DK950918
Clone id TST38A01NGRL0009_P22
Library
Length 220
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_P22. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CTCAAAAAAAAAAAAAAAGGGGCGGGGACTATTCTTTGCCCATCGGCTCTAGCTCGTACT
CCCAAAAGATCTTAGCCCATCAATTCTGCCTGTGGCAACGGAACTACAGGACTTACCATC
GTCTCTGCCGTTGGAGGATGTGCGTCGCCTGTCTCGCGTTACTTCTTATGTAGATTGCCC
TGTTCCTGCTGATTATGTCATGAACGTGATAACAGGTGCG
■■Homology search results ■■ -
sp_hit_id Q48D34
Definition sp|Q48D34|EFTU_PSE14 Elongation factor Tu OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6)
Align length 24
Score (bit) 33.5
E-value 0.33
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950918|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P22, 5'
(220 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q48D34|EFTU_PSE14 Elongation factor Tu OS=Pseudomonas syringa... 33 0.33
sp|Q5GWR8|EFTU_XANOR Elongation factor Tu OS=Xanthomonas oryzae ... 33 0.44
sp|Q2NZX1|EFTU_XANOM Elongation factor Tu OS=Xanthomonas oryzae ... 33 0.44
sp|Q877T5|EFTU_VIBPA Elongation factor Tu OS=Vibrio parahaemolyt... 33 0.44
sp|Q3SLQ1|EFTU_THIDA Elongation factor Tu OS=Thiobacillus denitr... 33 0.44
sp|Q47LJ1|EFTU_THEFY Elongation factor Tu OS=Thermobifida fusca ... 33 0.44
sp|P74227|EFTU_SYNY3 Elongation factor Tu OS=Synechocystis sp. (... 33 0.44
sp|Q0ID59|EFTU_SYNS3 Elongation factor Tu OS=Synechococcus sp. (... 33 0.44
sp|Q1GP97|EFTU_SPHAL Elongation factor Tu OS=Sphingopyxis alaske... 33 0.44
sp|Q5LMR5|EFTU_SILPO Elongation factor Tu OS=Silicibacter pomero... 33 0.44
sp|A8G1F0|EFTU_SHESH Elongation factor Tu OS=Shewanella sedimini... 33 0.44
sp|P33169|EFTU_SHEPU Elongation factor Tu OS=Shewanella putrefac... 33 0.44
sp|A4YBY5|EFTU_SHEPC Elongation factor Tu OS=Shewanella putrefac... 33 0.44
sp|A8GYW2|EFTU_SHEPA Elongation factor Tu OS=Shewanella pealeana... 33 0.44
sp|Q12SW1|EFTU_SHEDO Elongation factor Tu OS=Shewanella denitrif... 33 0.44
sp|A6WHR4|EFTU_SHEB8 Elongation factor Tu OS=Shewanella baltica ... 33 0.44
sp|Q1RHL9|EFTU_RICBR Elongation factor Tu OS=Rickettsia bellii (... 33 0.44
sp|A8GVB2|EFTU_RICB8 Elongation factor Tu OS=Rickettsia bellii (... 33 0.44
sp|A4WVL0|EFTU_RHOS5 Elongation factor Tu OS=Rhodobacter sphaero... 33 0.44
sp|Q1Q8P2|EFTU_PSYCK Elongation factor Tu OS=Psychrobacter cryoh... 33 0.44
sp|Q4FQG6|EFTU_PSYA2 Elongation factor Tu OS=Psychrobacter arcti... 33 0.44
sp|Q4ZMP2|EFTU_PSEU2 Elongation factor Tu OS=Pseudomonas syringa... 33 0.44
sp|Q9TJQ8|EFTU_PROWI Elongation factor Tu, plastid OS=Prototheca... 33 0.44
sp|B0JSE0|EFTU_MICAN Elongation factor Tu OS=Microcystis aerugin... 33 0.44
sp|A0ALY8|EFTU_LISW6 Elongation factor Tu OS=Listeria welshimeri... 33 0.44
sp|Q8Y422|EFTU_LISMO Elongation factor Tu OS=Listeria monocytoge... 33 0.44
sp|Q71WB9|EFTU_LISMF Elongation factor Tu OS=Listeria monocytoge... 33 0.44
sp|Q5WZL4|EFTU_LEGPL Elongation factor Tu OS=Legionella pneumoph... 33 0.44
sp|Q5ZYP5|EFTU_LEGPH Elongation factor Tu OS=Legionella pneumoph... 33 0.44
sp|A5IHR6|EFTU_LEGPC Elongation factor Tu OS=Legionella pneumoph... 33 0.44

>sp|Q48D34|EFTU_PSE14 Elongation factor Tu OS=Pseudomonas syringae
pv. phaseolicola (strain 1448A / Race 6) GN=tuf PE=3
SV=1
Length = 397

Score = 33.5 bits (75), Expect = 0.33
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2

Query: 149 LSRVTSYVDCPVPADYVMNVITGA 220
L+R ++VDCP ADYV N+ITGA
Sbjct: 73 LTRHYAHVDCPGHADYVKNMITGA 96


>sp|Q5GWR8|EFTU_XANOR Elongation factor Tu OS=Xanthomonas oryzae pv.
oryzae GN=tuf1 PE=3 SV=1
Length = 396

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q2NZX1|EFTU_XANOM Elongation factor Tu OS=Xanthomonas oryzae pv.
oryzae (strain MAFF 311018) GN=tuf1 PE=3 SV=1
Length = 396

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q877T5|EFTU_VIBPA Elongation factor Tu OS=Vibrio
parahaemolyticus GN=tufA PE=3 SV=1
Length = 394

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q3SLQ1|EFTU_THIDA Elongation factor Tu OS=Thiobacillus
denitrificans (strain ATCC 25259) GN=tuf1 PE=3 SV=1
Length = 396

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q47LJ1|EFTU_THEFY Elongation factor Tu OS=Thermobifida fusca
(strain YX) GN=tuf PE=3 SV=1
Length = 397

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 76 SRHYAHVDCPGHADYVKNMITGA 98


>sp|P74227|EFTU_SYNY3 Elongation factor Tu OS=Synechocystis sp.
(strain PCC 6803) GN=tuf PE=1 SV=1
Length = 399

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q0ID59|EFTU_SYNS3 Elongation factor Tu OS=Synechococcus sp.
(strain CC9311) GN=tuf PE=3 SV=1
Length = 399

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>sp|Q1GP97|EFTU_SPHAL Elongation factor Tu OS=Sphingopyxis
alaskensis GN=tuf PE=3 SV=1
Length = 397

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 75 SRHYAHVDCPGHADYVKNMITGA 97


>sp|Q5LMR5|EFTU_SILPO Elongation factor Tu OS=Silicibacter pomeroyi
GN=tuf1 PE=3 SV=1
Length = 391

Score = 33.1 bits (74), Expect = 0.44
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 69 SRHYAHVDCPGHADYVKNMITGA 91


tr_hit_id O31299
Definition tr|O31299|O31299_9ENTR Elongation factor Tu (Fragment) OS=Buchnera aphidicola
Align length 24
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950918|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P22, 5'
(220 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|O31299|O31299_9ENTR Elongation factor Tu (Fragment) OS=Buchne... 34 3.2
tr|Q8KT93|Q8KT93_RICBE Elongation factor Tu OS=Rickettsia bellii... 34 4.2
tr|Q9S513|Q9S513_LOWBP Elongation factor Tu OS=Loofah witches'-b... 33 5.5
tr|Q0DZV9|Q0DZV9_ORYSJ Os02g0595700 protein OS=Oryza sativa subs... 33 5.5
tr|B2VK35|B2VK35_ERWT9 Elongation factor Tu-A OS=Erwinia tasmani... 33 7.2
tr|B2SQP4|B2SQP4_XANOP Translation elongation factor Tu OS=Xanth... 33 7.2
tr|B1KMY5|B1KMY5_SHEWM Elongation factor Tu OS=Shewanella woodyi... 33 7.2
tr|A9IJ05|A9IJ05_BORPD Elongation factor Tu OS=Bordetella petrii... 33 7.2
tr|A1REB2|A1REB2_SHESW Elongation factor Tu OS=Shewanella sp. (s... 33 7.2
tr|A1REA0|A1REA0_SHESW Elongation factor Tu OS=Shewanella sp. (s... 33 7.2
tr|Q69F83|Q69F83_LIBAS Elongation factor Tu (Fragment) OS=Liberi... 33 7.2
tr|Q4EP16|Q4EP16_LISMO Elongation factor Tu OS=Listeria monocyto... 33 7.2
tr|Q4EJM9|Q4EJM9_LISMO Elongation factor Tu OS=Listeria monocyto... 33 7.2
tr|Q1YVR4|Q1YVR4_PHOPR Elongation factor Tu (Fragment) OS=Photob... 33 7.2
tr|Q1V6F0|Q1V6F0_VIBAL Elongation factor Tu OS=Vibrio alginolyti... 33 7.2
tr|Q1KZT2|Q1KZT2_9GAMM Elongation factor Tu OS=Pseudoalteromonas... 33 7.2
tr|Q1JXE6|Q1JXE6_DESAC Elongation factor Tu OS=Desulfuromonas ac... 33 7.2
tr|Q1JVC9|Q1JVC9_DESAC Elongation factor Tu OS=Desulfuromonas ac... 33 7.2
tr|Q0QDJ7|Q0QDJ7_9BORD Elongation factor Tu (Fragment) OS=Bordet... 33 7.2
tr|Q0QDJ5|Q0QDJ5_ALCDE Elongation factor Tu (Fragment) OS=Alcali... 33 7.2
tr|Q0QDJ3|Q0QDJ3_9BORD Elongation factor Tu (Fragment) OS=Bordet... 33 7.2
tr|B8F675|B8F675_HAEPR Elongation factor Tu OS=Haemophilus paras... 33 7.2
tr|B8EBK7|B8EBK7_9GAMM Translation elongation factor Tu OS=Shewa... 33 7.2
tr|B8CND0|B8CND0_9GAMM Translation elongation factor Tu OS=Shewa... 33 7.2
tr|B8CNB8|B8CNB8_9GAMM Translation elongation factor Tu OS=Shewa... 33 7.2
tr|B7JUP5|B7JUP5_SYNP8 Translation elongation factor Tu OS=Synec... 33 7.2
tr|B6F2S2|B6F2S2_LIBAS Elongation factor Tu OS=Candidatus Liberi... 33 7.2
tr|B4C015|B4C015_9CHRO Translation elongation factor Tu OS=Cyano... 33 7.2
tr|A6Y974|A6Y974_LIBAS Elongation factor Tu OS=Liberibacter asia... 33 7.2
tr|A6B9V5|A6B9V5_VIBPA Elongation factor Tu (Fragment) OS=Vibrio... 33 7.2

>tr|O31299|O31299_9ENTR Elongation factor Tu (Fragment) OS=Buchnera
aphidicola GN=tuf PE=3 SV=1
Length = 365

Score = 34.3 bits (77), Expect = 3.2
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2

Query: 149 LSRVTSYVDCPVPADYVMNVITGA 220
LSR ++VDCP ADY+ N+ITGA
Sbjct: 54 LSRHYAHVDCPGHADYIKNMITGA 77


>tr|Q8KT93|Q8KT93_RICBE Elongation factor Tu OS=Rickettsia bellii
GN=tuf PE=3 SV=1
Length = 395

Score = 33.9 bits (76), Expect = 4.2
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2

Query: 149 LSRVTSYVDCPVPADYVMNVITGA 220
+SR ++VDCP ADYV N+ITGA
Sbjct: 74 MSRHYAHVDCPGHADYVKNMITGA 97


>tr|Q9S513|Q9S513_LOWBP Elongation factor Tu OS=Loofah
witches'-broom phytoplasma GN=tuf PE=3 SV=1
Length = 395

Score = 33.5 bits (75), Expect = 5.5
Identities = 12/19 (63%), Positives = 17/19 (89%)
Frame = +2

Query: 164 SYVDCPVPADYVMNVITGA 220
+++DCPV ADY+ N+ITGA
Sbjct: 76 AHIDCPVHADYIKNMITGA 94


>tr|Q0DZV9|Q0DZV9_ORYSJ Os02g0595700 protein OS=Oryza sativa subsp.
japonica GN=Os02g0595700 PE=4 SV=1
Length = 220

Score = 33.5 bits (75), Expect = 5.5
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +2

Query: 149 LSRVTSYVDCPVPADYVMNVITGA 220
L+R ++VDCP ADYV N+ITGA
Sbjct: 4 LARHYAHVDCPGHADYVKNMITGA 27


>tr|B2VK35|B2VK35_ERWT9 Elongation factor Tu-A OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=tufA PE=4
SV=1
Length = 394

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>tr|B2SQP4|B2SQP4_XANOP Translation elongation factor Tu
OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=tuf
PE=4 SV=1
Length = 384

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 62 SRHYAHVDCPGHADYVKNMITGA 84


>tr|B1KMY5|B1KMY5_SHEWM Elongation factor Tu OS=Shewanella woodyi
(strain ATCC 51908 / MS32) GN=Swoo_4692 PE=3 SV=1
Length = 394

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>tr|A9IJ05|A9IJ05_BORPD Elongation factor Tu OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=tuf1
PE=4 SV=1
Length = 396

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96


>tr|A1REB2|A1REB2_SHESW Elongation factor Tu OS=Shewanella sp.
(strain W3-18-1) GN=Sputw3181_0154 PE=3 SV=1
Length = 412

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 92 SRHYAHVDCPGHADYVKNMITGA 114


>tr|A1REA0|A1REA0_SHESW Elongation factor Tu OS=Shewanella sp.
(strain W3-18-1) GN=Sputw3181_0142 PE=3 SV=1
Length = 394

Score = 33.1 bits (74), Expect = 7.2
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +2

Query: 152 SRVTSYVDCPVPADYVMNVITGA 220
SR ++VDCP ADYV N+ITGA
Sbjct: 74 SRHYAHVDCPGHADYVKNMITGA 96