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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950913
Clone id TST38A01NGRL0009_P16
Library
Length 512
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_P16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGCGCGGGTATGGGGCATGAATGGAAGAG
CGTGTATTTGGATGCGGTGCTGGTGAGCGTGGGGATGGTGATGCTGCTGATCTTCCCTGC
AAGGCTCTCTTACAGAGTTTGGAAGGCTCCCGACCCCGCCTAACTCCGCCTCTACCACTT
GGCTCTGCCGGCTTGGGCGCCCTCCGCTCTCCAGGATGGTCTCAAAAATGGAATCTTTGT
GGTGCGAACGGTGATTAGTACCATCATGTCCTCCTCCCTTCTTGCTACAGCGGCACTCAC
GATGACTACGATGCTGGGGATTGTATTTATAAATGATAGATCATGTTTAGCATGTGTAAA
GGCGGATGCGTTGATGCTGCGTGCCTGGGGCCTTCCTGTTGCACTTCAATTTAAGTTGGC
AGCGTTCTGTGCCTTGTTTTTTTATTGCGTCGGTGTGCTATGCTCTGTCGGCTACGTTTT
ATGGCTATGCAATCTTATTGTTGGGCGTGCTT
■■Homology search results ■■ -
sp_hit_id Q9BYP8
Definition sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo sapiens
Align length 26
Score (bit) 32.7
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950913|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P16, 5'
         (512 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo sa...    33   1.0  
sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus musc...    31   2.9  
sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 OS=Homo sapiens ...    31   3.8  
sp|Q9USW4|YHZ9_SCHPO Uncharacterized protein C21B10.09 OS=Schizo...    30   6.5  
sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo...    30   6.5  

>sp|Q9BYP8|KR171_HUMAN Keratin-associated protein 17-1 OS=Homo
           sapiens GN=KRTAP17-1 PE=2 SV=1
          Length = 105

 Score = 32.7 bits (73), Expect = 1.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 355 CKGGCVDAACLGPSCCTSI*VGSVLC 432
           C GGC  ++C G SCC S   G V C
Sbjct: 71  CGGGCCGSSCCGSSCCGSGCCGPVCC 96


>sp|Q62220|KRA54_MOUSE Keratin-associated protein 5-4 OS=Mus
           musculus GN=Krtap5-4 PE=2 SV=1
          Length = 223

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 355 CKGGCVDAACLGPSCCTS 408
           CKGGC  ++C  P CC S
Sbjct: 70  CKGGCCQSSCCKPCCCQS 87


>sp|O76050|NEUL1_HUMAN Neuralized-like protein 1 OS=Homo sapiens
           GN=NEURL PE=2 SV=1
          Length = 574

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -2

Query: 310 RSHRECRCSKKGGGHDGTNHRSHHKDSIFETILESGGRPS 191
           R H +      GG    T+HR HHK      +L SGG P+
Sbjct: 21  RGHPQNLKDSIGGPFPVTSHRCHHKQKHCPAVLPSGGLPA 60


>sp|Q9USW4|YHZ9_SCHPO Uncharacterized protein C21B10.09
           OS=Schizosaccharomyces pombe GN=SPBC21B10.09 PE=2 SV=1
          Length = 519

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 396 LLHFNLSWQRSVPCFFIASVCYALSATFYGYAILLLGV 509
           L++   +W+   P FF   +CY L+A+F     + LGV
Sbjct: 361 LVYMVSNWKHRFPVFFPIFLCYTLNASFSTIQFVALGV 398


>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo
           sapiens GN=TOPORS PE=1 SV=1
          Length = 1045

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
 Frame = -2

Query: 325 YNPQHRSHRECRCS----KKGGGHDGTNHRSHH 239
           YN +HR     R S    +   GHD  NHR HH
Sbjct: 587 YNHRHRKRGRSRSSDSRSQSRSGHDQKNHRKHH 619
tr_hit_id A9TRU4
Definition tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 71
Score (bit) 50.1
E-value 6.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950913|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P16, 5'
         (512 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella paten...    50   6e-05
tr|A9RNV6|A9RNV6_PHYPA Predicted protein (Fragment) OS=Physcomit...    44   0.005
tr|Q9FT41|Q9FT41_ARATH Putative uncharacterized protein AT5g2479...    41   0.030
tr|Q9FLU4|Q9FLU4_ARATH Arabidopsis thaliana genomic DNA, chromos...    40   0.067
tr|Q9LXB0|Q9LXB0_ARATH Putative uncharacterized protein F12B17_7...    39   0.11 
tr|Q3E7R7|Q3E7R7_ARATH Uncharacterized protein At5g10580.2 OS=Ar...    39   0.11 
tr|Q9LV18|Q9LV18_ARATH Emb|CAA16536.1 (Putative uncharacterized ...    37   0.43 
tr|B0WZS9|B0WZS9_CULQU Putative uncharacterized protein OS=Culex...    35   1.6  
tr|Q9C5C1|Q9C5C1_ARATH Putative uncharacterized protein At4g3133...    35   2.1  
tr|B7FKT7|B7FKT7_MEDTR Putative uncharacterized protein OS=Medic...    35   2.8  
tr|B8M4S9|B8M4S9_9EURO Metalloreductase transmembrane component,...    35   2.8  
tr|Q6YZV5|Q6YZV5_ORYSJ Os08g0521000 protein OS=Oryza sativa subs...    34   3.7  
tr|A2YX73|A2YX73_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.7  
tr|A2YX57|A2YX57_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.7  
tr|A5C5T0|A5C5T0_VITVI Putative uncharacterized protein (Chromos...    34   4.8  
tr|Q5PAD0|Q5PAD0_ANAMM Pseudouridine synthase OS=Anaplasma margi...    33   8.1  

>tr|A9TRU4|A9TRU4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_197597 PE=4 SV=1
          Length = 246

 Score = 50.1 bits (118), Expect = 6e-05
 Identities = 24/71 (33%), Positives = 43/71 (60%)
 Frame = +2

Query: 53  WKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKNG 232
           W+S +LD VLV +G+++L ++ A L Y V   P+   + + HL   +W  + + D  KNG
Sbjct: 3   WESRFLDMVLVPLGILLLAVYHAYLWYMVKFNPEKTVIGVNHLNRQSWVRNIMSDSEKNG 62

Query: 233 IFVVRTVISTI 265
           +  V+T+ ++I
Sbjct: 63  VLAVQTLRNSI 73


>tr|A9RNV6|A9RNV6_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_26444 PE=4 SV=1
          Length = 212

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 23/66 (34%), Positives = 40/66 (60%)
 Frame = +2

Query: 68  LDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKNGIFVVR 247
           LDA+LV +G++++L +  RL ++V  AP    + + HLA   W  S ++D  K  I  V+
Sbjct: 8   LDAILVPLGLLIILAYQVRLVWKVRCAPLLTAIGVNHLARRHWVESVMKDNDKKNILAVQ 67

Query: 248 TVISTI 265
           ++ +TI
Sbjct: 68  SLRNTI 73


>tr|Q9FT41|Q9FT41_ARATH Putative uncharacterized protein AT5g24790
           OS=Arabidopsis thaliana GN=At5g24790 PE=4 SV=1
          Length = 246

 Score = 41.2 bits (95), Expect = 0.030
 Identities = 21/68 (30%), Positives = 35/68 (51%)
 Frame = +2

Query: 50  EWKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKN 229
           EWK  YLDA+LV + ++M++ +   LS+ V   P    L +       W  + ++D  K 
Sbjct: 2   EWKKWYLDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKDNQKT 61

Query: 230 GIFVVRTV 253
            I  V+T+
Sbjct: 62  NILAVQTL 69


>tr|Q9FLU4|Q9FLU4_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, TAC clone:K18P6 (At5g24600) OS=Arabidopsis thaliana
           GN=At5g24600 PE=2 SV=1
          Length = 248

 Score = 40.0 bits (92), Expect = 0.067
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = +2

Query: 56  KSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKNGI 235
           K  YLD  LV +G+ +++ +   L YR+   P    + L       W  + ++D  KNG+
Sbjct: 2   KREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNGV 61

Query: 236 FVVRTVISTI 265
             V+T+ + I
Sbjct: 62  LAVQTLRNNI 71


>tr|Q9LXB0|Q9LXB0_ARATH Putative uncharacterized protein F12B17_70
           (AT5g10580/F12B17_70) OS=Arabidopsis thaliana
           GN=F12B17_70 PE=2 SV=1
          Length = 246

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +2

Query: 50  EWKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKN 229
           EW+  YLDAVLV   ++M+  +   L Y+V   P    +     A  +W  + ++D  K 
Sbjct: 2   EWEKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEKK 61

Query: 230 GIFVVRTVISTI 265
            I  V+T+ +TI
Sbjct: 62  NILAVQTLRNTI 73


>tr|Q3E7R7|Q3E7R7_ARATH Uncharacterized protein At5g10580.2
           OS=Arabidopsis thaliana GN=At5g10580 PE=4 SV=1
          Length = 192

 Score = 39.3 bits (90), Expect = 0.11
 Identities = 23/72 (31%), Positives = 37/72 (51%)
 Frame = +2

Query: 50  EWKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKN 229
           EW+  YLDAVLV   ++M+  +   L Y+V   P    +     A  +W  + ++D  K 
Sbjct: 2   EWEKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEKK 61

Query: 230 GIFVVRTVISTI 265
            I  V+T+ +TI
Sbjct: 62  NILAVQTLRNTI 73


>tr|Q9LV18|Q9LV18_ARATH Emb|CAA16536.1 (Putative uncharacterized
           protein At3g18215) OS=Arabidopsis thaliana GN=At3g18215
           PE=2 SV=1
          Length = 244

 Score = 37.4 bits (85), Expect = 0.43
 Identities = 21/71 (29%), Positives = 34/71 (47%)
 Frame = +2

Query: 53  WKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKNG 232
           W    LD VLV  G+V+++ +   L Y +   P    + L   +   W  S + + LKNG
Sbjct: 2   WTEESLDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPLKNG 61

Query: 233 IFVVRTVISTI 265
              V+T+ + I
Sbjct: 62  TLAVQTIRNNI 72


>tr|B0WZS9|B0WZS9_CULQU Putative uncharacterized protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ012711 PE=4 SV=1
          Length = 443

 Score = 35.4 bits (80), Expect = 1.6
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 8/67 (11%)
 Frame = +1

Query: 226 KWNLCGANGD*YHHV--------LLPSCYSGTHDDYDAGDCIYK**IMFSMCKGGCVDAA 381
           KW+    N D Y           LLP C  G   D   G+C         +C GGC++  
Sbjct: 55  KWHELDINSDYYRDTCELEFKTELLPECCPGYEKD-PRGEC-------HPVCTGGCINGK 106

Query: 382 CLGPSCC 402
           C GP+ C
Sbjct: 107 CAGPNRC 113


>tr|Q9C5C1|Q9C5C1_ARATH Putative uncharacterized protein At4g31330
           OS=Arabidopsis thaliana GN=At4g31330 PE=2 SV=1
          Length = 239

 Score = 35.0 bits (79), Expect = 2.1
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +2

Query: 50  EWKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKN 229
           EW+  YLD +LV +G+++   +   L +++   P    +     A   W  S ++D  K 
Sbjct: 2   EWRECYLDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIKDNDKK 61

Query: 230 GIFVVRTVISTI 265
            I  V+T+ + I
Sbjct: 62  NILAVQTLRNCI 73


>tr|B7FKT7|B7FKT7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 232

 Score = 34.7 bits (78), Expect = 2.8
 Identities = 18/72 (25%), Positives = 36/72 (50%)
 Frame = +2

Query: 50  EWKSVYLDAVLVSVGMVMLLIFPARLSYRVWKAPDPA*LRLYHLALPAWAPSALQDGLKN 229
           EW+  YLD +LV + M++ + +   L ++V   P    + +       W  + ++D  K 
Sbjct: 2   EWRKCYLDVILVPLAMLISIGYHVWLWHKVRTQPHTTIVGINASGRRNWVNAMMKDNEKK 61

Query: 230 GIFVVRTVISTI 265
            I  V+++ +TI
Sbjct: 62  NILAVQSLRNTI 73