DK950982 |
Clone id |
TST38A01NGRL0010_C17 |
Library |
TST38 |
Length |
691 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_C17. 5' end sequence. |
Accession |
DK950982 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1711Contig1 |
Sequence |
GCAGATTCTCAGCTATGGTCTAAGGGATGTAAAACTCATCATTGTTTACAAAAAGCTAGG CCGCGGAAGATGGATGTATACACAGCAGGTAGCATATCTGACAGGCTGATTACTTATGCA AATGCAAATAAGAGGCAGGCAATTGCGAGTGGAGGGTTCCAGGATGTAACAGAACACGTT GACGATCTGCATATAGCCTCATATGAAATTGATCCAGATTTTGTCTTTGGTAGAAACGAG AGGAATCTGGAGGAGCCTGGCCTTACCAAGGAGCCTTGCGCACATGAAGAAACATCCCTT ACAGGAGCGCGGACTAGAAGAGAGCTTCTGACAGGAACTCTGCTGTCCGGCTTAGCAATG ACAGTTTCCTTTCAAACAAGAAAAACGCTTGCGGCAGTAGCACCAGTGCCAGCTGGAATG AAGGAGGCCTCCCCTGATGGAGTCAGTGCTCCCGCATCGGTAGAAAAACCTAGCGGCTCG AGAATTTATGATGCTTCCGTTCTTGGTGAACCATTTGCTGTAGGTAAAGACAAAGGACGC GTCTGGCAAAAAGTACTGGCAGCCCGTGTTGTCTATCTTGGAGAGTCTGAGAGAGTTCCA GATCCTGATGATAAGGTTCTTGAGTTAGAGATAGTCAAAACAATCAGGGACAAATGTTTT GAGCAGAAGCGCCCTGTGTCACTGGCACTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q03610 |
Definition |
sp|Q03610|YN81_CAEEL Uncharacterized protein ZC84.1 OS=Caenorhabditis elegans |
Align length |
44 |
Score (bit) |
26.9 |
E-value |
0.96 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SSB4 |
Definition |
tr|A9SSB4|A9SSB4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
116.0 |
E-value |
2.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK950982|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_C17, 5' (691 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SSB4|A9SSB4_PHYPA Predicted protein (Fragment) OS=Physcomit... 116 2e-24 tr|A9RY09|A9RY09_PHYPA Predicted protein (Fragment) OS=Physcomit... 114 6e-24 tr|Q9SIY5|Q9SIY5_ARATH Chloroplast lumen common protein family (... 107 5e-22 tr|Q0WVB8|Q0WVB8_ARATH Putative uncharacterized protein At2g4040... 107 5e-22 tr|Q9LYM7|Q9LYM7_ARATH Putative uncharacterized protein F18O21_1... 103 1e-20 tr|Q8RWG3|Q8RWG3_ARATH Putative uncharacterized protein At3g5614... 103 1e-20 tr|A5BZ40|A5BZ40_VITVI Putative uncharacterized protein OS=Vitis... 103 1e-20 tr|A3B515|A3B515_ORYSJ Putative uncharacterized protein OS=Oryza... 102 3e-20 tr|A7Q3Q9|A7Q3Q9_VITVI Chromosome chr13 scaffold_48, whole genom... 100 9e-20 tr|Q941X4|Q941X4_ORYSJ cDNA clone:001-201-E07, full insert seque... 100 1e-19 tr|B8ABM2|B8ABM2_ORYSI Putative uncharacterized protein OS=Oryza... 100 1e-19 tr|A2ZZ58|A2ZZ58_ORYSJ Putative uncharacterized protein OS=Oryza... 100 1e-19 tr|B6SLM6|B6SLM6_MAIZE Putative uncharacterized protein OS=Zea m... 90 2e-16 tr|A4LTT0|A4LTT0_BURPS Putative uncharacterized protein OS=Burkh... 36 2.0 tr|B6P254|B6P254_BRAFL Putative uncharacterized protein (Fragmen... 35 4.5 tr|Q6C5E7|Q6C5E7_YARLI YALI0E18700p OS=Yarrowia lipolytica GN=YA... 35 4.5 tr|Q0EXG4|Q0EXG4_9PROT Mechanosensitive ion channel family prote... 35 4.5 tr|B1J9X1|B1J9X1_PSEPW Putative uncharacterized protein OS=Pseud... 35 5.9 tr|Q7RNI8|Q7RNI8_PLAYO Porphobilinogen deaminase, putative OS=Pl... 35 5.9 tr|Q4UFM9|Q4UFM9_THEAN Putative uncharacterized protein OS=Theil... 35 5.9 tr|Q1YDW4|Q1YDW4_MOBAS Possible regulatory protein, MarR family ... 34 7.7 tr|B1YAL3|B1YAL3_THENV Carbamoyl-phosphate synthase, large subun... 34 7.7 tr|A1RTS0|A1RTS0_PYRIL Carbamoyl-phosphate synthase large subuni... 34 7.7 tr|A4HF65|A4HF65_LEIBR Putative uncharacterized protein OS=Leish... 34 10.0
>tr|A9SSB4|A9SSB4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_11257 PE=4 SV=1 Length = 582
Score = 116 bits (290), Expect = 2e-24 Identities = 54/72 (75%), Positives = 64/72 (88%) Frame = +1
Query: 475 GSRIYDASVLGEPFAVGKDKGRVWQKVLAARVVYLGESERVPDPDDKVLELEIVKTIRDK 654 GSR+YDA+VLGEP AVG ++ RVWQK+L ARVVYLGE+ERVPDPDDK+LEL IV+ +RD Sbjct: 2 GSRVYDATVLGEPVAVGGERNRVWQKLLQARVVYLGEAERVPDPDDKILELGIVRKLRDA 61
Query: 655 CFEQKRPVSLAL 690 CFEQ RP+SLAL Sbjct: 62 CFEQARPMSLAL 73
>tr|A9RY09|A9RY09_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_20837 PE=4 SV=1 Length = 576
Score = 114 bits (285), Expect = 6e-24 Identities = 53/71 (74%), Positives = 63/71 (88%) Frame = +1
Query: 478 SRIYDASVLGEPFAVGKDKGRVWQKVLAARVVYLGESERVPDPDDKVLELEIVKTIRDKC 657 SR+YDA+VLGEP AVG ++ RVWQK+L ARVVYLGE+ERVPDPDDK+LE+ IV+ +RD C Sbjct: 1 SRVYDATVLGEPVAVGGERSRVWQKLLQARVVYLGEAERVPDPDDKILEMGIVRKLRDAC 60
Query: 658 FEQKRPVSLAL 690 FEQ RPVSLAL Sbjct: 61 FEQARPVSLAL 71
>tr|Q9SIY5|Q9SIY5_ARATH Chloroplast lumen common protein family (At2g40400/T3G21.17) OS=Arabidopsis thaliana GN=At2g40400 PE=2 SV=1 Length = 735
Score = 107 bits (268), Expect = 5e-22 Identities = 53/80 (66%), Positives = 63/80 (78%) Frame = +1
Query: 451 PASVEKPSGSRIYDASVLGEPFAVGKDKGRVWQKVLAARVVYLGESERVPDPDDKVLELE 630 P E+ SRIYDASVLGEP AVGKDK RVW+K+L AR+VYLGE+E+VP DDKVLELE Sbjct: 113 PVEKEEAITSRIYDASVLGEPMAVGKDKKRVWEKLLNARIVYLGEAEQVPTRDDKVLELE 172
Query: 631 IVKTIRDKCFEQKRPVSLAL 690 IV+ +R +C E R +SLAL Sbjct: 173 IVRNLRKRCIESDRQLSLAL 192
>tr|Q0WVB8|Q0WVB8_ARATH Putative uncharacterized protein At2g40400 OS=Arabidopsis thaliana GN=At2g40400 PE=2 SV=1 Length = 735
Score = 107 bits (268), Expect = 5e-22 Identities = 53/80 (66%), Positives = 63/80 (78%) Frame = +1
Query: 451 PASVEKPSGSRIYDASVLGEPFAVGKDKGRVWQKVLAARVVYLGESERVPDPDDKVLELE 630 P E+ SRIYDASVLGEP AVGKDK RVW+K+L AR+VYLGE+E+VP DDKVLELE Sbjct: 113 PVEKEEAITSRIYDASVLGEPMAVGKDKKRVWEKLLNARIVYLGEAEQVPTRDDKVLELE 172
Query: 631 IVKTIRDKCFEQKRPVSLAL 690 IV+ +R +C E R +SLAL Sbjct: 173 IVRNLRKRCIESDRQLSLAL 192
>tr|Q9LYM7|Q9LYM7_ARATH Putative uncharacterized protein F18O21_100 OS=Arabidopsis thaliana GN=F18O21_100 PE=4 SV=1 Length = 755
Score = 103 bits (257), Expect = 1e-20 Identities = 53/100 (53%), Positives = 70/100 (70%) Frame = +1
Query: 391 AAVAPVPAGMKEASPDGVSAPASVEKPSGSRIYDASVLGEPFAVGKDKGRVWQKVLAARV 570 AA P PA + P P + E+ SRIYDA+ +GEP A+GKDK +VW+K+L ARV Sbjct: 106 AAPPPPPATTTPSPPP----PVNKEETITSRIYDATAIGEPMAMGKDKKKVWEKLLNARV 161
Query: 571 VYLGESERVPDPDDKVLELEIVKTIRDKCFEQKRPVSLAL 690 VYLGE+E+VP DDK LELEIV+ +R +C E +R +S+AL Sbjct: 162 VYLGEAEQVPTKDDKELELEIVRNLRKRCVESERQISVAL 201
>tr|Q8RWG3|Q8RWG3_ARATH Putative uncharacterized protein At3g56140 (At3g56140) OS=Arabidopsis thaliana GN=At3g56140 PE=2 SV=1 Length = 745
Score = 103 bits (257), Expect = 1e-20 Identities = 53/100 (53%), Positives = 70/100 (70%) Frame = +1
Query: 391 AAVAPVPAGMKEASPDGVSAPASVEKPSGSRIYDASVLGEPFAVGKDKGRVWQKVLAARV 570 AA P PA + P P + E+ SRIYDA+ +GEP A+GKDK +VW+K+L ARV Sbjct: 106 AAPPPPPATTTPSPPP----PVNKEETITSRIYDATAIGEPMAMGKDKKKVWEKLLNARV 161
Query: 571 VYLGESERVPDPDDKVLELEIVKTIRDKCFEQKRPVSLAL 690 VYLGE+E+VP DDK LELEIV+ +R +C E +R +S+AL Sbjct: 162 VYLGEAEQVPTKDDKELELEIVRNLRKRCVESERQISVAL 201
>tr|A5BZ40|A5BZ40_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028159 PE=4 SV=1 Length = 749
Score = 103 bits (256), Expect = 1e-20 Identities = 55/106 (51%), Positives = 73/106 (68%), Gaps = 6/106 (5%) Frame = +1
Query: 391 AAVAPVPAGMKEASPDGVSA--PASVEKPSG----SRIYDASVLGEPFAVGKDKGRVWQK 552 + VA G + P S PA+ EK SRIYDA+V+GEP A+GKDK +VW+K Sbjct: 101 SVVARAEEGTEAVMPAAASGTVPAAAEKKMEEAIVSRIYDATVIGEPMALGKDKRKVWEK 160
Query: 553 VLAARVVYLGESERVPDPDDKVLELEIVKTIRDKCFEQKRPVSLAL 690 ++ AR+VYLGE+E+VP DD+ LELEIVK +R +C E +RP+SLAL Sbjct: 161 LMNARIVYLGEAEQVPIRDDRELELEIVKKLRKRCAENERPLSLAL 206
>tr|A3B515|A3B515_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_018137 PE=4 SV=1 Length = 1263
Score = 102 bits (253), Expect = 3e-20 Identities = 57/115 (49%), Positives = 79/115 (68%), Gaps = 15/115 (13%) Frame = +1
Query: 391 AAVAPVPAGMK--EASPDGVSAPA------------SVEKPSGSRIYDASVLGEPFAVGK 528 A + P+P+ EA P S+P+ V++ + SR+YDA+V+GEP AVGK Sbjct: 581 AILRPLPSSAADGEAPPTDSSSPSPPSAEEAGAVVEEVDESALSRVYDATVIGEPEAVGK 640
Query: 529 D-KGRVWQKVLAARVVYLGESERVPDPDDKVLELEIVKTIRDKCFEQKRPVSLAL 690 D +GRVW+K+ AARVVYLGE+E VPDPDD+VLELEI+K + +C E +R V++AL Sbjct: 641 DARGRVWEKLTAARVVYLGEAELVPDPDDRVLELEIMKGLATRCAEAERGVAVAL 695
>tr|A7Q3Q9|A7Q3Q9_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029379001 PE=4 SV=1 Length = 620
Score = 100 bits (249), Expect = 9e-20 Identities = 47/77 (61%), Positives = 64/77 (83%) Frame = +1
Query: 460 VEKPSGSRIYDASVLGEPFAVGKDKGRVWQKVLAARVVYLGESERVPDPDDKVLELEIVK 639 +E+ SRIYDA+V+GEP A+GKDK +VW+K++ AR+VYLGE+E+VP DD+ LELEIVK Sbjct: 1 MEEAIVSRIYDATVIGEPMALGKDKRKVWEKLMNARIVYLGEAEQVPIRDDRELELEIVK 60
Query: 640 TIRDKCFEQKRPVSLAL 690 +R +C E +RP+SLAL Sbjct: 61 KLRKRCAENERPLSLAL 77
>tr|Q941X4|Q941X4_ORYSJ cDNA clone:001-201-E07, full insert sequence OS=Oryza sativa subsp. japonica GN=B1088C09.2 PE=2 SV=1 Length = 723
Score = 99.8 bits (247), Expect = 1e-19 Identities = 58/107 (54%), Positives = 75/107 (70%), Gaps = 4/107 (3%) Frame = +1
Query: 382 KTLAAVAPVPAGMKEASPDGVSAPASVEKPSG---SRIYDASVLGEPFAVGKD-KGRVWQ 549 K A+ AP PA A+P AP S +P SR+YDA+V+GEP AVGKD + RVW+ Sbjct: 76 KQAASPAPGPA----AAP----APTSAGEPEAEALSRVYDATVIGEPQAVGKDARRRVWE 127
Query: 550 KVLAARVVYLGESERVPDPDDKVLELEIVKTIRDKCFEQKRPVSLAL 690 K++AARVVYLGE+E VPD DD+VLELE+V+ + +C E R +SLAL Sbjct: 128 KLMAARVVYLGEAELVPDRDDRVLELEVVRKLAARCAEAGRSISLAL 174
|