DK951003 |
Clone id |
TST38A01NGRL0010_D17 |
Library |
TST38 |
Length |
523 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_D17. 5' end sequence. |
Accession |
DK951003 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL28Contig1 |
Sequence |
GGCAGAGGCCCCTTCTGTGTTCTTCTATTTCGCGCGTGTCCGCGTCCCGATTCAAGGGGC TGTGGACCTGGTCTTCTGCCGTCTCTCGCTCGTGGAGGCTCCTTGCTGGCGGTGGTGCAG GGAATGAAGTCGACGCTGATTGCGATGGAAGGTTCGGTCTCTACAGCCTGTGTGACGACG CCATGCTGTGCCAATTCTCCCCAGATTGCTTCGGTGGAGTTGGCTCATCATTGCGTGATG CAGTTGCATGTGATTCCCAAATCTGGCTATGGACTGCAAGGGCTTTAAATTCACCATTTC TAAGGTTGTAATTGTCGACTGTTTTCGAGGCCTGCGTGTAAGGTGTTGCTCTCTTTCTTG AGTTTTTTTTCTCCCCCCCCCCTGATCCTTCCATGCACTGTCAAAAAAAAAAGATTCATG GTTGTTGTCTCGTCTATGTAGTAATTGAAGGCACATCATAGAAATATCATTGTGTTGAAG TCCAAAAAAAAAAAAAAAAATAAAAAAAAAAAAATAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O23212 |
Definition |
sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
36.6 |
E-value |
0.061 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q0WVB4 |
Definition |
tr|Q0WVB4|Q0WVB4_ARATH Splicing factor like protein OS=Arabidopsis thaliana |
Align length |
145 |
Score (bit) |
36.6 |
E-value |
0.63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951003|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_D17, 5' (483 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q0WVB4|Q0WVB4_ARATH Splicing factor like protein OS=Arabidops... 37 0.63 tr|A9GJ56|A9GJ56_SORC5 Putative uncharacterized protein OS=Soran... 35 1.4 tr|Q4CVE1|Q4CVE1_TRYCR Putative uncharacterized protein OS=Trypa... 35 1.8 tr|Q08VD8|Q08VD8_STIAU Putative uncharacterized protein (Fragmen... 34 3.1 tr|A8N3M3|A8N3M3_COPC7 Putative uncharacterized protein OS=Copri... 34 3.1 tr|B3L500|B3L500_PLAKH Putative uncharacterized protein OS=Plasm... 34 4.1 tr|A0CP40|A0CP40_PARTE Chromosome undetermined scaffold_23, whol... 33 5.3 tr|B3RP67|B3RP67_TRIAD Putative uncharacterized protein OS=Trich... 33 7.0 tr|A5E0V6|A5E0V6_LODEL Predicted protein OS=Lodderomyces elongis... 33 7.0 tr|A3ABZ8|A3ABZ8_ORYSJ Putative uncharacterized protein OS=Oryza... 33 7.0 tr|A2R7A5|A2R7A5_ASPNC Contig An16c0100, complete genome. OS=Asp... 33 7.0 tr|Q4RNU8|Q4RNU8_TETNG Chromosome 2 SCAF15010, whole genome shot... 33 9.1 tr|Q9W0J0|Q9W0J0_DROME CG9194 OS=Drosophila melanogaster GN=CG91... 33 9.1 tr|Q6NR05|Q6NR05_DROME RE05370p OS=Drosophila melanogaster GN=CG... 33 9.1 tr|Q586V1|Q586V1_9TRYP NUP-1 protein, putative OS=Trypanosoma br... 33 9.1 tr|B6KLC6|B6KLC6_TOXGO Putative uncharacterized protein OS=Toxop... 33 9.1 tr|B4KVA7|B4KVA7_DROMO GI12133 OS=Drosophila mojavensis GN=GI121... 33 9.1 tr|A8XW25|A8XW25_CAEBR Putative uncharacterized protein OS=Caeno... 33 9.1
>tr|Q0WVB4|Q0WVB4_ARATH Splicing factor like protein OS=Arabidopsis thaliana GN=At4g36690 PE=2 SV=1 Length = 341
Score = 36.6 bits (83), Expect = 0.63 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 1/145 (0%) Frame = -1
Query: 435 RRDNNHESFFFDSAWKDQGGGRKKTQEREQHLTRRPRKQSTITTLEMVNLKPLQSIARFG 256 R +HE S +++ GR K +ER+ ++RR R + + E +S + Sbjct: 39 RESRDHERETSRSKDREREKGRDKDRERDSEVSRRSRDRDGEKSKE-------RSRDKDR 91
Query: 255 NHMQLHHAMMSQLHRSNLGRIGTAWRRHTGCRDRTFHRNQR-RLHSLHHRQQGASTSERR 79 +H + HH S HR + G RR G RD +R R R H +G S R Sbjct: 92 DHRERHH--RSSRHRDHSRERGE--RRERGGRDDDDYRRSRDRDHDRRRDDRGGRRSRRS 147
Query: 78 QKTRSTAP*IGTRTRAK*KNTEGAS 4 + TR+R+ K+ + S Sbjct: 148 RSRSKDRSERRTRSRSPSKSKQRVS 172
>tr|A9GJ56|A9GJ56_SORC5 Putative uncharacterized protein OS=Sorangium cellulosum (strain So ce56) GN=sce3199 PE=4 SV=1 Length = 922
Score = 35.4 bits (80), Expect = 1.4 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 14/107 (13%) Frame = +3
Query: 9 PLLCSSISRVSASRFKGLWTWSSAVSRSWR-----LLAGGGAGNEVDADCDGRFG--LYS 167 P L + +R S + +GLW WS A+ S R LA G E +A G L Sbjct: 616 PRLSEAAARWSPAAVRGLWAWSEALPPSERHMVLARLASGLPAEEREAGASEALGLALSL 675
Query: 168 LCDDAM-------LCQFSPDCFGGVGSSLRDAVACDSQIWLWTARAL 287 L DA+ +C +P G S+L A A + + L +A+ Sbjct: 676 LAGDALPPDACWSICALAPHAPAGAASALVQACAAAAGLHLPVVKAV 722
>tr|Q4CVE1|Q4CVE1_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi GN=Tc00.1047053507933.10 PE=4 SV=1 Length = 2323
Score = 35.0 bits (79), Expect = 1.8 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 4/93 (4%) Frame = -1
Query: 372 RKKTQEREQHLTRRP---RKQSTITTLEMVNLKPLQSIARFGN-HMQLHHAMMSQLHRSN 205 RK T+E E+ T+ +++ + + N L+ +AR ++ A ++LHRSN Sbjct: 1863 RKLTEELERQNTQSTAYLKEREQLQSALRENTSQLERVARKATADLETALAKTNELHRSN 1922
Query: 204 LGRIGTAWRRHTGCRDRTFHRNQRRLHSLHHRQ 106 + ++ TA RR R L SL RQ Sbjct: 1923 IEKLETALRREQQAAQEVRTARDRALESLEERQ 1955
>tr|Q08VD8|Q08VD8_STIAU Putative uncharacterized protein (Fragment) OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_4494 PE=4 SV=1 Length = 173
Score = 34.3 bits (77), Expect = 3.1 Identities = 21/51 (41%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = -1
Query: 252 HMQLHHAMMSQLHRSNLGRIGTAWRRH----TGCRDRTFHRNQRRLHSLHH 112 H Q H QLH + G GTA +H G RD R Q+RLH L H Sbjct: 84 HHQRHAEQQRQLHVGDRGADGTAAIQHHLDVDGRRDGVRQRRQQRLHPLDH 134
>tr|A8N3M3|A8N3M3_COPC7 Putative uncharacterized protein OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_00668 PE=4 SV=1 Length = 837
Score = 34.3 bits (77), Expect = 3.1 Identities = 16/33 (48%), Positives = 20/33 (60%) Frame = +3
Query: 42 ASRFKGLWTWSSAVSRSWRLLAGGGAGNEVDAD 140 A F+GL W A + W +LAGGG G VDA+ Sbjct: 630 AEAFEGLEKWKDA-RKDWEILAGGGGGGWVDAN 661
>tr|B3L500|B3L500_PLAKH Putative uncharacterized protein OS=Plasmodium knowlesi (strain H) GN=PKH_091710 PE=4 SV=1 Length = 721
Score = 33.9 bits (76), Expect = 4.1 Identities = 25/122 (20%), Positives = 41/122 (33%) Frame = -1
Query: 438 HRRDNNHESFFFDSAWKDQGGGRKKTQEREQHLTRRPRKQSTITTLEMVNLKPLQSIARF 259 H + N+H+ Q ++ ++ H +K L NL Sbjct: 254 HHQQNHHQQNLHQQNHHQQNHHQQNHHQQNHHQQNHHQKNHHQQNLHQQNL--------- 304
Query: 258 GNHMQLHHAMMSQLHRSNLGRIGTAWRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERR 79 H Q HH LH+ NL + + H + +Q+ LH +H QQ Sbjct: 305 --HQQKHH--QQNLHQQNLHQQNLHQQNHHQQNHHQQNLHQQNLHQQNHHQQNLHQQNHH 360
Query: 78 QK 73 Q+ Sbjct: 361 QQ 362
>tr|A0CP40|A0CP40_PARTE Chromosome undetermined scaffold_23, whole genome shotgun sequence OS=Paramecium tetraurelia GN=GSPATT00008948001 PE=4 SV=1 Length = 489
Score = 33.5 bits (75), Expect = 5.3 Identities = 20/78 (25%), Positives = 33/78 (42%) Frame = -1
Query: 447 QLLHRRDNNHESFFFDSAWKDQGGGRKKTQEREQHLTRRPRKQSTITTLEMVNLKPLQSI 268 Q L R+ N+H F D +Q R ++++ QHL + + S + E + K Q + Sbjct: 74 QQLDRKQNSHSKFILDINDANQKKIRPNSRQQIQHLVKSKKLDSNLKYHEELIQKQFQKL 133
Query: 267 ARFGNHMQLHHAMMSQLH 214 Q H Q+H Sbjct: 134 FELQKQHQQTHKSPPQIH 151
>tr|B3RP67|B3RP67_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_53422 PE=4 SV=1 Length = 505
Score = 33.1 bits (74), Expect = 7.0 Identities = 22/68 (32%), Positives = 31/68 (45%) Frame = -1
Query: 390 KDQGGGRKKTQEREQHLTRRPRKQSTITTLEMVNLKPLQSIARFGNHMQLHHAMMSQLHR 211 KD+ G + E+H R R S +T L NL P I + N +H ++ L + Sbjct: 27 KDKKGNKYHGNAIERHCNRLLRLISFVTNLVYYNL-PFIGIYLYRNDYTIHQVLVPILSK 85
Query: 210 SNLGRIGT 187 LG IGT Sbjct: 86 QALGSIGT 93
>tr|A5E0V6|A5E0V6_LODEL Predicted protein OS=Lodderomyces elongisporus GN=LELG_03243 PE=4 SV=1 Length = 463
Score = 33.1 bits (74), Expect = 7.0 Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 1/105 (0%) Frame = -1
Query: 384 QGGGRKKTQEREQHLTRRPRKQSTITTLEMVNLKPLQS-IARFGNHMQLHHAMMSQLHRS 208 + G + Q+++Q RR +M N P S + R N QL +Q ++ Sbjct: 5 EAGSTDEQQQQQQQQRRR----------KMYNTVPFSSQLERIENLRQLKSKSQNQQNQQ 54
Query: 207 NLGRIGTAWRRHTGCRDRTFHRNQRRLHSLHHRQQGASTSERRQK 73 N + +++HT + + ++NQ R H+ H Q +++Q+ Sbjct: 55 NQQSQQSQYKQHTQTQSQ--NKNQNRFHNQGHNNQQQQQQQQQQQ 97
>tr|A3ABZ8|A3ABZ8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_008320 PE=4 SV=1 Length = 542
Score = 33.1 bits (74), Expect = 7.0 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 8/86 (9%) Frame = -3
Query: 391 EGSGG--------GEKKNSRKRATPYTQASKTVDNYNLRNGEFKALAVHSQIWESHATAS 236 +G GG G+ R+R+ AS+ + R F + A S + ++ A + Sbjct: 46 DGDGGNLRGRRKLGKTAEKRRRSDVAAPASRISGKKHARTRSFSSTATKSSLPDAGARRA 105
Query: 235 RNDEPTPPKQSGENWHSMASSHRL*R 158 + EP PP S + A SHR+ R Sbjct: 106 LSQEPPPPPTSERPTTAGAGSHRVAR 131
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