DK950956
Clone id TST38A01NGRL0010_B14
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_B14. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
ATTCTGTGTGATGACGATAGAGGCTCTGTAATGGATTGTGTTGTCATCAATATCCAAGTA
TCGTCTTCAATGTGTCAGATTATGCAAGCCGATGGTATCAAATAATCTGCAATGCTGTAG
CCCGTCTGCTTGTACCTTTCAAAAATGTGCTCCCTTTAGAGCCCTGTTGTAGCATTGGAT
GAGGTCAGCTGATAGCAAATTGAACAAAGCATTATATTATTCATTTGAGCAGTTTAAAGA
AACCGTTATTTGCCACCGGACAGCAAACAATGAAGTGCATCAGTCCTTCACTGCAGCACA
TTTCATTATTTTTTCTGGTGGCCTTGTGTGTACACATACGATGGTTATTGATGGATAATC
ATGTAAAGAAAGCACATTAATTTGTTACTTCATCATTGGTCTCAATCATTGATTGAATTC
CAGGCATCATGTAAGAACCAAGGATTCCATAACGGTGCAAGAACTTCCACTTATCCGACA
CATTATACCAAGGCTACAATATTTACTACATTGCATGAATGTGAGAGTATGTTTTGGGAA
ATTGAGATAAGCTAGAAGAGTCTTTATCTCCACGTGATTGTTGGGTGACATACTTTGCGG
CCTCCATGGGCTATACATGTGATAATGTGGATGAGGAAGTTAAGGAGCTTATGACAATGA
ATGGGGGTGAGAGCACC
■■Homology search results ■■ -
sp_hit_id Q28019
Definition sp|Q28019|LTBP2_BOVIN Latent-transforming growth factor beta-binding protein 2 OS=Bos taurus
Align length 37
Score (bit) 31.6
E-value 4.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950956|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_B14, 5'
(677 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q28019|LTBP2_BOVIN Latent-transforming growth factor beta-bin... 32 4.0
sp|A5GDG7|HEMH_GEOUR Ferrochelatase OS=Geobacter uraniireducens ... 30 9.0
sp|Q747F5|HEMH_GEOSL Ferrochelatase OS=Geobacter sulfurreducens ... 30 9.0
sp|Q6GQ76|FTSJ2_XENLA FtsJ methyltransferase domain-containing p... 30 9.0

>sp|Q28019|LTBP2_BOVIN Latent-transforming growth factor beta-binding
protein 2 OS=Bos taurus GN=LTBP2 PE=2 SV=2
Length = 1842

Score = 31.6 bits (70), Expect = 4.0
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3

Query: 561 SLSPRDCWVTYFAASMGYTCDNVDEEVKELMTMNGGE 671
S S RDC Y +++G+TC++VDE + GGE
Sbjct: 1106 SFSCRDCEAGYQPSALGHTCEDVDECEDPQSSCLGGE 1142


>sp|A5GDG7|HEMH_GEOUR Ferrochelatase OS=Geobacter uraniireducens
(strain Rf4) GN=hemH PE=3 SV=1
Length = 319

Score = 30.4 bits (67), Expect = 9.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +1

Query: 388 LHHWSQSLIEFQASCKNQGFHNGARTSTYPTHYTKATIFTTLHECESMFWE 540
+ +W + I+ A+ K +G S YP HY++AT ++++E + + E
Sbjct: 96 MRYWKPTTIDALAAIKREGISRVIALSLYP-HYSRATTGSSINELKRVLGE 145


>sp|Q747F5|HEMH_GEOSL Ferrochelatase OS=Geobacter sulfurreducens
GN=hemH PE=3 SV=1
Length = 317

Score = 30.4 bits (67), Expect = 9.0
Identities = 14/61 (22%), Positives = 33/61 (54%)
Frame = +1

Query: 388 LHHWSQSLIEFQASCKNQGFHNGARTSTYPTHYTKATIFTTLHECESMFWEIEIS*KSLY 567
+ +W S +E A+ + +G S YP HY++AT ++++E + + + + + +Y
Sbjct: 96 MRYWKPSTMEALAAIRREGISRVIALSLYP-HYSRATTGSSVNELKRVLSQSGVQFQMMY 154

Query: 568 L 570
+
Sbjct: 155 V 155


>sp|Q6GQ76|FTSJ2_XENLA FtsJ methyltransferase domain-containing
protein 2 OS=Xenopus laevis GN=ftsjd2 PE=2 SV=1
Length = 846

Score = 30.4 bits (67), Expect = 9.0
Identities = 24/81 (29%), Positives = 33/81 (40%)
Frame = +2

Query: 299 HFIIFSGGLVCTHTMVIDG*SCKESTLICYFIIGLNH*LNSRHHVRTKDSITVQELPLIR 478
HF++ GG I K+ L+C F++GL H +RT + L
Sbjct: 359 HFMMADGGFSVEGQENIQEILSKQ-LLLCQFLVGL-------HVIRTGGHFICKTFDLFT 410

Query: 479 HIIPRLQYLLHCMNVRVCFGK 541
L YLL+C RVC K
Sbjct: 411 PFSVGLIYLLYCCFERVCLFK 431


tr_hit_id Q31FI9
Definition tr|Q31FI9|Q31FI9_THICR Putative uncharacterized protein OS=Thiomicrospira crunogena (strain XCL-2)
Align length 87
Score (bit) 35.8
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK950956|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_B14, 5'
(677 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q31FI9|Q31FI9_THICR Putative uncharacterized protein OS=Thiom... 36 2.6

>tr|Q31FI9|Q31FI9_THICR Putative uncharacterized protein
OS=Thiomicrospira crunogena (strain XCL-2) GN=Tcr_1492
PE=3 SV=1
Length = 500

Score = 35.8 bits (81), Expect = 2.6
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +3

Query: 111 NAVARLLVPFKNVLPLEPCCSIG*GQLIAN*TKHYIIHLSSLKKPLFATGQQTMKCI--S 284
N V +LV K+ P+E Q+I YIIHL ++ + L G TM+ +
Sbjct: 148 NNVKEILVSSKDAEPIEKLADFSGKQIIVVSNSSYIIHLEAINQTLGRLGLPTMEIVKAD 207

Query: 285 PSLQHISLFFLVALCVHIRWLLMDNHV 365
P ++ + L+ ++ ++ ++DNH+
Sbjct: 208 PLIESEDILELINEGIY-QYTVVDNHI 233