DK950910
Clone id TST38A01NGRL0009_P13
Library
Length 678
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_P13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CGCCATCTCCGTTTTTGGTTTGGTGAAACTGCTGTTGGCCATGTCTGTTTCTTTGCGTGG
ACTATCCTACACTCATGGAGGTTCTTCAGTAAACTTCTCCTCGACATCTGTATGCGGCTG
TTCATGCGCGAGATTCTGCAAACTTCCCCTGTTTTAGCCATGGCACTGCTCCATTCATTT
CGAGAGGCAGGCCATATGCGGCCTGCTTACACATTCAAATTGACTAGCCTATCACCCATG
AATAGGCAGCTCCATTCTCCTTATCTTCACAAATTCAACAGCTTTGCACTTCAAGTTAGA
CCCTCGTGGTGCCGCGTCACCTCTTCGTCGTCTTCCTCGTCTGCCTTGGAAGCTTTTCAA
AGGCTGTGGGAGGCAAGGGTTTCTCCATCCCTGCATGCAATGGCGTCCCTTGCAGTGAGC
CTCTCACATCTACTTTCAGCTCTAGCTGTCTTCTTACATCAGAAGACAATGAAAGCAAAG
GCTAGCAGTTCCTCACTTTGTCAGCTATATGATCATGATGTCAACTCCTTGTTGGCAGAA
AGCAATAGCAGTTTATTGAGGCGGAGGCTCTCTGGCTGCTTTATGGAGCAGGGCGGGCTT
GCTATGGCATTAATGAGCACTACGGCAATCGCAAAGGACCATATAAACCCTGTCATAGCG
ACATTGTGTGCGAATCCC
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950910|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P13, 5'
(678 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A9SDU9
Definition tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 35
Score (bit) 45.1
E-value 0.004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950910|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P13, 5'
(678 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.004
tr|A9SE32|A9SE32_PHYPA Predicted protein (Fragment) OS=Physcomit... 39 0.31
tr|Q9M361|Q9M361_ARATH Putative uncharacterized protein F15G16.1... 39 0.40
tr|Q8RXV2|Q8RXV2_ARATH Putative uncharacterized protein At3g6177... 39 0.40

>tr|A9SDU9|A9SDU9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_127948 PE=4 SV=1
Length = 215

Score = 45.1 bits (105), Expect = 0.004
Identities = 20/35 (57%), Positives = 27/35 (77%)
Frame = +1

Query: 574 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANP 678
G ++QG L MAL+ST+ IA+D I+PV+ TL ANP
Sbjct: 39 GALLQQGSLGMALLSTSMIARDRISPVLITLRANP 73


>tr|A9SE32|A9SE32_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_128229 PE=4 SV=1
Length = 181

Score = 38.9 bits (89), Expect = 0.31
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1

Query: 574 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANP 678
G + QG + MAL+S + IA+D I+PV+ TL NP
Sbjct: 5 GALLMQGSMGMALLSISMIARDRISPVLITLRTNP 39


>tr|Q9M361|Q9M361_ARATH Putative uncharacterized protein F15G16.160
OS=Arabidopsis thaliana GN=F15G16.160 PE=4 SV=1
Length = 197

Score = 38.5 bits (88), Expect = 0.40
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1

Query: 574 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANP 678
G GGL +AL+S TA AK I+P +ATL ANP
Sbjct: 20 GDLKHNGGLGIALLSVTASAKIKISPFVATLSANP 54


>tr|Q8RXV2|Q8RXV2_ARATH Putative uncharacterized protein At3g61770
(Putative uncharacterized protein) OS=Arabidopsis
thaliana GN=At3g61770 PE=2 SV=1
Length = 284

Score = 38.5 bits (88), Expect = 0.40
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = +1

Query: 574 GCFMEQGGLAMALMSTTAIAKDHINPVIATLCANP 678
G GGL +AL+S TA AK I+P +ATL ANP
Sbjct: 107 GDLKHNGGLGIALLSVTASAKIKISPFVATLSANP 141