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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950960
Clone id TST38A01NGRL0010_B18
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_B18. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
AAATAATGTTTCTCTGCCTTTAAACTTGCAAGGGGTAATGTTTTAGCAAAACTGGTATAT
GCTCATGAGGTGGTGGTGGTGGGCTTAATTTTATTGGAGGAGGTGCTTCAAATTTAGCGA
CTTACATCCCCTCAATGGTTGTCCCTCGAACCTTTATTTTAGAATACTAATCTTAGCCAT
CGATGATGGGAAATGTGGAGGTAGAGCTGAACGATCATGCGTCCACAGATTGTACAGAGT
GCAAGCATCACAAGCCCTTATCTTCGCTTCCTCCTCGTGAACAATCGTGCTTCCCTTTGT
GACTACTAGCAATGCAGGGATGCTTAACGTTGCCCAATTCATGTCTGGAAGGATGAGGTT
TACTCAGGTTGTCCTTTCATGACGTATAAGAAGAGGAGGTGGACCAATGACTCTCTCTCT
CTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAGACTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCATGCTCGAACACTACATGCCCCTCCTAC
CTCTGGGCCACGGTGCTACCGGCATTGTCTTCCTCGCCTCTCCCATCGACAATAAGAAGA
GCGGCGGAGCCCTCCTTGCCTTCAAGGCCTTCCGGCGGTCGCGTGAC
■■Homology search results ■■ -
sp_hit_id P93025
Definition sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana
Align length 42
Score (bit) 30.4
E-value 8.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950960|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_B18, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana GN=P...    30   8.3  

>sp|P93025|PHOT2_ARATH Phototropin-2 OS=Arabidopsis thaliana
           GN=PHOT2 PE=1 SV=2
          Length = 915

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 516 LEHYMPLLPLGHGATGIVFLASPIDNKKSGGALLAFKAFRRS 641
           L H+ P+ PLG G TG V L       K  G L A KA  ++
Sbjct: 574 LHHFKPIKPLGSGDTGSVHLV----ELKGTGELYAMKAMEKT 611
tr_hit_id A8T2M6
Definition tr|A8T2M6|A8T2M6_9VIBR M5C methyltransferase OS=Vibrio campbellii AND4
Align length 80
Score (bit) 35.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950960|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_B18, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8T2M6|A8T2M6_9VIBR M5C methyltransferase OS=Vibrio campbelli...    36   2.3  
tr|Q4DT43|Q4DT43_TRYCR Putative uncharacterized protein OS=Trypa...    35   3.9  
tr|Q4DTT1|Q4DTT1_TRYCR Putative uncharacterized protein OS=Trypa...    34   8.7  

>tr|A8T2M6|A8T2M6_9VIBR M5C methyltransferase OS=Vibrio campbellii
           AND4 GN=yebU PE=4 SV=1
          Length = 157

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +2

Query: 122 LHPLNGCPSNLYFRILILAIDDGKCGGRAERSCVHRLYRVQASQALIF--ASSS*TIVLP 295
           L P  G P+      + + I  G CG  A+ +CV R+Y V   +  I   ASS+  IV+P
Sbjct: 56  LGPFQGKPA-----CVRIPIGSGVCGTAAQTNCVQRVYDVHEFEGHIACDASSNSEIVVP 110

Query: 296 FVTTSN-AGMLNVAQFMSGR 352
           FV     AG+L++     GR
Sbjct: 111 FVINGRVAGVLDIDSPNIGR 130


>tr|Q4DT43|Q4DT43_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511621.240 PE=4 SV=1
          Length = 1338

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 180 SMMGNVEVELND---HASTDCTECKHHKPLSSLPPREQSCFPL*LLAMQG 320
           S  G+V+ E+ +   H S DC  C HH PL  L P   +C  L  +A  G
Sbjct: 808 SKCGSVQPEMEEALTHTSFDCRVCSHHNPLGLLRPWCPACGTLSTVAAAG 857


>tr|Q4DTT1|Q4DTT1_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053504741.130 PE=4 SV=1
          Length = 1339

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +3

Query: 180 SMMGNVEVELND---HASTDCTECKHHKPLSSLPPREQSCFPL*LLAMQG 320
           S  G+V+ E+ +   H S DC  C HH PL  L P   +C  L  +A  G
Sbjct: 808 SKCGSVQPEMVEALTHTSFDCRVCSHHNPLGLLRPWCPACGTLSTVAAAG 857