DK950934
Clone id TST38A01NGRL0010_A16
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_A16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
TGATCCCACCCAAGAGAAGGGTGTCGTGCGAGCGAGTCTCTTGACACTGTTATAGAATGG
CAGAGCTGAGTCAGTTGAGCTTCGGCATTCTGTTGGACATCGTGGACGAGGAATGGATGC
GCGACATTCTTCCAGACGACGATGTGCCGTTTCCACCAGGTGTTGCTCCTGCCATGGATG
ACACAGAGGATCTCAACAATCAAGAACAGCCATTGGTCAGTCAAGACAAATGGAATGAGC
TTGGAGTGCATACATTACGATGAGATTGATAGGCGAAAAAGTAAAAGCCAAAGCACAACT
TCAAAGGCTTGAAAACCTTCTGAACATTTATACATCAAAGTTTGTCTGTGGGTTGAGCCG
TTTTGATGGAAGTCATTTCTTGTGTGCTTTGTATGTCAAATGCAGAAATGAAGTGCGTTC
CCTTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5RBV4
Definition sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=Pongo abelii
Align length 59
Score (bit) 35.8
E-value 0.072
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950934|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A16, 5'
(426 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=P... 36 0.072
sp|Q8R034|APC13_MOUSE Anaphase-promoting complex subunit 13 OS=M... 35 0.12
sp|Q9BS18|APC13_HUMAN Anaphase-promoting complex subunit 13 OS=H... 35 0.12
sp|Q2NKV2|APC13_BOVIN Anaphase-promoting complex subunit 13 OS=B... 35 0.12
sp|Q28IW8|APC13_XENTR Anaphase-promoting complex subunit 13 OS=X... 34 0.21
sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20 O... 32 1.0
sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial OS=... 31 1.8
sp|P06694|TNP2_ECOLX Transposase for transposon Tn21 OS=Escheric... 31 2.3
sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing fac... 30 3.0
sp|O97387|CHH5_PENMO Crustacean hyperglycemic hormones 5 OS=Pena... 30 3.1
sp|Q09HN1|MRI_CRIGR Modulator of retrovirus infection OS=Cricetu... 29 6.8
sp|A2SHS6|TRUA_METPP tRNA pseudouridine synthase A OS=Methylibiu... 29 7.0
sp|Q8N139|ABCA6_HUMAN ATP-binding cassette sub-family A member 6... 29 8.8
sp|O75562|HFS1_HUMAN Putative protein HFSE-1 OS=Homo sapiens GN=... 29 9.1
sp|P59685|CHH_LITSH Crustacean hyperglycemic hormone OS=Litopena... 29 9.1

>sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13
OS=Pongo abelii GN=ANAPC13 PE=3 SV=1
Length = 74

Score = 35.8 bits (81), Expect = 0.072
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQD-KWNELGVHTL 257
G +LD++D+ W D LP +DV P P D +D + + Q+ KW +L + L
Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELP--DPEQDNGGTTESVKEQEMKWTDLALQYL 65


>sp|Q8R034|APC13_MOUSE Anaphase-promoting complex subunit 13 OS=Mus
musculus GN=Anapc13 PE=2 SV=1
Length = 74

Score = 35.0 bits (79), Expect = 0.12
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248
G +LD++D+ W D LP +DV P P + TE + QE KW +L +
Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLSELPEPEQDNGGTTESVKEQEM------KWTDLAL 62

Query: 249 HTL 257
L
Sbjct: 63 QGL 65


>sp|Q9BS18|APC13_HUMAN Anaphase-promoting complex subunit 13 OS=Homo
sapiens GN=ANAPC13 PE=1 SV=1
Length = 74

Score = 35.0 bits (79), Expect = 0.12
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248
G +LD++D+ W D LP +DV P P + TE + QE KW +L +
Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEM------KWTDLAL 62

Query: 249 HTL 257
L
Sbjct: 63 QYL 65


>sp|Q2NKV2|APC13_BOVIN Anaphase-promoting complex subunit 13 OS=Bos
taurus GN=ANAPC13 PE=3 SV=1
Length = 74

Score = 35.0 bits (79), Expect = 0.12
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248
G +LD++D+ W D LP +DV P P + TE + QE KW +L +
Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEM------KWTDLAL 62

Query: 249 HTL 257
L
Sbjct: 63 QYL 65


>sp|Q28IW8|APC13_XENTR Anaphase-promoting complex subunit 13
OS=Xenopus tropicalis GN=anapc13 PE=3 SV=1
Length = 74

Score = 34.3 bits (77), Expect = 0.21
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248
G +LD++D+ W D LP +DV P P + TE + QE KW +L +
Sbjct: 9 GRILDLIDDAWREDKLPYEDVTIPLNELPEPEQDNGGATESVKEQEM------KWADLAL 62

Query: 249 HTL 257
L
Sbjct: 63 QYL 65


>sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20
OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1
Length = 695

Score = 32.0 bits (71), Expect = 1.0
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3

Query: 96 DIVDEEWMRDILPDDDVPFPPGVAPAM-----DDTEDLNNQEQP 212
DI D+ W D LP+ P+ P V+P DD +D N++ +P
Sbjct: 113 DIDDDIWGDDDLPETRRPWTPNVSPGFGSDDDDDNDDDNSKNEP 156


>sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial
OS=Homo sapiens GN=MRPL3 PE=1 SV=1
Length = 348

Score = 31.2 bits (69), Expect = 1.8
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = -2

Query: 221 TDQWLFLIVEILCVIHGRSNTWWKRHIVVWKNVAHPFLVHDVQQNAEAQL-TQLC 60
T WLF+ +HG+S TWW H+ +NV PF+ V +AQL ++LC
Sbjct: 32 THIWLFVRG-----LHGKSGTWWDEHLSE-ENV--PFIKQLVSDEDKAQLASKLC 78


>sp|P06694|TNP2_ECOLX Transposase for transposon Tn21 OS=Escherichia
coli GN=tnpA PE=3 SV=1
Length = 988

Score = 30.8 bits (68), Expect = 2.3
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +3

Query: 126 ILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245
IL D++PFPP + P D QP V + WNE G
Sbjct: 64 ILGVDELPFPPLLKPVAD---------QPKVGVESWNEYG 94


>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing
facilitator CRS1, chloroplastic OS=Oryza sativa subsp.
japonica GN=Os08g0360100 PE=2 SV=1
Length = 725

Score = 30.4 bits (67), Expect = 3.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = +3

Query: 102 VDEEWMRDILPDDDVPF---PPGVAPAMDDTE 188
VD + + +++PD PF PPGV PA+ D E
Sbjct: 327 VDADLLPEVVPDFKTPFRQCPPGVRPALADEE 358


>sp|O97387|CHH5_PENMO Crustacean hyperglycemic hormones 5 OS=Penaeus
monodon GN=CHH5 PE=2 SV=1
Length = 122

Score = 30.4 bits (67), Expect = 3.1
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1

Query: 192 DPLCHPWQEQHLVETAHRRLEECRASIPRPRCPTECRSSTDSALPFYNSV 43
DP C ++ L+ R ++C P+ TECRS+ FYNSV
Sbjct: 52 DPSCAGVYDRELLGGLSRLCDDCYNVFREPKVATECRSNC-----FYNSV 96


tr_hit_id A9NJR5
Definition tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 65
Score (bit) 89.7
E-value 6.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950934|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_A16, 5'
(426 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea... 90 6e-17
tr|A9SM97|A9SM97_PHYPA Predicted protein OS=Physcomitrella paten... 80 5e-14
tr|Q2HV02|Q2HV02_MEDTR Putative uncharacterized protein OS=Medic... 74 3e-12
tr|Q8L981|Q8L981_ARATH Putative uncharacterized protein (At1g731... 72 2e-11
tr|A9P9X2|A9P9X2_POPTR Putative uncharacterized protein OS=Popul... 69 1e-10
tr|B4FEF2|B4FEF2_MAIZE Putative uncharacterized protein OS=Zea m... 64 5e-09
tr|Q0D4D3|Q0D4D3_ORYSJ Os07g0633800 protein OS=Oryza sativa subs... 62 1e-08
tr|B8B4Y3|B8B4Y3_ORYSI Putative uncharacterized protein OS=Oryza... 57 3e-07
tr|A8IRN8|A8IRN8_CHLRE Predicted protein OS=Chlamydomonas reinha... 44 0.004
tr|B6L3M3|B6L3M3_BRAFL Putative uncharacterized protein OS=Branc... 42 0.012
tr|A4RUC9|A4RUC9_OSTLU Predicted protein OS=Ostreococcus lucimar... 42 0.020
tr|B7Q8J4|B7Q8J4_IXOSC Anaphase-promoting complex subunit, putat... 41 0.026
tr|B0X6E6|B0X6E6_CULQU Putative uncharacterized protein OS=Culex... 38 0.28
tr|B8C3M7|B8C3M7_THAPS Predicted protein OS=Thalassiosira pseudo... 37 0.63
tr|B7FT90|B7FT90_PHATR Predicted protein OS=Phaeodactylum tricor... 36 0.82
tr|Q7PQ30|Q7PQ30_ANOGA AGAP005216-PA OS=Anopheles gambiae GN=AGA... 36 1.1
tr|Q4SKC6|Q4SKC6_TETNG Chromosome 13 SCAF14566, whole genome sho... 35 1.8
tr|B5G2E5|B5G2E5_TAEGU Putative anaphase promoting complex subun... 35 1.8
tr|B5G2E3|B5G2E3_TAEGU Putative anaphase promoting complex subun... 35 1.8
tr|A8K3Z6|A8K3Z6_HUMAN Anaphase promoting complex subunit 13, is... 35 1.8
tr|A2YP06|A2YP06_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4
tr|B3MHX9|B3MHX9_DROAN GF13220 OS=Drosophila ananassae GN=GF1322... 35 2.4
tr|A1L2Q2|A1L2Q2_XENLA LOC100037155 protein OS=Xenopus laevis GN... 34 3.1
tr|A1L0Y3|A1L0Y3_XENTR LOC100036704 protein (Fragment) OS=Xenopu... 34 4.1
tr|B5E0Y9|B5E0Y9_DROPS GA24158 OS=Drosophila pseudoobscura pseud... 34 4.1
tr|B4NNF8|B4NNF8_DROWI GK23305 OS=Drosophila willistoni GN=GK233... 34 4.1
tr|B4LKS6|B4LKS6_DROVI GJ20108 OS=Drosophila virilis GN=GJ20108 ... 34 4.1
tr|B4J9J8|B4J9J8_DROGR GH19846 OS=Drosophila grimshawi GN=GH1984... 34 4.1
tr|B4GIV2|B4GIV2_DROPE GL17271 OS=Drosophila persimilis GN=GL172... 34 4.1
tr|B6K2Q2|B6K2Q2_SCHJP Meiotically up-regulated gene 184 protein... 34 4.1

>tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 65

Score = 89.7 bits (221), Expect = 6e-17
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = +3

Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245
+++LS G+L+DIVDEEWMRD L DDDVP PPG+AP D+ ED +E P S+DKW +L
Sbjct: 1 MAELSMGVLIDIVDEEWMRDTLDDDDVPLPPGMAPLPDEIEDAGQEELPQGSEDKWQDLA 60

Query: 246 VHTLR 260
+HT++
Sbjct: 61 LHTIK 65


>tr|A9SM97|A9SM97_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_81312 PE=4 SV=1
Length = 65

Score = 80.1 bits (196), Expect = 5e-14
Identities = 40/68 (58%), Positives = 51/68 (75%)
Frame = +3

Query: 57 MAELSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWN 236
MAEL + GILLDIVDEEW+ D LP+DDVPFP GV P D+ ++ NQEQ L +QDKW
Sbjct: 1 MAEL--FNPGILLDIVDEEWLMDKLPNDDVPFPAGVTPPADEIDEA-NQEQLLANQDKWT 57

Query: 237 ELGVHTLR 260
+LG+ T++
Sbjct: 58 DLGLRTIQ 65


>tr|Q2HV02|Q2HV02_MEDTR Putative uncharacterized protein OS=Medicago
truncatula GN=MtrDRAFT_AC149038g10v2 PE=4 SV=1
Length = 63

Score = 74.3 bits (181), Expect = 3e-12
Identities = 33/61 (54%), Positives = 46/61 (75%)
Frame = +3

Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245
+++LS GIL+DIVDE+WMRD LP DD+P PP + DDTED +NQE V++D W++L
Sbjct: 1 MAELSLGILIDIVDEDWMRDTLPQDDLPLPPTLVVRTDDTED-SNQEAQQVNKDAWHDLA 59

Query: 246 V 248
+
Sbjct: 60 L 60


>tr|Q8L981|Q8L981_ARATH Putative uncharacterized protein (At1g73177)
OS=Arabidopsis thaliana PE=4 SV=1
Length = 63

Score = 71.6 bits (174), Expect = 2e-11
Identities = 32/63 (50%), Positives = 44/63 (69%)
Frame = +3

Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245
++++S G+L+DIVDEEWMRD LPDDD+P PP +A DDTE+ NQE + W +L
Sbjct: 1 MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEE-TNQETQQADAETWRDLA 59

Query: 246 VHT 254
+ T
Sbjct: 60 LDT 62


>tr|A9P9X2|A9P9X2_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 63

Score = 68.6 bits (166), Expect = 1e-10
Identities = 31/61 (50%), Positives = 43/61 (70%)
Frame = +3

Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245
+++L+ GIL+DIVDEEWMRD LPDDD+ PP + DD ED +NQ+ V D W++L
Sbjct: 1 MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDAED-SNQDTQHVDADAWHDLA 59

Query: 246 V 248
+
Sbjct: 60 L 60


>tr|B4FEF2|B4FEF2_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 72

Score = 63.5 bits (153), Expect = 5e-09
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +3

Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED--LNNQEQPLVSQDKWNELGV 248
LS G+L+D+VDE+WMRD LP DD+P PP +A +D ED NQE D W + +
Sbjct: 10 LSLGVLIDVVDEQWMRDTLPADDIPVPPAMAVKTEDAEDPAPANQESQPAQGDVWRDFAL 69

Query: 249 HTL 257
L
Sbjct: 70 ENL 72


>tr|Q0D4D3|Q0D4D3_ORYSJ Os07g0633800 protein OS=Oryza sativa subsp.
japonica GN=Os07g0633800 PE=4 SV=1
Length = 72

Score = 62.0 bits (149), Expect = 1e-08
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Frame = +3

Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED--LNNQEQPLVSQDKWNELGV 248
LS G+L+DIVDE+WMRD LP DDVP PP +A ++ ED NQE D W + +
Sbjct: 10 LSLGVLIDIVDEQWMRDTLPADDVPVPPAMAVKTEEAEDPAPANQESQPAQGDVWRDFTL 69

Query: 249 HTL 257
L
Sbjct: 70 ENL 72


>tr|B8B4Y3|B8B4Y3_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_26995 PE=4 SV=1
Length = 75

Score = 57.4 bits (137), Expect = 3e-07
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +3

Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED 191
LS G+L+DIVDE+WMRD LP DDVP PP +A ++ ED
Sbjct: 10 LSLGVLIDIVDEQWMRDTLPADDVPVPPAMAVKTEEAED 48


>tr|A8IRN8|A8IRN8_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_170601 PE=4 SV=1
Length = 66

Score = 43.9 bits (102), Expect = 0.004
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Frame = +3

Query: 90 LLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQE--QPLVSQDKWNELGV 248
L+DIVDE W RD LP D++ P G + +D +D+ Q+ + + ++KW EL +
Sbjct: 10 LIDIVDEAWARDTLPHDNIQLPEG-SMMPEDADDVVGQDSKRDVKRKEKWTELAI 63


>tr|B6L3M3|B6L3M3_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_202667 PE=4 SV=1
Length = 81

Score = 42.4 bits (98), Expect = 0.012
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3

Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQD-KWNELGVHTL 257
G LLDIVD++W D LP DD+ P P + +D + L Q+ KW +L + L
Sbjct: 9 GRLLDIVDQDWRDDQLPMDDIDVPQMELPDPEQEQDNGGPTESLKEQEQKWTDLALQLL 67