DK950934 |
Clone id |
TST38A01NGRL0010_A16 |
Library |
TST38 |
Length |
480 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_A16. 5' end sequence. |
Accession |
DK950934 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL3859Contig1 |
Sequence |
TGATCCCACCCAAGAGAAGGGTGTCGTGCGAGCGAGTCTCTTGACACTGTTATAGAATGG CAGAGCTGAGTCAGTTGAGCTTCGGCATTCTGTTGGACATCGTGGACGAGGAATGGATGC GCGACATTCTTCCAGACGACGATGTGCCGTTTCCACCAGGTGTTGCTCCTGCCATGGATG ACACAGAGGATCTCAACAATCAAGAACAGCCATTGGTCAGTCAAGACAAATGGAATGAGC TTGGAGTGCATACATTACGATGAGATTGATAGGCGAAAAAGTAAAAGCCAAAGCACAACT TCAAAGGCTTGAAAACCTTCTGAACATTTATACATCAAAGTTTGTCTGTGGGTTGAGCCG TTTTGATGGAAGTCATTTCTTGTGTGCTTTGTATGTCAAATGCAGAAATGAAGTGCGTTC CCTTCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q5RBV4 |
Definition |
sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=Pongo abelii |
Align length |
59 |
Score (bit) |
35.8 |
E-value |
0.072 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950934|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_A16, 5' (426 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=P... 36 0.072 sp|Q8R034|APC13_MOUSE Anaphase-promoting complex subunit 13 OS=M... 35 0.12 sp|Q9BS18|APC13_HUMAN Anaphase-promoting complex subunit 13 OS=H... 35 0.12 sp|Q2NKV2|APC13_BOVIN Anaphase-promoting complex subunit 13 OS=B... 35 0.12 sp|Q28IW8|APC13_XENTR Anaphase-promoting complex subunit 13 OS=X... 34 0.21 sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20 O... 32 1.0 sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial OS=... 31 1.8 sp|P06694|TNP2_ECOLX Transposase for transposon Tn21 OS=Escheric... 31 2.3 sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing fac... 30 3.0 sp|O97387|CHH5_PENMO Crustacean hyperglycemic hormones 5 OS=Pena... 30 3.1 sp|Q09HN1|MRI_CRIGR Modulator of retrovirus infection OS=Cricetu... 29 6.8 sp|A2SHS6|TRUA_METPP tRNA pseudouridine synthase A OS=Methylibiu... 29 7.0 sp|Q8N139|ABCA6_HUMAN ATP-binding cassette sub-family A member 6... 29 8.8 sp|O75562|HFS1_HUMAN Putative protein HFSE-1 OS=Homo sapiens GN=... 29 9.1 sp|P59685|CHH_LITSH Crustacean hyperglycemic hormone OS=Litopena... 29 9.1
>sp|Q5RBV4|APC13_PONAB Anaphase-promoting complex subunit 13 OS=Pongo abelii GN=ANAPC13 PE=3 SV=1 Length = 74
Score = 35.8 bits (81), Expect = 0.072 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQD-KWNELGVHTL 257 G +LD++D+ W D LP +DV P P D +D + + Q+ KW +L + L Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELP--DPEQDNGGTTESVKEQEMKWTDLALQYL 65
>sp|Q8R034|APC13_MOUSE Anaphase-promoting complex subunit 13 OS=Mus musculus GN=Anapc13 PE=2 SV=1 Length = 74
Score = 35.0 bits (79), Expect = 0.12 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248 G +LD++D+ W D LP +DV P P + TE + QE KW +L + Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLSELPEPEQDNGGTTESVKEQEM------KWTDLAL 62
Query: 249 HTL 257 L Sbjct: 63 QGL 65
>sp|Q9BS18|APC13_HUMAN Anaphase-promoting complex subunit 13 OS=Homo sapiens GN=ANAPC13 PE=1 SV=1 Length = 74
Score = 35.0 bits (79), Expect = 0.12 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248 G +LD++D+ W D LP +DV P P + TE + QE KW +L + Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEM------KWTDLAL 62
Query: 249 HTL 257 L Sbjct: 63 QYL 65
>sp|Q2NKV2|APC13_BOVIN Anaphase-promoting complex subunit 13 OS=Bos taurus GN=ANAPC13 PE=3 SV=1 Length = 74
Score = 35.0 bits (79), Expect = 0.12 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248 G +LD++D+ W D LP +DV P P + TE + QE KW +L + Sbjct: 9 GRILDLIDDAWREDKLPYEDVAIPLNELPEPEQDNGGTTESVKEQEM------KWTDLAL 62
Query: 249 HTL 257 L Sbjct: 63 QYL 65
>sp|Q28IW8|APC13_XENTR Anaphase-promoting complex subunit 13 OS=Xenopus tropicalis GN=anapc13 PE=3 SV=1 Length = 74
Score = 34.3 bits (77), Expect = 0.21 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 5/63 (7%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDD-----TEDLNNQEQPLVSQDKWNELGV 248 G +LD++D+ W D LP +DV P P + TE + QE KW +L + Sbjct: 9 GRILDLIDDAWREDKLPYEDVTIPLNELPEPEQDNGGATESVKEQEM------KWADLAL 62
Query: 249 HTL 257 L Sbjct: 63 QYL 65
>sp|Q9FPS7|UBP20_ARATH Ubiquitin carboxyl-terminal hydrolase 20 OS=Arabidopsis thaliana GN=UBP20 PE=2 SV=1 Length = 695
Score = 32.0 bits (71), Expect = 1.0 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = +3
Query: 96 DIVDEEWMRDILPDDDVPFPPGVAPAM-----DDTEDLNNQEQP 212 DI D+ W D LP+ P+ P V+P DD +D N++ +P Sbjct: 113 DIDDDIWGDDDLPETRRPWTPNVSPGFGSDDDDDNDDDNSKNEP 156
>sp|P09001|RM03_HUMAN 39S ribosomal protein L3, mitochondrial OS=Homo sapiens GN=MRPL3 PE=1 SV=1 Length = 348
Score = 31.2 bits (69), Expect = 1.8 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Frame = -2
Query: 221 TDQWLFLIVEILCVIHGRSNTWWKRHIVVWKNVAHPFLVHDVQQNAEAQL-TQLC 60 T WLF+ +HG+S TWW H+ +NV PF+ V +AQL ++LC Sbjct: 32 THIWLFVRG-----LHGKSGTWWDEHLSE-ENV--PFIKQLVSDEDKAQLASKLC 78
>sp|P06694|TNP2_ECOLX Transposase for transposon Tn21 OS=Escherichia coli GN=tnpA PE=3 SV=1 Length = 988
Score = 30.8 bits (68), Expect = 2.3 Identities = 16/40 (40%), Positives = 20/40 (50%) Frame = +3
Query: 126 ILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245 IL D++PFPP + P D QP V + WNE G Sbjct: 64 ILGVDELPFPPLLKPVAD---------QPKVGVESWNEYG 94
>sp|Q6YYA3|CRS1_ORYSJ Chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0360100 PE=2 SV=1 Length = 725
Score = 30.4 bits (67), Expect = 3.0 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%) Frame = +3
Query: 102 VDEEWMRDILPDDDVPF---PPGVAPAMDDTE 188 VD + + +++PD PF PPGV PA+ D E Sbjct: 327 VDADLLPEVVPDFKTPFRQCPPGVRPALADEE 358
>sp|O97387|CHH5_PENMO Crustacean hyperglycemic hormones 5 OS=Penaeus monodon GN=CHH5 PE=2 SV=1 Length = 122
Score = 30.4 bits (67), Expect = 3.1 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = -1
Query: 192 DPLCHPWQEQHLVETAHRRLEECRASIPRPRCPTECRSSTDSALPFYNSV 43 DP C ++ L+ R ++C P+ TECRS+ FYNSV Sbjct: 52 DPSCAGVYDRELLGGLSRLCDDCYNVFREPKVATECRSNC-----FYNSV 96
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NJR5 |
Definition |
tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
65 |
Score (bit) |
89.7 |
E-value |
6.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950934|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_A16, 5' (426 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea... 90 6e-17 tr|A9SM97|A9SM97_PHYPA Predicted protein OS=Physcomitrella paten... 80 5e-14 tr|Q2HV02|Q2HV02_MEDTR Putative uncharacterized protein OS=Medic... 74 3e-12 tr|Q8L981|Q8L981_ARATH Putative uncharacterized protein (At1g731... 72 2e-11 tr|A9P9X2|A9P9X2_POPTR Putative uncharacterized protein OS=Popul... 69 1e-10 tr|B4FEF2|B4FEF2_MAIZE Putative uncharacterized protein OS=Zea m... 64 5e-09 tr|Q0D4D3|Q0D4D3_ORYSJ Os07g0633800 protein OS=Oryza sativa subs... 62 1e-08 tr|B8B4Y3|B8B4Y3_ORYSI Putative uncharacterized protein OS=Oryza... 57 3e-07 tr|A8IRN8|A8IRN8_CHLRE Predicted protein OS=Chlamydomonas reinha... 44 0.004 tr|B6L3M3|B6L3M3_BRAFL Putative uncharacterized protein OS=Branc... 42 0.012 tr|A4RUC9|A4RUC9_OSTLU Predicted protein OS=Ostreococcus lucimar... 42 0.020 tr|B7Q8J4|B7Q8J4_IXOSC Anaphase-promoting complex subunit, putat... 41 0.026 tr|B0X6E6|B0X6E6_CULQU Putative uncharacterized protein OS=Culex... 38 0.28 tr|B8C3M7|B8C3M7_THAPS Predicted protein OS=Thalassiosira pseudo... 37 0.63 tr|B7FT90|B7FT90_PHATR Predicted protein OS=Phaeodactylum tricor... 36 0.82 tr|Q7PQ30|Q7PQ30_ANOGA AGAP005216-PA OS=Anopheles gambiae GN=AGA... 36 1.1 tr|Q4SKC6|Q4SKC6_TETNG Chromosome 13 SCAF14566, whole genome sho... 35 1.8 tr|B5G2E5|B5G2E5_TAEGU Putative anaphase promoting complex subun... 35 1.8 tr|B5G2E3|B5G2E3_TAEGU Putative anaphase promoting complex subun... 35 1.8 tr|A8K3Z6|A8K3Z6_HUMAN Anaphase promoting complex subunit 13, is... 35 1.8 tr|A2YP06|A2YP06_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4 tr|B3MHX9|B3MHX9_DROAN GF13220 OS=Drosophila ananassae GN=GF1322... 35 2.4 tr|A1L2Q2|A1L2Q2_XENLA LOC100037155 protein OS=Xenopus laevis GN... 34 3.1 tr|A1L0Y3|A1L0Y3_XENTR LOC100036704 protein (Fragment) OS=Xenopu... 34 4.1 tr|B5E0Y9|B5E0Y9_DROPS GA24158 OS=Drosophila pseudoobscura pseud... 34 4.1 tr|B4NNF8|B4NNF8_DROWI GK23305 OS=Drosophila willistoni GN=GK233... 34 4.1 tr|B4LKS6|B4LKS6_DROVI GJ20108 OS=Drosophila virilis GN=GJ20108 ... 34 4.1 tr|B4J9J8|B4J9J8_DROGR GH19846 OS=Drosophila grimshawi GN=GH1984... 34 4.1 tr|B4GIV2|B4GIV2_DROPE GL17271 OS=Drosophila persimilis GN=GL172... 34 4.1 tr|B6K2Q2|B6K2Q2_SCHJP Meiotically up-regulated gene 184 protein... 34 4.1
>tr|A9NJR5|A9NJR5_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 65
Score = 89.7 bits (221), Expect = 6e-17 Identities = 37/65 (56%), Positives = 50/65 (76%) Frame = +3
Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245 +++LS G+L+DIVDEEWMRD L DDDVP PPG+AP D+ ED +E P S+DKW +L Sbjct: 1 MAELSMGVLIDIVDEEWMRDTLDDDDVPLPPGMAPLPDEIEDAGQEELPQGSEDKWQDLA 60
Query: 246 VHTLR 260 +HT++ Sbjct: 61 LHTIK 65
>tr|A9SM97|A9SM97_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_81312 PE=4 SV=1 Length = 65
Score = 80.1 bits (196), Expect = 5e-14 Identities = 40/68 (58%), Positives = 51/68 (75%) Frame = +3
Query: 57 MAELSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWN 236 MAEL + GILLDIVDEEW+ D LP+DDVPFP GV P D+ ++ NQEQ L +QDKW Sbjct: 1 MAEL--FNPGILLDIVDEEWLMDKLPNDDVPFPAGVTPPADEIDEA-NQEQLLANQDKWT 57
Query: 237 ELGVHTLR 260 +LG+ T++ Sbjct: 58 DLGLRTIQ 65
>tr|Q2HV02|Q2HV02_MEDTR Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC149038g10v2 PE=4 SV=1 Length = 63
Score = 74.3 bits (181), Expect = 3e-12 Identities = 33/61 (54%), Positives = 46/61 (75%) Frame = +3
Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245 +++LS GIL+DIVDE+WMRD LP DD+P PP + DDTED +NQE V++D W++L Sbjct: 1 MAELSLGILIDIVDEDWMRDTLPQDDLPLPPTLVVRTDDTED-SNQEAQQVNKDAWHDLA 59
Query: 246 V 248 + Sbjct: 60 L 60
>tr|Q8L981|Q8L981_ARATH Putative uncharacterized protein (At1g73177) OS=Arabidopsis thaliana PE=4 SV=1 Length = 63
Score = 71.6 bits (174), Expect = 2e-11 Identities = 32/63 (50%), Positives = 44/63 (69%) Frame = +3
Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245 ++++S G+L+DIVDEEWMRD LPDDD+P PP +A DDTE+ NQE + W +L Sbjct: 1 MAEVSLGMLIDIVDEEWMRDTLPDDDLPLPPVLAVKTDDTEE-TNQETQQADAETWRDLA 59
Query: 246 VHT 254 + T Sbjct: 60 LDT 62
>tr|A9P9X2|A9P9X2_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 63
Score = 68.6 bits (166), Expect = 1e-10 Identities = 31/61 (50%), Positives = 43/61 (70%) Frame = +3
Query: 66 LSQLSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQDKWNELG 245 +++L+ GIL+DIVDEEWMRD LPDDD+ PP + DD ED +NQ+ V D W++L Sbjct: 1 MAELNMGILIDIVDEEWMRDTLPDDDLALPPVMVVRTDDAED-SNQDTQHVDADAWHDLA 59
Query: 246 V 248 + Sbjct: 60 L 60
>tr|B4FEF2|B4FEF2_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 72
Score = 63.5 bits (153), Expect = 5e-09 Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +3
Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED--LNNQEQPLVSQDKWNELGV 248 LS G+L+D+VDE+WMRD LP DD+P PP +A +D ED NQE D W + + Sbjct: 10 LSLGVLIDVVDEQWMRDTLPADDIPVPPAMAVKTEDAEDPAPANQESQPAQGDVWRDFAL 69
Query: 249 HTL 257 L Sbjct: 70 ENL 72
>tr|Q0D4D3|Q0D4D3_ORYSJ Os07g0633800 protein OS=Oryza sativa subsp. japonica GN=Os07g0633800 PE=4 SV=1 Length = 72
Score = 62.0 bits (149), Expect = 1e-08 Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +3
Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED--LNNQEQPLVSQDKWNELGV 248 LS G+L+DIVDE+WMRD LP DDVP PP +A ++ ED NQE D W + + Sbjct: 10 LSLGVLIDIVDEQWMRDTLPADDVPVPPAMAVKTEEAEDPAPANQESQPAQGDVWRDFTL 69
Query: 249 HTL 257 L Sbjct: 70 ENL 72
>tr|B8B4Y3|B8B4Y3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_26995 PE=4 SV=1 Length = 75
Score = 57.4 bits (137), Expect = 3e-07 Identities = 24/39 (61%), Positives = 30/39 (76%) Frame = +3
Query: 75 LSFGILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTED 191 LS G+L+DIVDE+WMRD LP DDVP PP +A ++ ED Sbjct: 10 LSLGVLIDIVDEQWMRDTLPADDVPVPPAMAVKTEEAED 48
>tr|A8IRN8|A8IRN8_CHLRE Predicted protein OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_170601 PE=4 SV=1 Length = 66
Score = 43.9 bits (102), Expect = 0.004 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%) Frame = +3
Query: 90 LLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQE--QPLVSQDKWNELGV 248 L+DIVDE W RD LP D++ P G + +D +D+ Q+ + + ++KW EL + Sbjct: 10 LIDIVDEAWARDTLPHDNIQLPEG-SMMPEDADDVVGQDSKRDVKRKEKWTELAI 63
>tr|B6L3M3|B6L3M3_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_202667 PE=4 SV=1 Length = 81
Score = 42.4 bits (98), Expect = 0.012 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = +3
Query: 84 GILLDIVDEEWMRDILPDDDVPFPPGVAPAMDDTEDLNNQEQPLVSQD-KWNELGVHTL 257 G LLDIVD++W D LP DD+ P P + +D + L Q+ KW +L + L Sbjct: 9 GRLLDIVDQDWRDDQLPMDDIDVPQMELPDPEQEQDNGGPTESLKEQEQKWTDLALQLL 67
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