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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950893
Clone id TST38A01NGRL0009_O18
Library
Length 665
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_O18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATCAGGAGCGAAGCTGATGAAGCCAAGGCTGCCAAAGAGCAAGCAGAAAGCATTTTACAA
ACTGCTTTGCAGGAAGCTCAAGCAGCTAAGGAGGCTGAAGCTGCTGCGGTCATTCGTGTC
AAGGCCTTATCCATGAAAACTTATGCTTCAAGAGCATCAGAGGTTGAACCAGGTGCTGAG
ATTGCCATATCTAAGGATGAATACGATGCTTTGAAGCGGAAAGTGCAGGAGGCTGAGGAG
CTTGCAAACATGAGGGTGGCTGCAGCTATGGCCCAAGTGGAGGCAGTAAGAGCCAGTGAG
CAGGAGATTCTTCATAAGGTGACCATTGCAAGTGAAGACATGGAGAGCATCAAGAGCGCT
ATAAAGCAGGCATTGCAGCGAGCCGAAATGGCTGAAGCAGCCAAATCGGCTGTTGAGAAT
GAAATGAAGAGATTGAGGGAGAGGGAACAAAAGCGAAAGGAGACACCTACAGCCTCTCAG
CAGCTTTATGTCAGGAGTGTGAATGATGGTGGACAATCTGTAACGGTTTCGAAATTGCCA
GAGCCTATAAGAAATGCGGCTAGTTTGCTTGCAGAAGAGGGTTTAAAACCACATAACAAG
GCAGATAACTTGAAGAAAAAGCCCCTGCTTGGCTCACTAGGATCCTATTTATCGAAGAGG
AGTAG
■■Homology search results ■■ -
sp_hit_id Q9FF41
Definition sp|Q9FF41|PMI15_ARATH Protein PLASTID MOVEMENT IMPAIRED 15 OS=Arabidopsis thaliana
Align length 101
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950893|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_O18, 5'
         (665 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FF41|PMI15_ARATH Protein PLASTID MOVEMENT IMPAIRED 15 OS=Ar...    33   1.4  
sp|P26043|RADI_MOUSE Radixin OS=Mus musculus GN=Rdx PE=1 SV=2          32   2.3  
sp|P04266|K2C1_XENLA Keratin, type II cytoskeletal I (Fragment) ...    31   6.7  

>sp|Q9FF41|PMI15_ARATH Protein PLASTID MOVEMENT IMPAIRED 15
           OS=Arabidopsis thaliana GN=PMI15 PE=2 SV=2
          Length = 574

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 25/101 (24%), Positives = 42/101 (41%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++++L      SR  E E  + I IS+ EY+ L +   +AEE A                
Sbjct: 411 KLESLVEDMMESREMESEHCSTITISRFEYEYLSKHASQAEETAEKKVAAAAAWVEALKA 470

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           S +  L K      + E  K+  ++ + R E + + K  VE
Sbjct: 471 STKSFLMKTETLMRESEMTKAEEEREVFRMERSLSTKRLVE 511


>sp|P26043|RADI_MOUSE Radixin OS=Mus musculus GN=Rdx PE=1 SV=2
          Length = 583

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 12/97 (12%)
 Frame = +1

Query: 121 KALSMKTYASRASE----------VEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXX 270
           KAL ++    RA E              A+ AI+K   D +K + Q AEELA        
Sbjct: 371 KALELEQERQRAKEEAERLDRERRAAEEAKSAIAKQAADQMKNQEQLAEELAEFTAKIAL 430

Query: 271 XXXXXXXXSEQ--EILHKVTIASEDMESIKSAIKQAL 375
                    E+  E  HK   A ED+E  K  +K  +
Sbjct: 431 LEEAKKKKEEEATEWQHKAFAAQEDLEKTKEELKTVM 467


>sp|P04266|K2C1_XENLA Keratin, type II cytoskeletal I (Fragment)
           OS=Xenopus laevis PE=2 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 15/29 (51%), Positives = 15/29 (51%)
 Frame = +3

Query: 207 CFEAESAGG*GACKHEGGCSYGPSGGSKS 293
           CF A   G  G   H GG SYG SGG  S
Sbjct: 383 CFGAGGMGYEGGSMHGGGSSYGHSGGKTS 411
tr_hit_id A3B1G7
Definition tr|A3B1G7|A3B1G7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica
Align length 101
Score (bit) 81.3
E-value 5.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950893|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_O18, 5'
         (665 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A3B1G7|A3B1G7_ORYSJ Putative uncharacterized protein OS=Oryza...    81   5e-14
tr|Q2QU66|Q2QU66_ORYSJ Os12g0271600 protein OS=Oryza sativa subs...    81   7e-14
tr|B8AZL7|B8AZL7_ORYSI Putative uncharacterized protein OS=Oryza...    81   7e-14
tr|A2Y1Y6|A2Y1Y6_ORYSI Putative uncharacterized protein OS=Oryza...    81   7e-14
tr|A5C0E0|A5C0E0_VITVI Putative uncharacterized protein OS=Vitis...    76   2e-12
tr|A7Q9A6|A7Q9A6_VITVI Chromosome chr19 scaffold_66, whole genom...    75   3e-12
tr|Q5K5B1|Q5K5B1_ORYSA Myosin heavy chain-like protein (Fragment...    68   6e-10
tr|A9U0I4|A9U0I4_PHYPA Predicted protein OS=Physcomitrella paten...    62   4e-08
tr|A9SKH3|A9SKH3_PHYPA Predicted protein OS=Physcomitrella paten...    59   3e-07
tr|Q9LVQ4|Q9LVQ4_ARATH Myosin heavy chain-like OS=Arabidopsis th...    58   6e-07
tr|Q5XUZ0|Q5XUZ0_ARATH Putative uncharacterized protein OS=Arabi...    58   6e-07
tr|Q4PSB2|Q4PSB2_ARATH Putative uncharacterized protein OS=Arabi...    58   6e-07
tr|A7R023|A7R023_VITVI Chromosome undetermined scaffold_296, who...    57   1e-06
tr|Q0WQC5|Q0WQC5_ARATH Putative uncharacterized protein At2g2657...    55   5e-06
tr|O48724|O48724_ARATH Putative uncharacterized protein At2g2657...    55   5e-06
tr|Q9SZB6|Q9SZB6_ARATH Putative uncharacterized protein F17M5.15...    45   0.003
tr|O80914|O80914_ARATH Putative uncharacterized protein At2g3837...    45   0.003
tr|B8B8L6|B8B8L6_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.003
tr|Q94LH1|Q94LH1_ORYSJ Os03g0395300 protein OS=Oryza sativa subs...    45   0.005
tr|A2XHM1|A2XHM1_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.005
tr|A7NTV4|A7NTV4_VITVI Chromosome chr18 scaffold_1, whole genome...    44   0.007
tr|Q8LHQ6|Q8LHQ6_ORYSJ Os07g0619100 protein OS=Oryza sativa subs...    44   0.009
tr|A3BM89|A3BM89_ORYSJ Putative uncharacterized protein OS=Oryza...    44   0.009
tr|Q2HV31|Q2HV31_MEDTR Prefoldin OS=Medicago truncatula GN=MtrDR...    43   0.015
tr|B6U0R6|B6U0R6_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.026
tr|B4FWZ3|B4FWZ3_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.034
tr|B4FLN2|B4FLN2_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.034
tr|A5C9E2|A5C9E2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.045
tr|Q10LQ3|Q10LQ3_ORYSJ Os03g0339700 protein OS=Oryza sativa subs...    41   0.076
tr|A9P7W0|A9P7W0_POPTR Putative uncharacterized protein OS=Popul...    41   0.076

>tr|A3B1G7|A3B1G7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016889 PE=4 SV=1
          Length = 713

 Score = 81.3 bits (199), Expect = 5e-14
 Identities = 44/101 (43%), Positives = 66/101 (65%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K LS +  A+RAS  E GA+I ISK+E+++L RKV+E+E+L+                
Sbjct: 523 QIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEAFRA 582

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SE E + K+  A ++ME ++ A ++AL+RAEMAEAAK AVE
Sbjct: 583 SENEAIRKLEAARKEMEDMELATEEALKRAEMAEAAKRAVE 623


>tr|Q2QU66|Q2QU66_ORYSJ Os12g0271600 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0271600 PE=2 SV=1
          Length = 647

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 44/101 (43%), Positives = 66/101 (65%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K LS +  A+RAS  E GA+I ISK+E+++L RKV+E+E+L+                
Sbjct: 457 QIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEAVRA 516

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SE E + K+  A ++ME ++ A ++AL+RAEMAEAAK AVE
Sbjct: 517 SENEAIKKLEAARKEMEDMELATEEALKRAEMAEAAKRAVE 557


>tr|B8AZL7|B8AZL7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19014 PE=4 SV=1
          Length = 722

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 44/101 (43%), Positives = 66/101 (65%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K LS +  A+RAS  E GA+I ISK+E+++L RKV+E+E+L+                
Sbjct: 532 QIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEAVRA 591

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SE E + K+  A ++ME ++ A ++AL+RAEMAEAAK AVE
Sbjct: 592 SENEAIKKLEAARKEMEDMELATEEALKRAEMAEAAKRAVE 632


>tr|A2Y1Y6|A2Y1Y6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19019 PE=4 SV=1
          Length = 208

 Score = 80.9 bits (198), Expect = 7e-14
 Identities = 44/101 (43%), Positives = 66/101 (65%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K LS +  A+RAS  E GA+I ISK+E+++L RKV+E+E+L+                
Sbjct: 66  QIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEAVRA 125

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SE E + K+  A ++ME ++ A ++AL+RAEMAEAAK AVE
Sbjct: 126 SENEAIKKLEAARKEMEDMELATEEALKRAEMAEAAKRAVE 166


>tr|A5C0E0|A5C0E0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000013 PE=4 SV=1
          Length = 650

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 42/101 (41%), Positives = 63/101 (62%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K L+ +T A+RAS  E GA I IS +E++AL RKV+E++ LA                
Sbjct: 455 QIKILAERTNAARASTSESGANITISTEEFEALSRKVEESDTLAEMKVAAAMAQVEAVKA 514

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SEQE + ++    +++E +K+A + AL+RAE AEAAK AVE
Sbjct: 515 SEQEAVKRLEATQKEIEEMKAATEAALKRAETAEAAKRAVE 555


>tr|A7Q9A6|A7Q9A6_VITVI Chromosome chr19 scaffold_66, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00033399001
           PE=4 SV=1
          Length = 650

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 42/101 (41%), Positives = 62/101 (61%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K L+ +T A+RAS  E GA I IS +E+ AL RKV+E++ LA                
Sbjct: 455 QIKILAERTNAARASTSESGANITISTEEFKALSRKVEESDTLAEMKVAAAMAQVEAVKA 514

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
           SEQE + ++    +++E +K+A + AL+RAE AEAAK AVE
Sbjct: 515 SEQEAIKRLEATQKEIEEMKAATEAALKRAETAEAAKRAVE 555


>tr|Q5K5B1|Q5K5B1_ORYSA Myosin heavy chain-like protein (Fragment)
           OS=Oryza sativa GN=myo1 PE=2 SV=1
          Length = 179

 Score = 67.8 bits (164), Expect = 6e-10
 Identities = 36/92 (39%), Positives = 58/92 (63%)
 Frame = +1

Query: 115 RVKALSMKTYASRASEVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXX 294
           ++K LS +  A+RAS  E GA+I ISK+E+++L RKV+E+E+L+                
Sbjct: 88  QIKQLSERASAARASTSESGAKITISKEEFESLSRKVEESEKLSEMKVAAAMAQVEAVRA 147

Query: 295 SEQEILHKVTIASEDMESIKSAIKQALQRAEM 390
           SE E + K+  A ++ME ++ A ++AL+RAEM
Sbjct: 148 SENEAIKKLEAARKEMEDMELATEEALKRAEM 179


>tr|A9U0I4|A9U0I4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_99902 PE=4 SV=1
          Length = 1156

 Score = 61.6 bits (148), Expect = 4e-08
 Identities = 33/86 (38%), Positives = 51/86 (59%)
 Frame = +1

Query: 160  EVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXXSEQEILHKVTIASED 339
            E E GAE+ I  +EY ALK   +E EELAN               SE+E+  K+ +A +D
Sbjct: 957  ESESGAEVTIPSEEYQALKTSAKEVEELANKRVALSMAQVEAAKASEKEMQSKLEMAKKD 1016

Query: 340  MESIKSAIKQALQRAEMAEAAKSAVE 417
            +E+ ++ + +A+++ + AEAAK AVE
Sbjct: 1017 IEASRAELIEAMKKRDEAEAAKFAVE 1042


>tr|A9SKH3|A9SKH3_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_80634 PE=4 SV=1
          Length = 1151

 Score = 58.9 bits (141), Expect = 3e-07
 Identities = 31/86 (36%), Positives = 51/86 (59%)
 Frame = +1

Query: 160  EVEPGAEIAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXXXXSEQEILHKVTIASED 339
            + E  A++ IS +EY +LK K Q+ EELA                SE+E+  K+ I+ +D
Sbjct: 952  DTESKADVTISHEEYQSLKSKAQDVEELAKKRVALAMAQVEAAKASEKEMQSKLEISRKD 1011

Query: 340  MESIKSAIKQALQRAEMAEAAKSAVE 417
            +++I+  +++A ++ E AEAAK AVE
Sbjct: 1012 IDAIRVELREATRKREEAEAAKFAVE 1037


>tr|Q9LVQ4|Q9LVQ4_ARATH Myosin heavy chain-like OS=Arabidopsis
           thaliana GN=At5g55860 PE=4 SV=1
          Length = 649

 Score = 57.8 bits (138), Expect = 6e-07
 Identities = 34/103 (33%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
 Frame = +1

Query: 115 RVKALSMKTYASRAS-EVEPGAE-IAISKDEYDALKRKVQEAEELANXXXXXXXXXXXXX 288
           ++K++S KT A+R S   E G++ I +S++E+ +L ++ +  ++LA              
Sbjct: 454 QIKSMSEKTNAARNSTSSESGSQSITLSQEEFKSLSKRAEVFDKLAEMKVAAALAQVEAV 513

Query: 289 XXSEQEILHKVTIASEDMESIKSAIKQALQRAEMAEAAKSAVE 417
             SE E L K+    E+++ +K+A ++AL++A MA+AAK AVE
Sbjct: 514 RASENETLKKLETTQEEIKKLKTATEEALKKAAMADAAKKAVE 556