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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950911
Clone id TST38A01NGRL0009_P14
Library
Length 603
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_P14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
ATGGCTCTGGCTGAAGTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGTGATCCG
GTTCGGACTATGGGTGGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCCGACGAC
AAGAATGGGGATGCTACTCAGTTTAAAAGATTAGATGGAGCAGCTGAAGCGGCCAATGCT
GGCTATAGTATACCTGTCTTGGCAAGCTATGATGGAGGTGTGGGATGTGATACAAGACAC
GTATTCTCTGGCATGCTTGCTGAGAATGGGCAGTCTATGTACTATGCCCCTGGTTATGAG
TTTCCACAGCAATCTCCTTATTGCTCACAGCCTCAAGGGGCTTACATGTCAAATATGGGA
TCTGGAACAACGGGGTACTGTGGACCGCAGTATGGGCCTTATTATCAGCAGGTGCCACCT
GGGCTTATGCAGTATTACCCTGCAGAGCAAGAAGTGACGAAGGCTGGAGCCAAGAAGCTG
AATGTAAAGGATTGTACCCAAAATGCTAAGGCCAAACCTGGAGTGCCAGGAAAGCCAGGC
TATCAGGCTGGACACAAAAGCATACTGCCTGATGCTTCTAATCATTGGNGGACTTTACCC
AGC
■■Homology search results ■■ -
sp_hit_id Q9W4E2
Definition sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster
Align length 115
Score (bit) 33.9
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950911|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P14, 5'
         (603 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=...    34   0.65 
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs...    31   4.2  
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1...    31   5.5  
sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC OS...    30   7.2  
sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sf...    30   7.2  
sp|P06175|FLIC_SALRU Flagellin OS=Salmonella rubislaw GN=fliC PE...    30   7.3  
sp|P18292|THRB_RAT Prothrombin OS=Rattus norvegicus GN=F2 PE=1 SV=1    30   9.4  
sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS OS=Fusobac...    30   9.5  
sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor OS=Strong...    30   9.5  

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg
            PE=1 SV=2
          Length = 3584

 Score = 33.9 bits (76), Expect = 0.65
 Identities = 34/115 (29%), Positives = 45/115 (39%)
 Frame = -3

Query: 388  AVHSTPLFQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHH 209
            A HST        T +P  + S   +A ++  Q H     H QQ  Q+ +     PH H 
Sbjct: 2071 ATHSTSSSASSTATSQPASSSSLSSLASQSQQQSHR--QLHKQQQQQQQQQQQQQPHYH- 2127

Query: 208  SLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYG 44
              P Q +Y          LI   + HP     KH  E G    +HP S P H +G
Sbjct: 2128 --PHQPHYG---------LINGHQQHP-QLNGKHYAENGSTAGYHPHSHP-HPHG 2169


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
            japonica GN=FH12 PE=3 SV=3
          Length = 1669

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 79   HHP*SEPDHLYGEPSQAPRPPLQPEP 2
            HHP   P +L GE   AP PP  P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
           OS=Homo sapiens GN=HRCT1 PE=2 SV=1
          Length = 115

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 196 QVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 47
           +V  +Q WP +    +     H H     HVP VG   +HHP   P HL+
Sbjct: 52  RVRRAQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC
           OS=Bacillus subtilis GN=feuC PE=1 SV=2
          Length = 394

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 360 IWNNGVLWTAVWALLSAGATWAYAVLP 440
           +W NG +W+A W  ++A   W    +P
Sbjct: 182 VWKNGSIWSANWTYITAVLPWMLLFIP 208


>sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sfuB
           OS=Serratia marcescens GN=fbpB PE=3 SV=2
          Length = 527

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +3

Query: 306 TAISL---LLTASRGLHVK-YGIWNNGVLWTAVWALLSAGATWAYAVLPC 443
           TA++L    +T +R L +  + +W N  LW A+W  LS  A  A  +  C
Sbjct: 295 TALALGVPFITLARWLWLGGFEVWRNAELWPALWQTLSLSAAGALLITLC 344


>sp|P06175|FLIC_SALRU Flagellin OS=Salmonella rubislaw GN=fliC PE=3
           SV=2
          Length = 493

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 1/93 (1%)
 Frame = +1

Query: 13  EVVAAAPDSAHHTGDPVRTMGGGFKGDLPQE-HVSDDKNGDATQFKRLDGAAEAANAGYS 189
           EV  AA      TG P   +  GF     ++   +  +N D T+ K    AA  A AG+ 
Sbjct: 244 EVTVAADGKVTLTGTPTGPITAGFPSTATKDVKQTQQENADLTEAKAALTAAGVAAAGHR 303

Query: 190 IPVLASYDGGVGCDTRHVFSGMLAENGQSMYYA 288
             V  SY    G   + +  G+  + G   Y A
Sbjct: 304 SVVKMSYTDNNG---KTIDGGLAVKVGDDYYSA 333


>sp|P18292|THRB_RAT Prothrombin OS=Rattus norvegicus GN=F2 PE=1 SV=1
          Length = 617

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 278 CTMPLVMSFHSNLLIAHSLKGLTCQIW 358
           C M L +++H N+ + H+  G+ CQ+W
Sbjct: 109 CAMDLGLNYHGNVSVTHT--GIECQLW 133


>sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS
           OS=Fusobacterium nucleatum subsp. nucleatum GN=mutS PE=3
           SV=1
          Length = 896

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -1

Query: 321 IRRLLWKLITRGIVHRLPILSKHAREYVSCITSHTSIIACQDRYTIASIGRFS 163
           ++R + ++IT G +  +  L K+   Y++CI  +T+       YT  + G FS
Sbjct: 119 VKREVTRVITPGTIIDVDFLDKNNNNYIACIKINTTENIVAIAYTDITTGEFS 171


>sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor
           OS=Strongylocentrotus purpuratus GN=FGFR PE=2 SV=1
          Length = 972

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +1

Query: 85  KGDLPQEHVSDDKNGDA---TQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGM 255
           K D PQ+  +     +A   T  K L G  +    GY +      + G GC+ + +  G 
Sbjct: 54  KPDAPQDLTAIPVKAEAIVLTWKKPLKGQTD----GYIVVYCLKRNKGNGCERQKIEGGN 109

Query: 256 LAENGQSMYYAPG-YEFPQQSPYCSQPQGA 342
           + E   +  YA   Y+F  QS Y   P+GA
Sbjct: 110 VTEVEVTNLYANHTYQFQVQSWYSDHPKGA 139
tr_hit_id B4N2C7
Definition tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni
Align length 115
Score (bit) 38.5
E-value 0.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950911|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P14, 5'
         (603 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161...    39   0.30 
tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Soran...    36   1.5  
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ...    36   2.0  
tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125...    36   2.0  
tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper...    35   2.6  
tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment...    35   3.4  
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060...    35   3.4  
tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricor...    35   4.4  
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204...    35   4.4  
tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas r...    35   4.4  
tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205...    34   5.7  
tr|Q7Q6Z2|Q7Q6Z2_ANOGA AGAP005595-PA OS=Anopheles gambiae GN=AGA...    34   5.8  
tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeob...    34   7.5  
tr|B7S0S4|B7S0S4_9GAMM Putative exonuclease, RdgC superfamily OS...    34   7.5  
tr|Q0KHV9|Q0KHV9_DROME Rugose, isoform C OS=Drosophila melanogas...    34   7.5  
tr|B7Z0X3|B7Z0X3_DROME Rugose, isoform D OS=Drosophila melanogas...    34   7.5  
tr|B7Z0W8|B7Z0W8_DROME Rugose, isoform F OS=Drosophila melanogas...    34   7.5  
tr|Q4N672|Q4N672_THEPA Putative uncharacterized protein OS=Theil...    34   7.6  
tr|Q17LV8|Q17LV8_AEDAE Myelin transcription factor 1, myt1 OS=Ae...    33   9.9  
tr|A7S4H3|A7S4H3_NEMVE Predicted protein OS=Nematostella vectens...    33   9.9  

>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142
           PE=4 SV=1
          Length = 809

 Score = 38.5 bits (88), Expect = 0.30
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
 Frame = -3

Query: 325 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 161
           +N  + V+ H Q H+T   H   A       +H+ H HH+      P   ++  H    +
Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228

Query: 160 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEP 2
            H +       HPH+    HVP VG   +    + P      P   P P L P+P
Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP-----APPTLPPPTLMPQP 278


>tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein
           OS=Sorangium cellulosum (strain So ce56) GN=sce3477 PE=4
           SV=1
          Length = 486

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 36/127 (28%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
 Frame = +1

Query: 10  AEVVAAAPDSAHHTGDPVRTMGGGFKG--DLP------QEHVSDDKNGDATQFKRLDGAA 165
           + VV   P   H   DP R       G  D P       EHV D   G         GA 
Sbjct: 27  SSVVFPEPSPQHAPVDPPRDEEAADVGSPDRPVARSGTAEHVVDVPAGGGADVPNSGGAD 86

Query: 166 EAANAGYSIPVLASYDGGVGCDTRHVFSGMLAENGQSMYYAPGYEFPQQSPYCSQPQGAY 345
             A  G  +P      GGVG      F G    +G   Y  PG  +P +S       G Y
Sbjct: 87  VPAGGGADVP----NGGGVGDRCAGPFPGEEPRDGSGYYLKPGLLYPAES------SGVY 136

Query: 346 MSNMGSG 366
           M  +  G
Sbjct: 137 MGQLSLG 143


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
           PE=4 SV=1
          Length = 793

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 23/75 (30%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = -3

Query: 217 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 38
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHP 269

Query: 37  ---SQAPRPPLQPEP 2
                AP  P+ P P
Sbjct: 270 PPHQYAPMRPMAPRP 284


>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500
           PE=4 SV=1
          Length = 788

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
 Frame = -3

Query: 469 LQPSSLLALQGNTA*AQVAPADNKAHT------------AVHSTPL--FQIPYLTCKPLE 332
           + P + L L G+   A     DN A T            A+  T L  F  P L+  P+E
Sbjct: 251 IDPENALMLSGS---AVANGGDNAAATQQQQLLPQVKMEAIDETLLETFSTPMLS--PME 305

Query: 331 AVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVYYSQHWPLQLLHL 152
             + K+   +     H     H QQ  Q  +  YH    H     Q +Y QH+  Q  HL
Sbjct: 306 IKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQHYQQHYQQQQQHL 365


>tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein
           OS=Aspergillus clavatus GN=ACLA_021280 PE=4 SV=1
          Length = 122

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 268 GQSMYYAPGYEFPQQSPYCSQPQ-GAYMSNMGSGTT 372
           GQ MYY P   +PQQ PY  Q Q G Y    G G++
Sbjct: 65  GQPMYYPPPQGYPQQQPYPPQQQPGYYADERGGGSS 100


>tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment)
           OS=planctomycete Zi62 GN=psrC PE=4 SV=1
          Length = 308

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 30/106 (28%), Positives = 41/106 (38%), Gaps = 4/106 (3%)
 Frame = +2

Query: 5   LWLKWWPRRLTRLTIQVIRFGLWVVVSKGTYLRNMFPTTRMGMLLSLKD*MEQLKRPMLA 184
           L L  WP+  + L        LW V +  TY          GM+  L    ++ K P+L 
Sbjct: 72  LQLSMWPQFRSPL--------LWDVFAVSTYATVSVIFWYTGMIPDLATLRDRTKNPILR 123

Query: 185 IVY----LSWQAMMEVWDVIQDTYSLACLLRMGSLCTMPLVMSFHS 310
           IVY    L W      W   +  Y+L   L        PLV+S H+
Sbjct: 124 IVYSVLSLGWTGSARKWSRYEKAYTLFAAL------AAPLVLSVHT 163


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
           PE=4 SV=1
          Length = 793

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 3/75 (4%)
 Frame = -3

Query: 217 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 38
           L H  P    Y ++ P    H     E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPVDPYDRYGPPLHPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHP 269

Query: 37  ---SQAPRPPLQPEP 2
                AP  P+ P P
Sbjct: 270 PPHQYAPMRPMAPRP 284


>tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_43574 PE=4 SV=1
          Length = 499

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
 Frame = +2

Query: 197 SWQAMMEVWDVIQDTYSLACLLRM-GSLCTMPLVMSFHSNLLIAHSLKGLTCQIWDLEQR 373
           SW   ++VWD+ +      CLL + GS     L  S+HS+ ++A      T ++WD+   
Sbjct: 347 SWDHSLKVWDMERQD----CLLTLNGSRVVSCLDTSYHSSGIVATGHPDCTVRLWDVRID 402

Query: 374 GTVDRSMGL 400
            T + S+ L
Sbjct: 403 ATNESSLAL 411


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
           PE=4 SV=1
          Length = 791

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
 Frame = -3

Query: 217 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 38
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P H++G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHP 269

Query: 37  ---SQAPRPPLQPEP 2
                AP  P+ P P
Sbjct: 270 PPHQYAPMRPMAPRP 284


>tr|A8JCM8|A8JCM8_CHLRE SM/Sec1-family protein OS=Chlamydomonas
           reinhardtii GN=VPS45 PE=4 SV=1
          Length = 620

 Score = 34.7 bits (78), Expect = 4.4
 Identities = 36/113 (31%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +1

Query: 49  TGDPVRTMGGGFKGDLPQEHVSDDKNGDATQFKRL-----DGAAEAANAGYSIPVLASYD 213
           TGD V T+    K   P+E +     G   +  +      D A  AANAG  +P  AS  
Sbjct: 505 TGDEVATLTANAKRAPPREVIVFVLGGTTYEEAKAVAEMNDRANAAANAGPGVPAGASPS 564

Query: 214 GGVGCDTRHVFSGMLAENGQSMYYA--PGYEFPQQSPYCSQPQGAYMSNMGSG 366
           GG     R V  G    N Q    A   G   PQ +      QGA +++ GSG
Sbjct: 565 GGQLPTPRVVLGGTGILNSQMFLSALTSGLNIPQSA------QGAGVTSSGSG 611