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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950972
Clone id TST38A01NGRL0010_C07
Library
Length 488
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_C07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CAAGAACTCAGCTTGATGTCAGTGCTAGATGTCTGCTATGAACGTGGATTTTGTTCAGTG
TTGCTGGACTCGCGTGGTCGTGATCCATTGGGCCTACACAATCCTCTGGGCAAGCTTGCT
GTGGAAGAGAGAGTGGTGCAGAAGGTGATTGTAGATGTATTCCCCACAGTAACTGGCCAC
AATAGAGCTGGTCCAGGCTTTGTAATTGATGGAGGTGCCTTGCCTGTAGAGCGAGTAAGG
TCAAGAATGTCAGGATCTCATGTCATTATTGAAGGCTATTTGCCAAGGTGATAGCATTAG
GATTTGTGTATTATATGCATCTTAAACTTGGTCTGCTAGCGAAGAGCTGTCATAAGAGTT
CTGCCGTTGATGATTGGTTGTTCCGGGAGAAGGTGATAATGTAATTTACTTGTATGGTTC
AGTTTATGAAGGATTTCTAACGTTGGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8CC27
Definition sp|Q8CC27|CACB2_MOUSE Voltage-dependent L-type calcium channel subunit beta-2 OS=Mus musculus
Align length 57
Score (bit) 33.1
E-value 0.56
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_C07, 5'
         (449 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CC27|CACB2_MOUSE Voltage-dependent L-type calcium channel s...    33   0.56 
sp|Q8VGC3|CACB2_RAT Voltage-dependent L-type calcium channel sub...    32   0.95 
sp|Q80XH2|IMPG2_MOUSE Interphotoreceptor matrix proteoglycan 2 O...    32   1.6  
sp|Q0VC30|DPOG2_BOVIN DNA polymerase subunit gamma-2, mitochondr...    32   1.6  
sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205 OS=Di...    30   6.1  
sp|P38811|TRA1_YEAST Transcription-associated protein 1 OS=Sacch...    29   8.0  
sp|P70628|IMPG2_RAT Interphotoreceptor matrix proteoglycan 2 OS=...    29   8.0  
sp|Q6W2J9|BCOR_HUMAN BCL-6 corepressor OS=Homo sapiens GN=BCOR P...    29   8.0  

>sp|Q8CC27|CACB2_MOUSE Voltage-dependent L-type calcium channel
           subunit beta-2 OS=Mus musculus GN=Cacnb2 PE=2 SV=1
          Length = 655

 Score = 33.1 bits (74), Expect = 0.56
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -1

Query: 215 PPSITKPGPALLWPVTVGNTSTITFCTTLSSTASLPRGLCRPNGSRPRESSNTEQNP 45
           PPS   P P L   +    +ST+    TL+S +   +G  RP+ S PR +S  E+ P
Sbjct: 463 PPSGNLPNPLLSRTLA---SSTLPLSPTLASNSQGSQGDQRPDRSAPRSASQAEEEP 516


>sp|Q8VGC3|CACB2_RAT Voltage-dependent L-type calcium channel
           subunit beta-2 OS=Rattus norvegicus GN=Cacnb2 PE=1 SV=2
          Length = 655

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = -1

Query: 215 PPSITKPGPALLWPVTVGNTSTITFCTTLSSTASLPRGLCRPNGSRPRESSNTEQNP 45
           PPS   P P L   +    TST+    TL+S +   +G  R + S PR +S  E+ P
Sbjct: 463 PPSSNLPNPLLSRTLA---TSTLPLSPTLASNSQGSQGDQRTDRSAPRSASQAEEEP 516


>sp|Q80XH2|IMPG2_MOUSE Interphotoreceptor matrix proteoglycan 2
           OS=Mus musculus GN=Impg2 PE=1 SV=1
          Length = 1243

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 194 GPALLWPVTVGNTSTITFCTTLSSTASLPRGLCRPNGSRPRESSNTE 54
           GP L +PV +G TST+T      S+AS P      + + P+ES + E
Sbjct: 179 GPELSFPVPIGETSTLTGAV---SSASYPGLASESSAASPQESISNE 222


>sp|Q0VC30|DPOG2_BOVIN DNA polymerase subunit gamma-2, mitochondrial
           OS=Bos taurus GN=POLG2 PE=2 SV=1
          Length = 485

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
 Frame = +1

Query: 22  VLDVCYERGFCSVLLDSRGRDPL--GLHNPLGKLAVEERVV------QKVIV---DVFPT 168
           ++++C +R F S       RD L  G H  LG L +E R          V+V    VFP 
Sbjct: 69  LVEICRKRRFLSGTKQQLSRDSLLNGCHPGLGPLGIELRKNLAAEWWSSVVVFREQVFPV 128

Query: 169 VTGHNRAGPGFVIDGG 216
              H   GP   +D G
Sbjct: 129 DALHREPGPSLPVDNG 144


>sp|Q54VQ0|Y6442_DICDI Uncharacterized protein DDB_G0280205
           OS=Dictyostelium discoideum GN=DDB_G0280205 PE=4 SV=1
          Length = 527

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
 Frame = -1

Query: 254 PDILDLTRSTGKAPPSITKPGPALLWPVTVGNTSTITFCTTL-------SSTASLPRGLC 96
           P    LT+S       ++ P P+ L   T   TST T  T+        SST S P G  
Sbjct: 210 PPAPTLTKSKSTPSSPLSTPTPSKLSSSTNTTTSTSTTTTSTTPTRRISSSTTSSPIGST 269

Query: 95  RPNG-SRPRESSNTEQNPRS*QTSSTDIKLSS 3
             +   RP   ++T ++  S  +SS+   LSS
Sbjct: 270 TTSALKRPSTLTSTPKSSSSSSSSSSSATLSS 301


>sp|P38811|TRA1_YEAST Transcription-associated protein 1
            OS=Saccharomyces cerevisiae GN=TRA1 PE=1 SV=1
          Length = 3744

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 212  PSITKPGPALLWPVTVGNTSTITFCTTLSST 120
            P   KP  AL + + +GN   ITFC +L +T
Sbjct: 1336 PIFAKPLRALPFTMQIGNVDAITFCLSLPNT 1366


>sp|P70628|IMPG2_RAT Interphotoreceptor matrix proteoglycan 2
           OS=Rattus norvegicus GN=Impg2 PE=2 SV=2
          Length = 1241

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 194 GPALLWPVTVGNTSTITFCTTLSSTASLPRGLCRPNGSRPRESSNTE 54
           GP L  PV +G TST+       S+AS P      + + P+ES + E
Sbjct: 179 GPELSSPVPIGETSTLAGAV---SSASYPGAASERSAASPQESISNE 222


>sp|Q6W2J9|BCOR_HUMAN BCL-6 corepressor OS=Homo sapiens GN=BCOR PE=1
           SV=1
          Length = 1755

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 163 PTVTGHNRAGPGFVIDGGALPVE 231
           PTV  H+RAG G V+ G  +P E
Sbjct: 463 PTVLVHSRAGSGLVLSGSEIPKE 485
tr_hit_id A9SGC4
Definition tr|A9SGC4|A9SGC4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 94
Score (bit) 89.0
E-value 1.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950972|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_C07, 5'
         (449 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SGC4|A9SGC4_PHYPA Predicted protein OS=Physcomitrella paten...    89   1e-16
tr|B8LR04|B8LR04_PICSI Putative uncharacterized protein OS=Picea...    82   2e-14
tr|A7PZD4|A7PZD4_VITVI Chromosome chr15 scaffold_40, whole genom...    56   1e-06
tr|A0ZBN1|A0ZBN1_NODSP Riboflavin biosynthesis protein RibD OS=N...    54   3e-06
tr|Q8Z0K9|Q8Z0K9_ANASP Riboflavin biosynthesis protein OS=Anabae...    53   7e-06
tr|Q3MD56|Q3MD56_ANAVT Diaminohydroxyphosphoribosylaminopyrimidi...    52   1e-05
tr|Q9SUB7|Q9SUB7_ARATH Putative uncharacterized protein AT4g2096...    51   3e-05
tr|Q8L8N0|Q8L8N0_ARATH Probable riboflavin biosynthesis related ...    51   3e-05
tr|Q8GWP5|Q8GWP5_ARATH Putative uncharacterized protein At4g2096...    51   3e-05
tr|B2J2B9|B2J2B9_NOSP7 Riboflavin biosynthesis protein RibD OS=N...    49   1e-04
tr|B8HYL1|B8HYL1_9CHRO Riboflavin biosynthesis protein RibD OS=C...    49   1e-04
tr|A3IXY3|A3IXY3_9CHRO Riboflavin biosynthesis protein OS=Cyanot...    48   3e-04
tr|B4B875|B4B875_9CHRO Riboflavin biosynthesis protein RibD OS=C...    45   0.001
tr|A8YK46|A8YK46_MICAE Similar to Q3MD56_ANAVT Riboflavin biosyn...    44   0.004
tr|B0JQV3|B0JQV3_MICAN Riboflavin biosynthesis protein OS=Microc...    43   0.009
tr|B7KDE3|B7KDE3_9CHRO Riboflavin biosynthesis protein RibD OS=C...    42   0.012
tr|B6TRH4|B6TRH4_MAIZE Riboflavin biosynthesis protein ribD OS=Z...    42   0.015
tr|B4FA35|B4FA35_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.015
tr|A9RRJ5|A9RRJ5_PHYPA Predicted protein (Fragment) OS=Physcomit...    41   0.034
tr|A9T9J4|A9T9J4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.059
tr|B5W6N4|B5W6N4_SPIMA Riboflavin biosynthesis protein RibD OS=A...    40   0.077
tr|Q10SM6|Q10SM6_ORYSJ Os03g0117200 protein OS=Oryza sativa subs...    39   0.100
tr|B8ALV7|B8ALV7_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.17 
tr|B0C6Z9|B0C6Z9_ACAM1 Riboflavin biosynthesis protein RibD OS=A...    38   0.29 
tr|Q0JF04|Q0JF04_ORYSJ Os04g0177400 protein OS=Oryza sativa subs...    38   0.29 
tr|B7K3F4|B7K3F4_SYNP8 Riboflavin biosynthesis protein RibD OS=S...    37   0.50 
tr|B4C2K6|B4C2K6_9CHRO Riboflavin biosynthesis protein RibD OS=C...    37   0.50 
tr|B5DRQ7|B5DRQ7_DROPS GA28568 OS=Drosophila pseudoobscura pseud...    36   0.85 
tr|B6QLP6|B6QLP6_PENMA Isoamyl alcohol oxidase, putative OS=Peni...    35   1.9  
tr|B5DMA7|B5DMA7_DROPS GA28549 OS=Drosophila pseudoobscura pseud...    35   2.5  

>tr|A9SGC4|A9SGC4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_129273 PE=4 SV=1
          Length = 393

 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 47/94 (50%), Positives = 59/94 (62%)
 Frame = +1

Query: 4   ELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHN 183
           +L+L +VL VCY+ G  SVLLDSRG    GL N LG+ A++E   QKV+V V P   G N
Sbjct: 297 DLTLENVLSVCYQLGATSVLLDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGEN 356

Query: 184 RAGPGFVIDGGALPVERVRSRMSGSHVIIEGYLP 285
           R  P F +D   + +ERV S M G  V+IEGY P
Sbjct: 357 RTEPCFRMDSDLVKLERVSSHMVGQDVVIEGYFP 390


>tr|B8LR04|B8LR04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 457

 Score = 81.6 bits (200), Expect = 2e-14
 Identities = 40/96 (41%), Positives = 61/96 (63%)
 Frame = +1

Query: 1   QELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGH 180
           ++L + SVLD+C +RG CSV +DSRG    GL N +GK A+EE  VQK+++ + P ++G+
Sbjct: 361 KKLEIDSVLDICSQRGLCSVFIDSRGLASAGLENFIGKQALEEEAVQKLVIAICPMISGN 420

Query: 181 NRAGPGFVIDGGALPVERVRSRMSGSHVIIEGYLPR 288
            R    F I    L   R+R+++S    ++EGY PR
Sbjct: 421 KRTELNFDIPPAKL--NRLRTKLSKDVAVVEGYFPR 454


>tr|A7PZD4|A7PZD4_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026839001
           PE=4 SV=1
          Length = 222

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 31/94 (32%), Positives = 53/94 (56%), Gaps = 2/94 (2%)
 Frame = +1

Query: 4   ELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHN 183
           +++L +VL+ C  +G CS+LLD RG    G    L K ++EE ++QKV+V+V P  + + 
Sbjct: 130 QINLNAVLEYCKRQGLCSILLDLRGN--FGYFEDLLKQSLEENLLQKVVVEVLPFWSTNE 187

Query: 184 RAGPGFVIDG--GALPVERVRSRMSGSHVIIEGY 279
             G    +      + ++ + SR S   V++EGY
Sbjct: 188 EEGLPLALKNLRKGIRLKNITSRNSNDSVVLEGY 221


>tr|A0ZBN1|A0ZBN1_NODSP Riboflavin biosynthesis protein RibD
           OS=Nodularia spumigena CCY 9414 GN=N9414_08315 PE=4 SV=1
          Length = 448

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = +1

Query: 22  VLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHNRAGP-- 195
           V+   Y+RGFCSVL +  G         L   A+ +  VQK++  + P + G + A    
Sbjct: 360 VMTNLYDRGFCSVLWECGGT--------LAASAIAQGAVQKILAFIAPKIIGGSHAATPV 411

Query: 196 ---GFVIDGGALPVERVRSRMSGSHVIIEGYLPR 288
              GF I   AL +ERV  R+ GS  ++EGYLP+
Sbjct: 412 GDLGFTIMTEALTLERVSWRVVGSDCLVEGYLPQ 445


>tr|Q8Z0K9|Q8Z0K9_ANASP Riboflavin biosynthesis protein OS=Anabaena
           sp. (strain PCC 7120) GN=ribD PE=4 SV=1
          Length = 396

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
 Frame = +1

Query: 19  SVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHNRAGP- 195
           +V+   Y+RGFCSVL +  G         L   A+ +  VQK++  + P + G + A   
Sbjct: 307 TVMSYLYDRGFCSVLWECGGT--------LAASAIAQGAVQKILAFIAPKIIGGSHAPTP 358

Query: 196 ----GFVIDGGALPVERVRSRMSGSHVIIEGYLP 285
               GF     AL +ERVR R+ GS  ++EGYLP
Sbjct: 359 VGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392


>tr|Q3MD56|Q3MD56_ANAVT Diaminohydroxyphosphoribosylaminopyrimidine
           deaminase / 5-amino-6-(5-phosphoribosylamino)uracil
           reductase OS=Anabaena variabilis (strain ATCC 29413 /
           PCC 7937) GN=Ava_1457 PE=4 SV=1
          Length = 396

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 5/93 (5%)
 Frame = +1

Query: 22  VLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHNRAGP-- 195
           V+   Y+RGFCSVL +  G         L   A+ +  VQK++  + P + G + A    
Sbjct: 308 VMSHLYDRGFCSVLWECGGT--------LAASAIAQGAVQKILAFIAPKIIGGSHAPTPV 359

Query: 196 ---GFVIDGGALPVERVRSRMSGSHVIIEGYLP 285
              GF     AL +ERVR R+ GS  ++EGYLP
Sbjct: 360 GDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392


>tr|Q9SUB7|Q9SUB7_ARATH Putative uncharacterized protein AT4g20960
           OS=Arabidopsis thaliana GN=T13K14.120 PE=4 SV=1
          Length = 363

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 1   QELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGH 180
           ++++L S+LD CY RG CSVLLD RG   +     L +   E++++QKVI++V P  +  
Sbjct: 272 EKINLDSILDYCYNRGLCSVLLDLRGN--VKDLEVLLRDGFEQKLLQKVIIEVLPEWSTK 329

Query: 181 NRAGPGFVIDGGALPVERVRSRMSGSHVIIEGY 279
           +      +    +  V+ ++S+  G  V++EGY
Sbjct: 330 DERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 362


>tr|Q8L8N0|Q8L8N0_ARATH Probable riboflavin biosynthesis related
           protein OS=Arabidopsis thaliana PE=2 SV=1
          Length = 426

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 1   QELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGH 180
           ++++L S+LD CY RG CSVLLD RG   +     L +   E++++QKVI++V P  +  
Sbjct: 335 EKINLDSILDYCYNRGLCSVLLDLRGN--VKDLEVLLRDGFEQKLLQKVIIEVLPEWSTK 392

Query: 181 NRAGPGFVIDGGALPVERVRSRMSGSHVIIEGY 279
           +      +    +  V+ ++S+  G  V++EGY
Sbjct: 393 DERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 425


>tr|Q8GWP5|Q8GWP5_ARATH Putative uncharacterized protein
           At4g20960/T13K14_120 (Putative uncharacterized protein
           At4g20960) OS=Arabidopsis thaliana
           GN=At4g20960/T13K14_120 PE=2 SV=1
          Length = 426

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 31/93 (33%), Positives = 54/93 (58%)
 Frame = +1

Query: 1   QELSLMSVLDVCYERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGH 180
           ++++L S+LD CY RG CSVLLD RG   +     L +   E++++QKVI++V P  +  
Sbjct: 335 EKINLDSILDYCYNRGLCSVLLDLRGN--VKDLEVLLRDGFEQKLLQKVIIEVLPEWSTK 392

Query: 181 NRAGPGFVIDGGALPVERVRSRMSGSHVIIEGY 279
           +      +    +  V+ ++S+  G  V++EGY
Sbjct: 393 DERQIASMKWLESKHVKDLQSKQLGGSVLLEGY 425


>tr|B2J2B9|B2J2B9_NOSP7 Riboflavin biosynthesis protein RibD
           OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
           GN=Npun_F0008 PE=4 SV=1
          Length = 407

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 5/86 (5%)
 Frame = +1

Query: 37  YERGFCSVLLDSRGRDPLGLHNPLGKLAVEERVVQKVIVDVFPTVTGHNRAGP-----GF 201
           YERGFCSVL +  G         L   A+ +  VQKV+  + P + G + A       GF
Sbjct: 322 YERGFCSVLWECGGT--------LAASAIAQGAVQKVLAFIAPKIIGGSIAPTPVGDLGF 373

Query: 202 VIDGGALPVERVRSRMSGSHVIIEGY 279
                AL +ERVR R+ GS  ++EGY
Sbjct: 374 TTMTEALSLERVRWRVVGSDCLVEGY 399