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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950928
Clone id TST38A01NGRL0010_A10
Library
Length 706
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_A10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAGCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGTTGCCGGC
TGCATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACGCAGCGGCAG
CTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCGCGTGAATCAGCACGGTGGGC
TATTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTTCCTCCTC
CTCCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAGCTCGAAGTGCTT
GCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTCCCTACAT
CCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTTCATGTCA
CTGCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTTACGGACA
GAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAAGCGTACCTGCTG
CTGCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGGATAGGTTGAAGA
CTGGCTATCTCANATTCAAGGAAAACTACATAAAANATCAAGCACTTGTGAAGTCGCTGG
CAGAAACTCAGACGCCTCCNTACATGATTATTGCCTGTGCTGATTC
■■Homology search results ■■ -
sp_hit_id P17067
Definition sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sativum
Align length 40
Score (bit) 45.1
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950928|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A10, 5'
         (706 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum sa...    45   4e-04
sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2...    41   0.005
sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=...    41   0.005
sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis P...    41   0.005
sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thalian...    41   0.007
sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinac...    40   0.012
sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=...    40   0.016
sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicoti...    39   0.021
sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic OS=Arabid...    39   0.027
sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeu...    36   0.23 
sp|P0ABE9|CYNT_ECOLI Carbonic anhydrase 1 OS=Escherichia coli (s...    30   9.7  
sp|P0ABF0|CYNT_ECO57 Carbonic anhydrase 1 OS=Escherichia coli O1...    30   9.7  

>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score = 45.1 bits (105), Expect = 4e-04
 Identities = 21/40 (52%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
 Frame = +3

Query: 588 DRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           +R+KTG+L FK E Y K  AL   LA+ Q+PP+M+ AC+D
Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSD 161


>sp|P46511|CAHX_FLABR Carbonic anhydrase OS=Flaveria brownii PE=2
           SV=1
          Length = 330

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+K+G++ FK E ++   AL   LA+ Q+P +M+ AC+D
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSD 163


>sp|P46510|CAHX_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=2
          Length = 330

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+K+G++ FK E ++   AL   LA+ Q+P +M+ AC+D
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSD 163


>sp|P46512|CAH1_FLALI Carbonic anhydrase 1 OS=Flaveria linearis PE=2
           SV=1
          Length = 330

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/42 (40%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+K+G++ FK E ++   AL   LA+ Q+P +M+ AC+D
Sbjct: 122 PVERIKSGFVKFKTEKFVTNPALYDELAKGQSPKFMVFACSD 163


>sp|P42737|CAH2_ARATH Carbonic anhydrase 2 OS=Arabidopsis thaliana
           GN=CA2 PE=1 SV=2
          Length = 259

 Score = 40.8 bits (94), Expect = 0.007
 Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+K G++ FK E Y    AL   LA+ Q+P YM+ AC+D
Sbjct: 51  PVERIKEGFVTFKKEKYETNPALYGELAKGQSPKYMVFACSD 92


>sp|P16016|CAHC_SPIOL Carbonic anhydrase, chloroplastic OS=Spinacia
           oleracea PE=1 SV=2
          Length = 319

 Score = 40.0 bits (92), Expect = 0.012
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = +3

Query: 564 TEVETLPLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           T   + P+ R+K G++ FK E Y K  AL   L++ Q P +M+ AC+D
Sbjct: 105 TPSASYPVQRIKEGFIKFKKEKYEKNPALYGELSKGQAPKFMVFACSD 152


>sp|P46281|CAHX_FLAPR Carbonic anhydrase OS=Flaveria pringlei PE=2
           SV=1
          Length = 329

 Score = 39.7 bits (91), Expect = 0.016
 Identities = 16/42 (38%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+K+G++ FK E ++    L   LA+ Q+P +M+ AC+D
Sbjct: 121 PVERIKSGFVKFKTEKFVTNPVLYDELAKGQSPKFMVFACSD 162


>sp|P27141|CAHC_TOBAC Carbonic anhydrase, chloroplastic OS=Nicotiana
           tabacum PE=2 SV=1
          Length = 321

 Score = 39.3 bits (90), Expect = 0.021
 Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++ +K G++ FK E Y K  AL   L++ Q+P +M+ AC+D
Sbjct: 113 PVEHMKAGFIHFKTEKYEKNPALYGELSKGQSPKFMVFACSD 154


>sp|P27140|CAHC_ARATH Carbonic anhydrase, chloroplastic
           OS=Arabidopsis thaliana GN=CA1 PE=1 SV=2
          Length = 347

 Score = 38.9 bits (89), Expect = 0.027
 Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++ +K G++ FK E Y    AL   LA+ Q+P YM+ AC+D
Sbjct: 128 PVETIKQGFIKFKKEKYETNPALYGELAKGQSPKYMVFACSD 169


>sp|P40880|CAHC_HORVU Carbonic anhydrase, chloroplastic OS=Hordeum
           vulgare PE=2 SV=1
          Length = 324

 Score = 35.8 bits (81), Expect = 0.23
 Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++RLKTG+  FK E Y K     + L   Q P YM+ ACAD
Sbjct: 127 VERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACAD 167
tr_hit_id Q94CE4
Definition tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
Align length 41
Score (bit) 45.1
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950928|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A10, 5'
         (706 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    45   0.005
tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    45   0.005
tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    45   0.006
tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera GN=G...    44   0.010
tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    43   0.023
tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypiu...    43   0.023
tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum ...    43   0.023
tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis P...    42   0.029
tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra termina...    42   0.029
tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus GN...    42   0.038
tr|Q8W183|Q8W183_TOBAC Carbonic anhydrase OS=Nicotiana tabacum P...    41   0.086
tr|Q41089|Q41089_9ROSI Carbonic anhydrase OS=Populus tremula x P...    41   0.086
tr|Q41088|Q41088_9ROSI Carbonic anhydrase OS=Populus tremula x P...    41   0.086
tr|Q3E9H5|Q3E9H5_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.086
tr|Q2V377|Q2V377_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.086
tr|Q2V376|Q2V376_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.086
tr|A9PJH1|A9PJH1_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    41   0.086
tr|A9PIY3|A9PIY3_POPJC Carbonic anhydrase OS=Populus jackii PE=2...    41   0.086
tr|A9PEY8|A9PEY8_POPTR Carbonic anhydrase OS=Populus trichocarpa...    41   0.086
tr|A9PED7|A9PED7_POPTR Carbonic anhydrase OS=Populus trichocarpa...    41   0.086
tr|A8MQY4|A8MQY4_ARATH Carbonic anhydrase OS=Arabidopsis thalian...    41   0.086
tr|A9NSY6|A9NSY6_PICSI Carbonic anhydrase OS=Picea sitchensis PE...    40   0.11 
tr|B4FWC5|B4FWC5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.15 
tr|B4FQ79|B4FQ79_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.15 
tr|B4FNM0|B4FNM0_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.15 
tr|B7ZYT1|B7ZYT1_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.19 
tr|B6TGY7|B6TGY7_MAIZE Carbonic anhydrase OS=Zea mays PE=2 SV=1        40   0.19 
tr|B4FJQ5|B4FJQ5_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.19 
tr|Q2Q063|Q2Q063_FLAPR Carbonic anhydrase OS=Flaveria pringlei P...    39   0.25 
tr|Q2Q062|Q2Q062_FLALI Carbonic anhydrase OS=Flaveria linearis P...    39   0.25 

>tr|Q94CE4|Q94CE4_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 280

 Score = 45.1 bits (105), Expect = 0.005
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++R+KTG+  FK E Y+K   L   LA+TQTP +++ AC+D
Sbjct: 71  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSD 111


>tr|O64595|O64595_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g70410 PE=2 SV=1
          Length = 258

 Score = 45.1 bits (105), Expect = 0.005
 Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++R+KTG+  FK E Y+K   L   LA+TQTP +++ AC+D
Sbjct: 49  IERIKTGFTQFKTEKYLKNSTLFNHLAKTQTPKFLVFACSD 89


>tr|Q9ZUC2|Q9ZUC2_ARATH Carbonic anhydrase OS=Arabidopsis thaliana
           GN=At1g23730 PE=2 SV=1
          Length = 258

 Score = 44.7 bits (104), Expect = 0.006
 Identities = 20/41 (48%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++R+K+G+L FK  NY K   L  SLA++QTP +++ ACAD
Sbjct: 49  VERIKSGFLHFKTNNYEKNPTLYNSLAKSQTPKFLVFACAD 89


>tr|A7PM94|A7PM94_VITVI Carbonic anhydrase OS=Vitis vinifera
           GN=GSVIVT00020732001 PE=3 SV=1
          Length = 324

 Score = 43.9 bits (102), Expect = 0.010
 Identities = 20/42 (47%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+KTG++ FK E Y K  AL   LA+ Q+P +M+ AC+D
Sbjct: 116 PVERMKTGFIYFKKEKYDKNPALHAELAKGQSPKFMVFACSD 157


>tr|Q9XF69|Q9XF69_GOSHI Carbonic anhydrase (Fragment) OS=Gossypium
           hirsutum GN=CA1 PE=2 SV=1
          Length = 322

 Score = 42.7 bits (99), Expect = 0.023
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++RLK G++ FK E Y K  AL   LA+ Q+P YMI+AC+D
Sbjct: 115 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACSD 155


>tr|Q9SYW6|Q9SYW6_GOSHI Carbonic anhydrase (Fragment) OS=Gossypium
           hirsutum GN=CA2 PE=2 SV=1
          Length = 319

 Score = 42.7 bits (99), Expect = 0.023
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++RLK G++ FK E Y K  AL   LA+ Q+P YMI+AC+D
Sbjct: 112 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACSD 152


>tr|Q8LSC8|Q8LSC8_GOSHI Carbonic anhydrase OS=Gossypium hirsutum
           GN=CAH2 PE=3 SV=1
          Length = 326

 Score = 42.7 bits (99), Expect = 0.023
 Identities = 21/41 (51%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +3

Query: 585 LDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           ++RLK G++ FK E Y K  AL   LA+ Q+P YMI+AC+D
Sbjct: 119 VERLKEGFVYFKKEKYEKNPALYGELAKGQSPKYMIVACSD 159


>tr|Q84Y09|Q84Y09_FLABI Carbonic anhydrase OS=Flaveria bidentis PE=2
           SV=1
          Length = 258

 Score = 42.4 bits (98), Expect = 0.029
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+KTG+  FK E Y+K  AL   L++ Q+P +M  AC+D
Sbjct: 50  PVERIKTGFAKFKTEKYLKNPALYGELSKGQSPKFMAFACSD 91


>tr|A1XX45|A1XX45_9MAGN Carbonic anhydrase OS=Pachysandra terminalis
           PE=2 SV=1
          Length = 324

 Score = 42.4 bits (98), Expect = 0.029
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = +3

Query: 582 PLDRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           P++R+KTG++ FK E Y    AL   LA+ Q+P +M+ AC+D
Sbjct: 116 PIERMKTGFIHFKKEKYETNPALFGELAKGQSPKFMVFACSD 157


>tr|Q9XQB0|Q9XQB0_PHAAU Carbonic anhydrase OS=Phaseolus aureus
           GN=CipCa1 PE=2 SV=2
          Length = 328

 Score = 42.0 bits (97), Expect = 0.038
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
 Frame = +3

Query: 588 DRLKTGYLXFK-ENYIKXQALVKSLAETQTPPYMIIACAD 704
           DR+K+G+L FK E Y K  AL   LA+ Q+P +M+ AC+D
Sbjct: 122 DRIKSGFLYFKKEKYDKNPALYGELAKGQSPKFMVFACSD 161