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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950933
Clone id TST38A01NGRL0010_A15
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_A15. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CGCCATAAAATTTCCATGGATTCTTCCTTCCCGTAGAGCAGAAGATGGCTTTTAAGCTGC
TTGCAGAAAATGATTCTGTAGTCTCAGCAACACCAGACGACATTGGTAGGCTTCAGCTGC
AGTTCTCGTCCGTTTGCTTGCGTCACGCGCGCTTTGGCCGCAGCACTTCTTCTCCGCTTT
CGCAGCTCCGTCTTCCGTACAACGGAGGCAGGAACGCTAGGTCATGGGATAGATTATCTG
TTAAGAGAAGAGGAAAGAGGACGAAGGAAAACATACTAAGCGGCAGAAGCAGAAAAGAAC
AGCTAGAAACTAGGATCTGCCATGGCTTGGTTTCTTTTCACCAATGGATCTATGAGGGTA
GATGCAGAGAAGGGAGAGGCAATGTTTGTGGATGCTTTCTATGGAGTGCCTCGAAGGGAG
GACGGTTTTCCATGGCAGAGAATGGTGACAAACAACGGAAAAGAGAGAGGCAGCTCGTTT
TTTTTGCACTTTGTGCCCGGGCCATGGTGGCTTCACACATGGTTCAGTCCCCTCTACTAA
GTTTTCTGTGGTCAAATTGGCCAAGCATGGTAAAGGATTTGTCTGCTGGAGAGCAAGGGA
ATGGGAACAGAAATCCAATACACTGGAAACAACTCGGCCACAGAGAGCATGATCATGAAT
CTTCCCTTTCAAATGTTACCCGTTTCA
■■Homology search results ■■ -
sp_hit_id P93526
Definition sp|P93526|PHYA_SORBI Phytochrome a OS=Sorghum bicolor
Align length 90
Score (bit) 32.7
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950933|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A15, 5'
         (687 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93526|PHYA_SORBI Phytochrome a OS=Sorghum bicolor GN=PHYA PE...    33   1.9  
sp|P19862|PHYA1_MAIZE Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1     32   2.4  
sp|P47806|GLI1_MOUSE Zinc finger protein GLI1 OS=Mus musculus GN...    32   2.4  
sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondria...    32   3.2  
sp|Q50DM7|GPR56_PANTR G-protein coupled receptor 56 OS=Pan trogl...    32   4.2  
sp|A8MV65|VGLL3_HUMAN Transcription cofactor vestigial-like prot...    31   5.5  
sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens GN...    31   5.5  
sp|P06594|PHYA4_AVESA Phytochrome A type 4 OS=Avena sativa GN=PH...    31   7.1  
sp|Q50DM5|GPR56_PONPY G-protein coupled receptor 56 OS=Pongo pyg...    31   7.1  
sp|Q50DM8|GPR56_MACMU G-protein coupled receptor 56 OS=Macaca mu...    31   7.1  
sp|Q9Y653|GPR56_HUMAN G-protein coupled receptor 56 OS=Homo sapi...    31   7.1  
sp|Q50DM6|GPR56_GORGO G-protein coupled receptor 56 OS=Gorilla g...    31   7.1  
sp|Q7Z6I6|RHG30_HUMAN Rho GTPase-activating protein 30 OS=Homo s...    30   9.2  

>sp|P93526|PHYA_SORBI Phytochrome a OS=Sorghum bicolor GN=PHYA PE=2
           SV=1
          Length = 1131

 Score = 32.7 bits (73), Expect = 1.9
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
 Frame = -1

Query: 654 DHALCGRVVSSVLDFCSHSLALQQTNPLPCLANLTTENLV----EGTEPCVKPPWPGHKV 487
           D +LCG  + +      HS  LQ    +  +A+L    +V    E  EP   P  P  + 
Sbjct: 310 DISLCGSTLRA-----PHSCHLQYMENMNSIASLVMAVVVNENEEDDEP--GPEQPPQQQ 362

Query: 486 QKKRAASLFSVVCHHSLPWKTVLPSRHSIE 397
           +KKR   L  +VCHH  P     P R++ E
Sbjct: 363 KKKRLWGL--IVCHHESPRYVPFPLRYACE 390


>sp|P19862|PHYA1_MAIZE Phytochrome A OS=Zea mays GN=PHYA1 PE=3 SV=1
          Length = 1131

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = -1

Query: 654 DHALCGRVVSSVLDFCSHSLALQQTNPLPCLANLTTENLV----EGTEPCVKPPWPGHKV 487
           D +LCG  + +      HS  L+    +  +A+L    +V    E  EP  +P  P  + 
Sbjct: 310 DISLCGSTLRA-----PHSCHLKYMENMNSIASLVMAVVVNENEEDDEP--EPEQPPQQQ 362

Query: 486 QKKRAASLFSVVCHHSLPWKTVLPSRHSIE 397
           +KKR   L  +VCHH  P     P R++ E
Sbjct: 363 KKKRLWGL--IVCHHESPRYVPFPLRYACE 390


>sp|P47806|GLI1_MOUSE Zinc finger protein GLI1 OS=Mus musculus
           GN=Gli1 PE=2 SV=3
          Length = 1111

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
 Frame = -1

Query: 549 TENLVEGTE-PCVKPPWPGHKVQKKRAASLFSVVCHHSLPWKTVLPSRHS--IESIHKHC 379
           T +  EG+  P   PP    K+ KKRA S+ S +   SL  +TV+ +  S  +  I+  C
Sbjct: 59  TSSCTEGSLFPPPPPPRSSVKLTKKRALSI-SPLSDASLDLQTVIRTSPSSLVAFINSRC 117

Query: 378 LSLLCIYPHRSIGEKKPSHG 319
            S    Y H SIG   PS G
Sbjct: 118 TSPGGSYGHLSIGTMSPSLG 137


>sp|Q9UBK8|MTRR_HUMAN Methionine synthase reductase, mitochondrial
           OS=Homo sapiens GN=MTRR PE=1 SV=2
          Length = 725

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 43/168 (25%), Positives = 63/168 (37%), Gaps = 19/168 (11%)
 Frame = -1

Query: 462 FSVVCHHSLPWKTVLPSRHSIESIHKHCLSLLCIYPHRSIGEKKPSH---GRS*FLAVLF 292
           FSV+C +S      L  R  +E   +HC+ L      +  G   P H   G S  L  +F
Sbjct: 340 FSVICPNSDSEVQSLLQRLQLEDKREHCVLLKIKADTKKKGATLPQHIPAGCS--LQFIF 397

Query: 291 CFC-RLVCFPSSSFLFS*QIIYPMT*RSCLRCTEDGAAK--AEKKCCGQSARDASKRTRT 121
            +C  +   P  +FL           R+ +  T D A K   ++ C  Q A D S+  R 
Sbjct: 398 TWCLEIRAIPKKAFL-----------RALVDYTSDSAEKRRLQELCSKQGAADYSRFVRD 446

Query: 120 AAEAY--------QCRLVLLRLQNHFLQAA*KP-----SSALREGRIH 16
           A             C+  L  L  H  +   +P     SS    G++H
Sbjct: 447 ACACLLDLLLAFPSCQPPLSLLLEHLPKLQPRPYSCASSSLFHPGKLH 494


>sp|Q50DM7|GPR56_PANTR G-protein coupled receptor 56 OS=Pan
           troglodytes GN=GPR56 PE=3 SV=1
          Length = 687

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 558 NLTTENLVEGTEPCVKPP--WPGHKVQKKRAASLFSVVCHHSLPWKTVLPSRHSIESIHK 385
           N+T + +    +P +  P  W     +  R  +  S +C+H   +  ++ S   ++++HK
Sbjct: 341 NVTLQCVFWVEDPTLSSPGHWSSAGCETVRRETQTSCLCNHLTYFAVLMVSSVEVDAVHK 400

Query: 384 HCLSLL 367
           H LSLL
Sbjct: 401 HYLSLL 406


>sp|A8MV65|VGLL3_HUMAN Transcription cofactor vestigial-like protein
           3 OS=Homo sapiens GN=VGLL3 PE=2 SV=1
          Length = 326

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
 Frame = -1

Query: 585 QTNPLPCLANLTTENLVEG---TEPCVKP-PWPGHKVQKKRAASLFSVVCHHSLPWKTVL 418
           Q  P PCL  +  +  V G   T     P PWPGH + +   A   +V    S  W   L
Sbjct: 156 QPPPAPCLGGVHPDFQVTGPPGTFSAADPSPWPGHNLHQTGPAPPPAV----SESWPYPL 211

Query: 417 PSRHSIESIHKHCLSLLCIYPHRSIGEKKPSH 322
            S+ S    H H + +   +PH  +  +   H
Sbjct: 212 TSQVSPSYSHMHDVYMRHHHPHAHMHHRHRHH 243


>sp|P08151|GLI1_HUMAN Zinc finger protein GLI1 OS=Homo sapiens
           GN=GLI1 PE=1 SV=1
          Length = 1106

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = -1

Query: 549 TENLVEGTEPCVKPPWPGHKVQKKRAASLFSVVCHHSLPWKTVLPSRHS--IESIHKHCL 376
           T +  EG  P    P    K+ KKRA S+ S +   SL  +TV+ +  S  +  I+  C 
Sbjct: 59  TNSCTEG--PLFSSPRSAVKLTKKRALSI-SPLSDASLDLQTVIRTSPSSLVAFINSRCT 115

Query: 375 SLLCIYPHRSIGEKKPSHG 319
           S    Y H SIG   PS G
Sbjct: 116 SPGGSYGHLSIGTMSPSLG 134


>sp|P06594|PHYA4_AVESA Phytochrome A type 4 OS=Avena sativa GN=PHYA4
           PE=1 SV=3
          Length = 1129

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 25/88 (28%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
 Frame = -1

Query: 654 DHALCGRVVSSVLDFCSHSLALQQTNPLPCLANLTTENLVEGTEPC--VKPPWPGHKVQK 481
           D +LCG  + +      HS  LQ    +  +A+L    +V   E     +   P  + QK
Sbjct: 308 DISLCGSALRA-----PHSCHLQYMENMNSIASLVMAVVVNENEEDDEAESEQPAQQQQK 362

Query: 480 KRAASLFSVVCHHSLPWKTVLPSRHSIE 397
           K+   L  +VCHH  P     P R++ E
Sbjct: 363 KKLWGL--LVCHHESPRYVPFPLRYACE 388


>sp|Q50DM5|GPR56_PONPY G-protein coupled receptor 56 OS=Pongo
           pygmaeus GN=GPR56 PE=3 SV=1
          Length = 687

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 558 NLTTENLVEGTEPCVKPP--WPGHKVQKKRAASLFSVVCHHSLPWKTVLPSRHSIESIHK 385
           N+T + +    +P +  P  W     +  R  +  S  C+H   +  ++ S   ++++HK
Sbjct: 341 NVTLQCVFWVEDPTLSSPGHWSSAGCETVRRETQTSCFCNHLTYFAVLMVSSVEVDAVHK 400

Query: 384 HCLSLL 367
           H LSLL
Sbjct: 401 HYLSLL 406


>sp|Q50DM8|GPR56_MACMU G-protein coupled receptor 56 OS=Macaca
           mulatta GN=GPR56 PE=2 SV=1
          Length = 687

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -1

Query: 585 QTNPLPCLANLTTENLVEGTEPCVKPP--WPGHKVQKKRAASLFSVVCHHSLPWKTVLPS 412
           Q  P P   N+T + +    +P +  P  W     +  R  +  S  C+H   +  ++ S
Sbjct: 334 QHQPQP--KNVTLQCVFWVEDPTLSNPGRWSSAGCETVRRETQTSCFCNHLTYFAVLMVS 391

Query: 411 RHSIESIHKHCLSLL 367
              ++++HKH LSLL
Sbjct: 392 SVEVDAVHKHYLSLL 406
tr_hit_id Q9YZZ7
Definition tr|Q9YZZ7|Q9YZZ7_9ALPH UL25 protein OS=Gallid herpesvirus 1
Align length 87
Score (bit) 37.0
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950933|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A15, 5'
         (687 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9YZZ7|Q9YZZ7_9ALPH UL25 protein OS=Gallid herpesvirus 1 GN=U...    37   1.2  
tr|Q785G3|Q785G3_9ALPH UL25 product homolog OS=Marek's disease v...    37   1.2  
tr|Q782S0|Q782S0_9ALPH UL25 protein OS=Gallid herpesvirus 3 GN=U...    37   1.2  
tr|B3IUZ1|B3IUZ1_ARIWE Phytochrome A (Fragment) OS=Aristolochia ...    36   2.6  
tr|B3IUZ0|B3IUZ0_9MAGN Phytochrome A (Fragment) OS=Aristolochia ...    36   2.6  
tr|Q0KIX8|Q0KIX8_BOMMO Glutamate synthase OS=Bombyx mori GN=BmGO...    35   3.4  
tr|B4NRT9|B4NRT9_DROSI GD12001 OS=Drosophila simulans GN=GD12001...    35   3.4  
tr|Q67JA5|Q67JA5_SYMTH Pyruvate ferredoxin oxidoreductase gamma-...    35   4.5  
tr|Q58I79|Q58I79_BOMMO Serine protease (Serine protease-2) OS=Bo...    35   4.5  
tr|Q6MSY3|Q6MSY3_MYCMS Conserved hypothetical transmembrane prot...    34   7.7  
tr|Q2SSD2|Q2SSD2_MYCCT Membrane protein, putative OS=Mycoplasma ...    34   7.7  
tr|Q9M6H4|Q9M6H4_9MAGN Phytochrome A (Fragment) OS=Hernandia lyc...    34   10.0 
tr|B6LAB6|B6LAB6_BRAFL Putative uncharacterized protein OS=Branc...    34   10.0 
tr|Q1DNW3|Q1DNW3_COCIM Putative uncharacterized protein OS=Cocci...    34   10.0 

>tr|Q9YZZ7|Q9YZZ7_9ALPH UL25 protein OS=Gallid herpesvirus 1 GN=UL25
           PE=4 SV=1
          Length = 594

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +1

Query: 427 FPWQ-RMVTNNGKERGSSFFLHFVPGPWWLHTWFSPLY*VFCGQIGQAW*RICLLESKGM 603
           F W  R++T+ G E   +   +F+  PW LH W  P   +F G +G A  ++ +++++  
Sbjct: 4   FAWDARILTDPGPESHPADVKNFIAPPWPLHFWREP---IFSGNLGDAERQLAIVKARNS 60

Query: 604 GTEIQYTGNNSATESMIMNLPFQMLPV 684
                 T  +  T+ + + +  ++ P+
Sbjct: 61  AAIAALTSLDDRTDLIAVEVERRLRPL 87


>tr|Q785G3|Q785G3_9ALPH UL25 product homolog OS=Marek's disease
           virus serotype 2 MDV2 GN=ORF 32 PE=4 SV=1
          Length = 594

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +1

Query: 427 FPWQ-RMVTNNGKERGSSFFLHFVPGPWWLHTWFSPLY*VFCGQIGQAW*RICLLESKGM 603
           F W  R++T+ G E   +   +F+  PW LH W  P   +F G +G A  ++ +++++  
Sbjct: 4   FAWDARILTDPGPESHPADVKNFIAPPWPLHFWREP---IFSGNLGDAERQLAIVKARNS 60

Query: 604 GTEIQYTGNNSATESMIMNLPFQMLPV 684
                 T  +  T+ + + +  ++ P+
Sbjct: 61  AAIAALTSLDDRTDLIAVEVERRLRPL 87


>tr|Q782S0|Q782S0_9ALPH UL25 protein OS=Gallid herpesvirus 3 GN=UL25
           PE=4 SV=1
          Length = 594

 Score = 37.0 bits (84), Expect = 1.2
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
 Frame = +1

Query: 427 FPWQ-RMVTNNGKERGSSFFLHFVPGPWWLHTWFSPLY*VFCGQIGQAW*RICLLESKGM 603
           F W  R++T+ G E   +   +F+  PW LH W  P   +F G +G A  ++ +++++  
Sbjct: 4   FAWDARILTDPGPESHPADVKNFIAPPWPLHFWREP---IFSGNLGDAERQLAIVKARNS 60

Query: 604 GTEIQYTGNNSATESMIMNLPFQMLPV 684
                 T  +  T+ + + +  ++ P+
Sbjct: 61  AAIAALTSLDDRTDLIAVEVERRLRPL 87


>tr|B3IUZ1|B3IUZ1_ARIWE Phytochrome A (Fragment) OS=Aristolochia
           westlandii GN=phyA PE=4 SV=1
          Length = 232

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = -1

Query: 654 DHALCGRVVSSVLDFCSHSLALQQTNPLPCLANLTTENLVEGTEPCVKPPWPGHKVQKKR 475
           D  LCG  + +     SHS  LQ    +  +A+L    +V+  E    P  P  + Q KR
Sbjct: 36  DLTLCGSTLRA-----SHSCHLQYMKNMGSVASLVLAVVVKEGEEDDNPD-PNQEPQSKR 89

Query: 474 AASLFSVVCHHSLPWKTVLPSRHSIE 397
                 VVCHH+ P     P R++ E
Sbjct: 90  KRLWGLVVCHHTTPRFVPFPLRYACE 115


>tr|B3IUZ0|B3IUZ0_9MAGN Phytochrome A (Fragment) OS=Aristolochia
           saccata GN=phyA PE=4 SV=1
          Length = 232

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 27/86 (31%), Positives = 38/86 (44%)
 Frame = -1

Query: 654 DHALCGRVVSSVLDFCSHSLALQQTNPLPCLANLTTENLVEGTEPCVKPPWPGHKVQKKR 475
           D  LCG  + +     SHS  LQ    +  +A+L    +V+  E    P  P  + Q KR
Sbjct: 36  DLTLCGSTLRA-----SHSCHLQYMKNMGSVASLVLAVVVKEGEEDDNPD-PNQEPQSKR 89

Query: 474 AASLFSVVCHHSLPWKTVLPSRHSIE 397
                 VVCHH+ P     P R++ E
Sbjct: 90  KRLWGLVVCHHTTPRFVPFPLRYACE 115


>tr|Q0KIX8|Q0KIX8_BOMMO Glutamate synthase OS=Bombyx mori GN=BmGOGAT
            PE=2 SV=1
          Length = 2046

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +3

Query: 369  EGRGNVCGCFL----WSASKGGRFSMAENGDKQRKRERQLVFFAL 491
            +G GNVCG       WS   GGR+ M E    QR+    LV  A+
Sbjct: 1917 DGEGNVCGVLAVEVEWSRGAGGRWDMREVAGSQREYRADLVLLAM 1961


>tr|B4NRT9|B4NRT9_DROSI GD12001 OS=Drosophila simulans GN=GD12001
           PE=4 SV=1
          Length = 783

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 231 RLSVKRRGKRTKENILSGRSRKEQLETRICHGLVSFHQWIYEGRCREGRGNVCGC--FLW 404
           R   +RR    +++I +  +R   L  R+C G     QW++ GR R G G    C   +W
Sbjct: 141 RSGARRRRSAAEQHIAAAPARGSALHVRVCGGKAGQLQWMHHGR-RNGLGKTLQCVTLVW 199

Query: 405 SASKGG 422
           +  + G
Sbjct: 200 TLLRQG 205


>tr|Q67JA5|Q67JA5_SYMTH Pyruvate ferredoxin oxidoreductase
           gamma-delta subunit OS=Symbiobacterium thermophilum
           GN=STH3264 PE=4 SV=1
          Length = 343

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 19/42 (45%), Positives = 24/42 (57%)
 Frame = -1

Query: 231 YPMT*RSCLRCTEDGAAKAEKKCCGQSARDASKRTRTAAEAY 106
           YP T    LRC + G A+ E +  G SA + S RTR +A AY
Sbjct: 185 YPHTVPGNLRCFDRGYAEIEFQSFGPSAEEGSARTRRSAAAY 226


>tr|Q58I79|Q58I79_BOMMO Serine protease (Serine protease-2)
           OS=Bombyx mori GN=sp-2 PE=2 SV=1
          Length = 284

 Score = 35.0 bits (79), Expect = 4.5
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
 Frame = +3

Query: 315 ICHGLVSFHQWIYEGRCREGRGNVCGCFLWSASKGGRFSMAENGDKQRKRE--RQLVFFA 488
           I H  V F+  I       G  N  G + W+A  G     A   + QRKR+   Q++  A
Sbjct: 146 INHNHVGFNNNIQRINLASGSNNFAGTWAWAAGFGRTSDAASGANNQRKRQVSLQVITNA 205

Query: 489 LCARAMVASHMVQSPL 536
           +CAR    + ++ S L
Sbjct: 206 VCARTFGNTLIIGSTL 221


>tr|Q6MSY3|Q6MSY3_MYCMS Conserved hypothetical transmembrane protein
           OS=Mycoplasma mycoides subsp. mycoides SC GN=MSC_0633
           PE=4 SV=1
          Length = 750

 Score = 34.3 bits (77), Expect = 7.7
 Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
 Frame = +3

Query: 78  VVSATPDDIGRLQLQFSSVCLRHARFGRSTSSPLSQLRLPYNGG--RNARSWDRLSVKRR 251
           ++SA PD+I +L+L FS      A      +  + +L L  NG   RN+ S++ L+++  
Sbjct: 467 ILSALPDEIPQLELFFSDKATNTASLIALENKKIKELSLYTNGNSLRNSWSYNPLALRNT 526

Query: 252 G--KRTKENILSGRSRKEQLETRICHGLVSFHQWIYE 356
                   N+ +  S  +++ TRI    ++F Q  +E
Sbjct: 527 TWINTIDYNVSAQYSSHQKITTRITFNTLAFDQKDFE 563