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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK950993
Clone id TST38A01NGRL0010_D06
Library
Length 654
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_D06. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CGCGAGAGAGCGAGAGCGCCCACATAAATTCCCATCACCAATAGCTGCTCCTGCCTCTCT
CGCCTTCTTCAGTTGCGAGCTTTACACGGAGCTTTCATGGCTCTCTCAAGACTATGTATG
ATGTCGTCTGCTGTTTCCCCAATGGACTCCAGCTTCTTCAGGCCGGTGGAGCGGAGCGAG
CTGCATGTTGGGTCCACCCTTTTACCCCTCACAGCGGTTCTAGAGACGGTAATGAATGAG
CCCACATTGATAGAGCACGCAGATATCTCTGAGAAGAAGAAGGCAGCTCCGCATTGGCTG
TCCCCCAATTACATCGATTTGCATATGAGGAGTGCAAGATTAATGAGCTGTGAGGCAACG
AGCGCACTACATCGCCACTTTGCGCAGCTGAGAGAGCAGAAGGCAAGAGGGCAGGATGAA
TCAGTGGCGATGGCGGTCTCTGCGCCGATGGAGAGCTGCGAGGGTCTGATGAGGGATGAA
TGGAATATGATGATGATGCTTGCAGACAACCGGAGCTTCTTGGAGGAGTCCTTCTGCTAG
TAGCCCTTCTGTGGGGGGAACTTTTTGTGCTCTTATTACTGTAGAGCTTCTTCTTCTTGT
TCACTTGTACCTATGCAGTCCACAAGTTACACAATTCCTGCTTTTTCTTGCTGT
■■Homology search results ■■ -
sp_hit_id Q9WVL6
Definition sp|Q9WVL6|EXTL3_MOUSE Exostosin-like 3 OS=Mus musculus
Align length 92
Score (bit) 32.7
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950993|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D06, 5'
         (654 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WVL6|EXTL3_MOUSE Exostosin-like 3 OS=Mus musculus GN=Extl3 ...    33   1.7  
sp|Q82E91|SYW2_STRAW Tryptophanyl-tRNA synthetase 2 OS=Streptomy...    32   2.9  
sp|Q99HR5|DPOL_HBVF4 Protein P OS=Hepatitis B virus genotype F2 ...    31   6.5  
sp|P32477|GSH1_YEAST Glutamate--cysteine ligase OS=Saccharomyces...    30   8.5  

>sp|Q9WVL6|EXTL3_MOUSE Exostosin-like 3 OS=Mus musculus GN=Extl3
           PE=2 SV=1
          Length = 918

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 23/92 (25%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
 Frame = +1

Query: 127 SAVSPMDSSFFRPVERSELHV--GSTLLPLTAVLETVMNEPTLIEHADISEKKKAAPHWL 300
           S + P+    F+   R+ ++V   + +  L  VL   M EPT++  AD+ ++  + PHW 
Sbjct: 208 SYLDPLVKQAFQATVRANVYVTENAAIACLYVVLVGEMQEPTVLRPADLEKQLFSLPHWR 267

Query: 301 SP--NYIDLHM-RSARLMSCEATSALHRHFAQ 387
           +   N++ +++ R +   +     +  RH AQ
Sbjct: 268 TDGHNHVIINLSRKSDTQNLLYNVSTGRHVAQ 299


>sp|Q82E91|SYW2_STRAW Tryptophanyl-tRNA synthetase 2 OS=Streptomyces
           avermitilis GN=trpS2 PE=3 SV=1
          Length = 331

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +1

Query: 307 NYIDLHMRSARLMSCEATSALHRHFAQLREQKARGQDESVAMAVS 441
           +++D H R + LM C AT    R   Q RE+ AR Q    ++ +S
Sbjct: 82  SHVDEHARLSYLMECVATDGEMRRMIQYREKAAREQQRGGSVRLS 126


>sp|Q99HR5|DPOL_HBVF4 Protein P OS=Hepatitis B virus genotype F2
           (isolate Argentina/sa16/2000) GN=P PE=3 SV=1
          Length = 843

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 289 PHWLSPNYIDLHMRSARLMSCE 354
           PHWL+P++ D+H+    +  CE
Sbjct: 72  PHWLTPSFPDIHLHQDLISKCE 93


>sp|P32477|GSH1_YEAST Glutamate--cysteine ligase OS=Saccharomyces
           cerevisiae GN=GSH1 PE=1 SV=1
          Length = 678

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +1

Query: 148 SSFFRPVERSELHVGSTLLPLTAVLETVMNEPTLIEHADISEKKKAAPH--WLSPNYIDL 321
           S + R   ++ LHVGS  +PLT  +   M  P  I   D    K AA    +L    I+ 
Sbjct: 134 SEYARQDSKNNLHVGSRSVPLTLTVFPRMGCPDFINIKDPWNHKNAASRSLFLPDEVINR 193

Query: 322 HMRSARL 342
           H+R   L
Sbjct: 194 HVRFPNL 200
tr_hit_id A4RHL6
Definition tr|A4RHL6|A4RHL6_MAGGR Putative uncharacterized protein OS=Magnaporthe grisea
Align length 91
Score (bit) 35.8
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK950993|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D06, 5'
         (654 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4RHL6|A4RHL6_MAGGR Putative uncharacterized protein OS=Magna...    36   2.4  
tr|Q4RSW6|Q4RSW6_TETNG Chromosome 12 SCAF14999, whole genome sho...    35   4.0  
tr|Q1YJ77|Q1YJ77_MOBAS Putative uncharacterized protein OS=Manga...    34   6.8  
tr|Q7ULY0|Q7ULY0_RHOBA Putative uncharacterized protein OS=Rhodo...    34   6.9  

>tr|A4RHL6|A4RHL6_MAGGR Putative uncharacterized protein
           OS=Magnaporthe grisea GN=MGG_12338 PE=4 SV=1
          Length = 701

 Score = 35.8 bits (81), Expect = 2.4
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
 Frame = +1

Query: 256 HADISEKKKAAPHWLSPNYI------------DLHMRSARLMSCEATSALHRHFAQLR-E 396
           + + SE +   P W+SPNY+            D+    A     +    LH H  ++R  
Sbjct: 206 YKETSEGRSKVPDWVSPNYLRYYVLVHDEDNGDISQSMALFEQMKRNFGLHCHLLRIRGA 265

Query: 397 QKARGQDESVAMAVS---APMESCEGLMRDE 480
           Q A   D+S+A+  S   AP E    L R E
Sbjct: 266 QSAETDDDSIALPRSEWLAPGEELAELQRSE 296


>tr|Q4RSW6|Q4RSW6_TETNG Chromosome 12 SCAF14999, whole genome
           shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00029517001 PE=4 SV=1
          Length = 1192

 Score = 35.0 bits (79), Expect = 4.0
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
 Frame = +1

Query: 289 PHWLSPNYI-----DLHMRSARLMSCEATSALHRHFAQLREQKARGQDESVAMAVSAPME 453
           P W S  YI     D    +A+ + C A  A  RH + +R   +   + ++ +A  AP +
Sbjct: 491 PSWTSFIYIFSECQDWLSVAAKRLCCRAGLAYCRHLSTVRTHLSALVNHTI-VAPDAPSD 549

Query: 454 SCEGLMRDEWNMMMMLADNRSFLEESFC**PFCGG 558
           +C+GL  D W     L D  ++ EE      + GG
Sbjct: 550 ACKGLTADVW--QTFLRDGSTYEEEELLRLVYFGG 582


>tr|Q1YJ77|Q1YJ77_MOBAS Putative uncharacterized protein
           OS=Manganese-oxidizing bacterium (strain SI85-9A1)
           GN=SI859A1_01242 PE=4 SV=1
          Length = 537

 Score = 34.3 bits (77), Expect = 6.8
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -2

Query: 242 GSFITVSRTAVRGKRVDPTCSSLRSTGLKKLESIGETADDIIHSLERAMKAP 87
           GS + V   AV G+ + PT  +   T +KK+++ GE A   + + E+  + P
Sbjct: 60  GSLVAVPADAVIGQALAPTADATSETAVKKIDASGEAAQSELGASEKLAEPP 111


>tr|Q7ULY0|Q7ULY0_RHOBA Putative uncharacterized protein
            OS=Rhodopirellula baltica GN=RB9201 PE=4 SV=1
          Length = 2046

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
 Frame = +1

Query: 160  RPVERSELHVGSTLLPLTAVLETVMNEPTLIEHADISE--KKKAAPHWLSPNYIDLHMRS 333
            +P  RS+ HV  T+  L        ++PT  EH +  E    + A HWLS         S
Sbjct: 1671 KPENRSKAHVSPTVAMLLYGRSFYKDQPTAPEHKEAVEYWTNQLAEHWLS--------LS 1722

Query: 334  ARLMSCEATSALHRHFAQLREQK 402
            +R+    A  ALHR   +L E K
Sbjct: 1723 SRMSQGHAAIALHR-LGRLNEAK 1744