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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951002
Clone id TST38A01NGRL0010_D16
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_D16. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GCTACCTTGTCACATGGAGTTAATATCATACTTTTTTTTTTTTTTTCTTTCTCTGTTCCC
CTTCTTCACTCAGTAAGGATAGAGAAATAAAGGATAAATAAATAGATTTGATTGATTACC
AGCCTCGCTTCAGTTTGTAGGAACTTACATTCAGCGATCGTCGCTAAATACGTACTATCT
GATGCTGATTTTGACAAATAGTTTCACATCAATTGATTGAAACGAGAGCTATTTATATAT
ACCATACCATTTCAAAAACAGGCAGAGAATCTTTTCGACACTTAACTTAAATATATTTGT
CAAAATAGATAGATAAGATAGAGAAAAAATATCTATCTATTAAATTAAGGAGAAGTAATG
AATCTAGAAATAATCACACAACTCGTCGTACTCACACTTGTAGCTGCATCGGGACCGTTA
GTAATTGCACTATTGGCTATCCGTAAAGGTAATTTATGAGATTGTTCCGCAATTAATTTT
GTATTTTACAGGGATTCATTCAATTCATAAGAAATGGGAAAGGGGGGGGGGGGGAGGGGG
CTCCCTCTATACCAATGCAGATATGTTGATTTGTGCAAGTCTCAACAAACATTGTGCAAT
TAATCTCTCTATTTACATC
■■Homology search results ■■ -
sp_hit_id Q85FN5
Definition sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12 OS=Adiantum capillus-veneris
Align length 33
Score (bit) 62.4
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951002|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D16, 5'
         (569 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf...    62   2e-09
sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf...    54   7e-07
sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf...    53   1e-06
sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf...    53   1e-06
sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf...    53   1e-06
sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf...    51   5e-06
sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf...    50   6e-06
sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf...    49   2e-05
sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf...    49   2e-05
sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf...    49   2e-05
sp|Q8M9Z7|YCF12_CHAGL Photosystem II reaction center protein ycf...    48   3e-05
sp|Q32RW9|YCF12_STAPU Photosystem II reaction center protein ycf...    48   4e-05
sp|Q19V96|YCF12_CHLAT Photosystem II reaction center protein ycf...    46   1e-04
sp|B2Y1W3|YCF12_WELMI Photosystem II reaction center protein ycf...    46   1e-04
sp|Q9MS72|YCF12_LEPBU Photosystem II reaction center protein ycf...    46   1e-04
sp|Q8WI31|YCF12_PSINU Photosystem II reaction center protein ycf...    45   2e-04
sp|B0YPM6|YCF12_ANEMR Photosystem II reaction center protein ycf...    45   2e-04
sp|Q9MS66|YCF12_EUGMU Photosystem II reaction center protein ycf...    44   7e-04
sp|P56328|YCF12_CHLVU Photosystem II reaction center protein ycf...    43   0.001
sp|Q1KVW3|YCF12_SCEOB Photosystem II reaction center protein ycf...    42   0.002
sp|P48256|YCF12_CYAPA Photosystem II reaction center protein ycf...    42   0.002
sp|Q1ACL9|YCF12_CHAVU Photosystem II reaction center protein ycf...    42   0.002
sp|Q9MS60|YCF12_EUGSA Photosystem II reaction center protein ycf...    42   0.003
sp|Q9MS63|YCF12_EUGMY Photosystem II reaction center protein ycf...    42   0.003
sp|Q8DJI1|YCF12_THEEB Photosystem II reaction center protein ycf...    41   0.005
sp|Q9MUS3|YCF12_MESVI Photosystem II reaction center protein ycf...    41   0.005
sp|Q20EY4|YCF12_OLTVI Photosystem II reaction center protein ycf...    40   0.006
sp|P31559|YCF12_EUGGR Photosystem II reaction center protein ycf...    40   0.006
sp|Q9MS69|YCF12_EUGDE Photosystem II reaction center protein ycf...    40   0.008
sp|A6MVU9|YCF12_RHDSA Photosystem II reaction center protein ycf...    39   0.014

>sp|Q85FN5|YCF12_ADICA Photosystem II reaction center protein ycf12
           OS=Adiantum capillus-veneris GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 62.4 bits (150), Expect = 2e-09
 Identities = 33/33 (100%), Positives = 33/33 (100%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL
Sbjct: 1   MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 33


>sp|A6H5F0|YCF12_CYCTA Photosystem II reaction center protein ycf12
           OS=Cycas taitungensis GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 53.5 bits (127), Expect = 7e-07
 Identities = 25/33 (75%), Positives = 29/33 (87%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLE++ QL VLTL+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEVLAQLTVLTLIVISGPLVIALLAVRKGNL 33


>sp|P31560|YCF12_MARPO Photosystem II reaction center protein ycf12
           OS=Marchantia polymorpha GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 26/33 (78%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLE+I QL VL L+ ASGPLVIALLA RKGNL
Sbjct: 1   MNLEVIAQLTVLALIVASGPLVIALLAARKGNL 33


>sp|Q85AJ6|YCF12_ANTFO Photosystem II reaction center protein ycf12
           OS=Anthoceros formosae GN=ycf12 PE=2 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 27/33 (81%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEII QL VL L+ ASGPLVIALLA RKGNL
Sbjct: 1   MNLEIIAQLTVLALIIASGPLVIALLAARKGNL 33


>sp|A2T316|YCF12_ANGEV Photosystem II reaction center protein ycf12
           OS=Angiopteris evecta GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-06
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>sp|P61051|YCF12_PHYPA Photosystem II reaction center protein ycf12
           OS=Physcomitrella patens GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 50.8 bits (120), Expect = 5e-06
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLE+I QL+ L L+  SGPLVIALLA RKGNL
Sbjct: 1   MNLEVIAQLIALALIVGSGPLVIALLAARKGNL 33


>sp|Q32RP1|YCF12_ZYGCR Photosystem II reaction center protein ycf12
           OS=Zygnema circumcarinatum GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 50.4 bits (119), Expect = 6e-06
 Identities = 23/33 (69%), Positives = 27/33 (81%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLE++ QL VL L+  SGPLVI LLA+RKGNL
Sbjct: 1   MNLEVVAQLTVLALIVVSGPLVIGLLALRKGNL 33


>sp|P41600|YCF12_PINTH Photosystem II reaction center protein ycf12
           OS=Pinus thunbergii GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           M+LE+I QL VLTL+  SGPLVI L AIRKGNL
Sbjct: 1   MDLEVIAQLTVLTLMVVSGPLVIVLSAIRKGNL 33


>sp|A4QM02|YCF12_PINKO Photosystem II reaction center protein ycf12
           OS=Pinus koraiensis GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/33 (72%), Positives = 27/33 (81%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           M+LE+I QL VLTL+  SGPLVI L AIRKGNL
Sbjct: 1   MDLEVIAQLTVLTLMVVSGPLVIVLSAIRKGNL 33


>sp|Q5SCX7|YCF12_HUPLU Photosystem II reaction center protein ycf12
           OS=Huperzia lucidula GN=ycf12 PE=3 SV=1
          Length = 33

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 24/33 (72%), Positives = 26/33 (78%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLE+I QL VL L+  SGPLVIAL A RKGNL
Sbjct: 1   MNLEVIAQLTVLALIVISGPLVIALSAARKGNL 33
tr_hit_id B3U0E1
Definition tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi
Align length 33
Score (bit) 52.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951002|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_D16, 5'
         (569 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1         53   1e-05
tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1          53   1e-05
tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1    53   1e-05
tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1        53   1e-05
tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1      53   1e-05
tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1       53   1e-05
tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1     53   1e-05
tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1     53   1e-05
tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1        53   1e-05
tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1        53   1e-05
tr|B3U077|B3U077_ANGEV Ycf12 OS=Angiopteris evecta PE=4 SV=1           53   1e-05
tr|B3U073|B3U073_9FILI Ycf12 OS=Marattia purpurascens PE=4 SV=1        53   1e-05
tr|B3U053|B3U053_9FILI Ycf12 OS=Marattia smithii PE=4 SV=1             53   1e-05
tr|B3U023|B3U023_9FILI Ycf12 OS=Marattia kaulfussii PE=4 SV=1          53   1e-05
tr|B3U020|B3U020_9FILI Ycf12 OS=Marattia laevis PE=4 SV=1              53   1e-05
tr|B3U016|B3U016_9FILI Ycf12 OS=Christensenia aesculifolia PE=4 ...    53   1e-05
tr|B3U014|B3U014_9FILI Ycf12 OS=Danaea wendlandii PE=4 SV=1            53   1e-05
tr|B3U008|B3U008_9FILI Ycf12 OS=Danaea nodosa PE=4 SV=1                53   1e-05
tr|B3U006|B3U006_9FILI Ycf12 OS=Danaea leprieurii PE=4 SV=1            53   1e-05
tr|B3U004|B3U004_9FILI Ycf12 OS=Danaea elliptica PE=4 SV=1             53   1e-05
tr|B2BWV0|B2BWV0_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    53   1e-05
tr|B2BWR0|B2BWR0_9FILI Hypothetical chloroplast RF12 OS=Abrodict...    53   1e-05
tr|B2BWU4|B2BWU4_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    52   2e-05
tr|B2BWU2|B2BWU2_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    52   2e-05
tr|B2BWT6|B2BWT6_9FILI Hypothetical chloroplast RF12 OS=Hymenoph...    52   2e-05
tr|B2BWV6|B2BWV6_9FILI Hypothetical chloroplast RF12 OS=Polyphle...    52   3e-05
tr|B3U067|B3U067_9FILI Ycf12 OS=Marattia oreades PE=4 SV=1             51   5e-05
tr|B3U065|B3U065_9FILI Ycf12 OS=Marattia howeana PE=4 SV=1             51   5e-05
tr|B2BWS8|B2BWS8_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    51   5e-05
tr|B2BWS4|B2BWS4_9FILI Hypothetical chloroplast RF12 OS=Crepidom...    51   5e-05

>tr|B3U0E1|B3U0E1_9FILI Ycf12 OS=Archangiopteris itoi PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D9|B3U0D9_9FILI Ycf12 OS=Angiopteris smithii PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D5|B3U0D5_9FILI Ycf12 OS=Angiopteris caudatiformis PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D3|B3U0D3_9FILI Ycf12 OS=Angiopteris sp. China PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0D1|B3U0D1_9FILI Ycf12 OS=Angiopteris durvilleana PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0C7|B3U0C7_9FILI Ycf12 OS=Angiopteris boninensis PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B9|B3U0B9_9FILI Ycf12 OS=Angiopteris angustifolia PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B5|B3U0B5_ANGLY Ycf12 OS=Angiopteris lygodiifolia PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B3|B3U0B3_9FILI Ycf12 OS=Angiopteris hypoleuca PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33


>tr|B3U0B1|B3U0B1_9FILI Ycf12 OS=Angiopteris fokiensis PE=4 SV=1
          Length = 33

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +2

Query: 308 MNLEIITQLVVLTLVAASGPLVIALLAIRKGNL 406
           MNLEI+ QL VL L+  SGPLVIALLA+RKGNL
Sbjct: 1   MNLEIVAQLTVLALIVVSGPLVIALLAVRKGNL 33