Query: 199 PWLAESGPPIGAKLPPLLWRSAVTTLPSP*RKRPSFHCTSSNGCRE 62
           P L  + PP+   L PL   SA+   P P    PS HC S    RE
Sbjct: 76  PVLGYTHPPVSESLVPL--NSAIFWPPHPTHSTPSLHCPSPLAYRE 119


>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3
            SV=2
          Length = 1568

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +1

Query: 523  HARLEEERLKALDQYN---KALVSHKEIEATAAREKALLKAEISK 648
            H  L+EE  K LD+ +   KALV H+ +      E   LK EIS+
Sbjct: 1037 HNELKEESRKQLDELDETKKALVEHQTLNGDLQNEVKSLKEEISR 1081


>sp|P39067|ACUC_BACSU Acetoin utilization protein acuC OS=Bacillus
           subtilis GN=acuC PE=3 SV=1
          Length = 387

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +1

Query: 106 SFKDSAVSSPRIATEEEEAWLQWEDQILQAMVVPASPSPSRDAEVFNVQDE 258
           +F D  + +PR+A+EEE + +  +D I    +  A   P+ + E + +  E
Sbjct: 40  AFDDGDIVTPRLASEEELSLVHTDDYIQAVKLAGAGKLPAEEGESYGLGTE 90
tr_hit_id Q221T8
Definition tr|Q221T8|Q221T8_RHOFD DsrE-like protein OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
Align length 38
Score (bit) 37.0
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950890|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_O15, 5'
         (649 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q221T8|Q221T8_RHOFD DsrE-like protein OS=Rhodoferax ferriredu...    37   1.0  
tr|B5ZBW9|B5ZBW9_UREU1 DNA topoisomerase IV, B subunit OS=Ureapl...    35   4.0  
tr|B5BNJ7|B5BNJ7_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    35   4.0  
tr|B3XUD3|B3XUD3_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    35   4.0  
tr|B1RYB5|B1RYB5_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    35   4.0  
tr|Q9PQ24|Q9PQ24_UREPA Topoisomerase IV subunit B OS=Ureaplasma ...    34   8.8  
tr|B1AJA7|B1AJA7_UREP2 DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|Q4J1X1|Q4J1X1_AZOVI Ferripyoverdine receptor OS=Azotobacter v...    34   8.8  
tr|B2NFS9|B2NFS9_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|B2NDT4|B2NDT4_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|B2DB48|B2DB48_UREUR DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|B2D8L2|B2D8L2_UREPA DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|B1RVE9|B1RVE9_UREPA DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|B1RU22|B1RU22_UREPA DNA topoisomerase IV, B subunit OS=Ureapl...    34   8.8  
tr|A8ULR7|A8ULR7_9FLAO Putative uncharacterized protein OS=Flavo...    34   8.8  

>tr|Q221T8|Q221T8_RHOFD DsrE-like protein OS=Rhodoferax
           ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118)
           GN=Rfer_0463 PE=4 SV=1
          Length = 117

 Score = 37.0 bits (84), Expect = 1.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 76  CCSCSERRGVSFKDSAVSSPRIATEEEEAWLQWEDQIL 189
           C SC + RG+S  D    + R + +E  AW QW D++L
Sbjct: 78  CGSCIDARGISETDLVKGASRSSMDELAAWTQWSDKVL 115


>tr|B5ZBW9|B5ZBW9_UREU1 DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699
           / Western) GN=parE PE=4 SV=1
          Length = 642

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+V+   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREE 391


>tr|B5BNJ7|B5BNJ7_UREUR DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 4 str. ATCC 27816
           GN=parE PE=4 SV=1
          Length = 642

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+V+   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREE 391


>tr|B3XUD3|B3XUD3_UREUR DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 12 str. ATCC 33696
           GN=parE PE=4 SV=1
          Length = 642

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+V+   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREE 391


>tr|B1RYB5|B1RYB5_UREUR DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 13 str. ATCC 33698
           GN=parE PE=4 SV=1
          Length = 642

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+V+   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAIVARDAKLAAKRAREE 391


>tr|Q9PQ24|Q9PQ24_UREPA Topoisomerase IV subunit B OS=Ureaplasma
           parvum GN=parE/gyrB PE=3 SV=1
          Length = 642

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+++   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREE 391


>tr|B1AJA7|B1AJA7_UREP2 DNA topoisomerase IV, B subunit
           OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 /
           NCTC 11736) GN=parE PE=3 SV=1
          Length = 642

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+++   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREE 391


>tr|Q4J1X1|Q4J1X1_AZOVI Ferripyoverdine receptor OS=Azotobacter
           vinelandii DJ GN=AvinDRAFT_7272 PE=3 SV=1
          Length = 537

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -1

Query: 172 IGAKLPPLLWRSAVTTLPSP*RKRPSFHCTSSNGCRERRPWRFPHSSLSSKLVQWGR 2
           +GA+  PLL  SA+  + +   + PS          ++R W  P  SLS+ LV W +
Sbjct: 14  LGARFRPLLLASAIGCVLA---EIPSVQAQQETTAEQQRNWNIPAQSLSAALVSWSQ 67


>tr|B2NFS9|B2NFS9_UREUR DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 11 str. ATCC 33695
           GN=parE PE=4 SV=1
          Length = 642

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+++   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREE 391


>tr|B2NDT4|B2NDT4_UREUR DNA topoisomerase IV, B subunit
           OS=Ureaplasma urealyticum serovar 7 str. ATCC 27819
           GN=parE PE=4 SV=1
          Length = 642

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 17/59 (28%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +1

Query: 448 EADIQDLIFVQQSAKALLQLVDDNMHARLEEERLKALDQYNKALVSH-KEIEATAAREK 621
           E   ++ +F  ++ +A+ + ++DN    LEE + +ALD  N+A+++   ++ A  ARE+
Sbjct: 333 EGQTKNKLFTPEANEAVKKTIEDNFSFWLEENKTQALDLVNRAILARDAKLAAKRAREE 391