DK950920
Clone id TST38A01NGRL0009_P24
Library
Length 644
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0009_P24. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
CATCATTCGTATCTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATA
GCTATGTCGGTTTGAGAAGCAGTGCGCTTCTGCTTCAAAGCTCAACAATTGGCATCAGAG
CATCGGGTTCATGCTCTCAGCAAGTAGGAGACTTAGTATTGATGAACGAGCTCAACCGAA
GATTAAGTTGGGTAGGAAATTCAACTGAGATAAGGCAACCAGCAAACAACAATTTTGACC
AGTCTAAGGTGCTTGGAGAAGGCAACGGCATCAACATCAATAAAGGGCAGCCAGCAATGA
TCCCTACCTACCCAATAGCATTTGCAGACGGTGGTTCAGCCTCACAAGAGGTAGCCTGAG
CCACACCCCAGCCGGCGATAGAAACCATTTGGCCACAAAAGGGAAATGCAGCTACATGCT
ATGCACTCTGTGTCGCATACCCTCCACCTCGACGAGCAAGCCACACTATTATGTCCTTCT
GATGCATCCTCTTGCTCACATCTGGTCCTTGCATAGCTTCCCCGTATGATATACAGTTGA
CATCACTAACCTGCTTAGAAGTAAAGGAGTTGTTTGTTGTGTTAGACAGCTCANAATCCA
GGCAAGGTTTATCAAAATGATGGCCCGAGGCTTCAGCTTCACAG
■■Homology search results ■■ -
sp_hit_id Q0WNY5
Definition sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18 OS=Arabidopsis thaliana
Align length 52
Score (bit) 32.3
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950920|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P24, 5'
(644 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18 OS... 32 2.2
sp|Q8ZRJ7|FADE_SALTY Acyl-coenzyme A dehydrogenase OS=Salmonella... 30 8.2
sp|Q8Z937|FADE_SALTI Acyl-coenzyme A dehydrogenase OS=Salmonella... 30 8.2

>sp|Q0WNY5|WAKLN_ARATH Wall-associated receptor kinase-like 18
OS=Arabidopsis thaliana GN=WAKL18 PE=2 SV=1
Length = 793

Score = 32.3 bits (72), Expect = 2.2
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +3

Query: 147 GDLVLMNELNRRLSWVG-----NSTEIRQPANNNFDQSKVLGEGNGININKG 287
G L+L+ ELN R +V NS E+ + A NF +++VLG G + KG
Sbjct: 420 GGLLLLQELNTREGYVEKTRVFNSRELEK-ATENFSENRVLGHGGQGTVYKG 470


>sp|Q8ZRJ7|FADE_SALTY Acyl-coenzyme A dehydrogenase OS=Salmonella
typhimurium GN=fadE PE=2 SV=1
Length = 814

Score = 30.4 bits (67), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2

Query: 314 NSICRRWFSLTRGSLSHTPAGD 379
N++ W LTRG SHTP GD
Sbjct: 549 NTVRSFWLGLTRGLTSHTPTGD 570


>sp|Q8Z937|FADE_SALTI Acyl-coenzyme A dehydrogenase OS=Salmonella
typhi GN=fadE PE=3 SV=1
Length = 814

Score = 30.4 bits (67), Expect = 8.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2

Query: 314 NSICRRWFSLTRGSLSHTPAGD 379
N++ W LTRG SHTP GD
Sbjct: 549 NTVRSFWLGLTRGLTSHTPTGD 570


tr_hit_id A6ED73
Definition tr|A6ED73|A6ED73_9SPHI Putative uncharacterized protein OS=Pedobacter sp. BAL39
Align length 74
Score (bit) 38.1
E-value 0.46
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950920|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0009_P24, 5'
(644 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A6ED73|A6ED73_9SPHI Putative uncharacterized protein OS=Pedob... 38 0.46
tr|B1J6Y9|B1J6Y9_PSEPW Sulfatase OS=Pseudomonas putida (strain W... 35 5.1
tr|Q2W140|Q2W140_MAGMM Methyl-accepting chemotaxis protein OS=Ma... 34 8.8

>tr|A6ED73|A6ED73_9SPHI Putative uncharacterized protein
OS=Pedobacter sp. BAL39 GN=PBAL39_25275 PE=4 SV=1
Length = 1729

Score = 38.1 bits (87), Expect = 0.46
Identities = 21/74 (28%), Positives = 38/74 (51%)
Frame = +3

Query: 78 SSALLLQSSTIGIRASGSCSQQVGDLVLMNELNRRLSWVGNSTEIRQPANNNFDQSKVLG 257
+ + L ++ A+ + S + G+ V +N+LN+ LS G I P N++ D + ++G
Sbjct: 342 AGGITLPELSLSFDAAQNLSIKGGNSVSLNDLNQSLSLAGTILSISGPRNSHVDLAALVG 401

Query: 258 EGNGININKGQPAM 299
GNG G A+
Sbjct: 402 SGNGNGNGNGISAV 415


>tr|B1J6Y9|B1J6Y9_PSEPW Sulfatase OS=Pseudomonas putida (strain
W619) GN=PputW619_1986 PE=3 SV=1
Length = 555

Score = 34.7 bits (78), Expect = 5.1
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3

Query: 192 VGNSTEIRQPANNNFDQSKVLGEGNGININKGQPAMIPTYPIAFADGG 335
+G + E+ QP N F++S V+ EG N + + + P YP F G
Sbjct: 144 LGRAPEL-QPQNRGFEESYVVLEGGSANYRQKEMGLFPNYPATFLHNG 190


>tr|Q2W140|Q2W140_MAGMM Methyl-accepting chemotaxis protein
OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
700264) GN=amb3631 PE=4 SV=1
Length = 442

Score = 33.9 bits (76), Expect = 8.8
Identities = 26/105 (24%), Positives = 47/105 (44%)
Frame = +3

Query: 75 RSSALLLQSSTIGIRASGSCSQQVGDLVLMNELNRRLSWVGNSTEIRQPANNNFDQSKVL 254
RS +LL+QS + I +G+ +Q V L + E++RR++ + STE ++ L
Sbjct: 48 RSRSLLIQSVGMSIHLNGTVTQAVHTLRSIREMSRRMATISASTEELVSTVQAIARTSEL 107

Query: 255 GEGNGININKGQPAMIPTYPIAFADGGSASQEVA*ATPQPAIETI 389
N ++ +D G+ S E +T Q + T+
Sbjct: 108 AAANARSVQD------------VSDEGARSTEAVVSTMQNIVTTV 140