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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951011
Clone id TST38A01NGRL0010_E01
Library
Length 683
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_E01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTCGTCTCTAGTACCTGTAGCGCTCTTTTGACAGAAACCTAATTGTGGCGGGCATGCTGA
GAGCAGGCTTGCTTTTTAACAGGATACCACGCACATTACATTTGCCTTAGCGGAGAGCTA
GGATGACTCAAAATCAGACACTTGCTGATGTTATGCTCGAGCCTGTTGAGCCGGAGACTT
TTCACTTCAGGAAAAGCAGCGGCAAAACCTGACCGATGGGGGGAGGAAGAACACCTTCGG
CTGTGGGAAAATGGACCGACTTCGAGCAAAGCCTCCATGCCTGGTGGTCTGGTAACAGTG
GACAGCTAAGGCAGACGAGGCGACAAGCGGCTGCTGCTCAGCCAGGCTCTCCCGAGGGTG
TTTTGAGTGGGATACTCACACCTGAGAGGTTTCTGAGATGGGGCATGCGTGGCATCTCTG
TATCCAAGGAAGATGAGGTTAGAGCAGCTTTGGCAGTTTCTGTGTTTATACTTGTGAATG
AGGCTGCTGGACCCTTAGGGCTGAATATGTGTTTCACGCTGAATTCCACAGAAAGCATTC
AATGTGCTAGATCGAATGTGGATTGGGCGGGTTTCATTGTTAGCGCAAGTGTGTCACCTG
ATATTGACATTTTTCAGCATCTTTGCTTGCCAGTCGAAATTACGCCTCCCCGGCAGTTTC
AAATACCTCCTAATGCCCATGTA
■■Homology search results ■■ -
sp_hit_id O18381
Definition sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster
Align length 75
Score (bit) 33.9
E-value 0.83
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951011|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E01, 5'
         (683 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila mela...    34   0.83 
sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens ...    33   1.1  
sp|A4VXA1|METE_STRSY 5-methyltetrahydropteroyltriglutamate--homo...    33   1.4  
sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pon...    32   2.4  
sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Hom...    32   2.4  
sp|Q03L46|METE_STRTD 5-methyltetrahydropteroyltriglutamate--homo...    32   4.1  
sp|A8AV19|METE_STRGC 5-methyltetrahydropteroyltriglutamate--homo...    32   4.1  
sp|A3CL11|METE_STRSV 5-methyltetrahydropteroyltriglutamate--homo...    31   5.4  
sp|Q8DQT2|METE_STRR6 5-methyltetrahydropteroyltriglutamate--homo...    31   5.4  
sp|Q97S31|METE_STRPN 5-methyltetrahydropteroyltriglutamate--homo...    31   5.4  
sp|Q04LT6|METE_STRP2 5-methyltetrahydropteroyltriglutamate--homo...    31   5.4  
sp|Q8JZM8|MUC4_MOUSE Mucin-4 OS=Mus musculus GN=Muc4 PE=2 SV=1         31   7.0  

>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila
           melanogaster GN=ey PE=1 SV=3
          Length = 857

 Score = 33.9 bits (76), Expect = 0.83
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -2

Query: 520 SVKHIFSPKGPAASFTSINTETAKAALTSSSLDTEMPRMPHLRNLSGVSIPLKTPSGEPG 341
           SV  I     P+   T++N  T  A + SS   T +P   H+R       P  T   + G
Sbjct: 538 SVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIP---HIR-------PSCTSDNDNG 587

Query: 340 *AAAACRLVCLSCPL 296
             +  CR VC  CPL
Sbjct: 588 RQSEDCRRVCSPCPL 602


>sp|Q14188|TFDP2_HUMAN Transcription factor Dp-2 OS=Homo sapiens
           GN=TFDP2 PE=1 SV=2
          Length = 446

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 21/66 (31%), Positives = 32/66 (48%)
 Frame = +3

Query: 483 AAGPLGLNMCFTLNSTESIQCARSNVDWAGFIVSASVSPDIDIFQHLCLPVEITPPRQFQ 662
           + GP  LN    LNST+S+    SN+D    + + +  P   + Q LCL  E+       
Sbjct: 353 STGPSWLNQGLLLNSTQSV----SNLD----LTTGATLPQSSVNQGLCLDAEVALATGQF 404

Query: 663 IPPNAH 680
           + PN+H
Sbjct: 405 LAPNSH 410


>sp|A4VXA1|METE_STRSY
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus suis (strain 05ZYH33)
           GN=metE PE=3 SV=1
          Length = 749

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +3

Query: 363 LSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNSTES 536
           + G+LT P   L W      +S KE  ++ ALA+   +L  EAAG + +         E 
Sbjct: 542 VKGMLTGPVTILNWSFPREDISIKESTLQIALAIKEEVLDLEAAG-IKIIQIDEAALREK 600

Query: 537 IQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
           +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 601 LPLRRSDWYSEYLDWAIPAFRLVHSTVAPDTQIHTHMC 638


>sp|Q5R880|PLA2R_PONAB Secretory phospholipase A2 receptor OS=Pongo
           abelii GN=PLA2R1 PE=2 SV=2
          Length = 1464

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 345 GSPEGVLSGI---LTPERFLRWGMRGISVSKEDEVRAALAVSVFILVNE 482
           G+P G   G+   LTPER L W  +GI V + + ++  +     +L  E
Sbjct: 16  GAPRGCAEGVAAALTPERLLEWQDKGIFVIQSESLKKCIQAGKSVLTLE 64


>sp|Q13018|PLA2R_HUMAN Secretory phospholipase A2 receptor OS=Homo
           sapiens GN=PLA2R1 PE=1 SV=2
          Length = 1463

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +3

Query: 345 GSPEGVLSGI---LTPERFLRWGMRGISVSKEDEVRAALAVSVFILVNE 482
           G+P G   G+   LTPER L W  +GI V + + ++  +     +L  E
Sbjct: 14  GAPRGCAEGVAAALTPERLLEWQDKGIFVIQSESLKKCIQAGKSVLTLE 62


>sp|Q03L46|METE_STRTD
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus thermophilus (strain
           ATCC BAA-491 / LMD-9) GN=metE PE=3 SV=1
          Length = 749

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +3

Query: 363 LSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNSTES 536
           + G+LT P   L W      +S K+  ++ ALA+   +L  EAAG + +         E 
Sbjct: 542 VKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAG-IKIIQIDEAALREK 600

Query: 537 IQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
           +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 601 LPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMC 638


>sp|A8AV19|METE_STRGC
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus gordonii (strain
           Challis / ATCC 35105 / CH1 / DL1 / V288) GN=metE PE=3
           SV=1
          Length = 750

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 10/101 (9%)
 Frame = +3

Query: 354 EGVLSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNS 527
           E  + G+LT P   L W      +S K+  ++ ALA+   +L  EAAG + +        
Sbjct: 539 EKPVKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAG-VKIIQIDEAAL 597

Query: 528 TESIQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
            E +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 598 REKLPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMC 638


>sp|A3CL11|METE_STRSV
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus sanguinis (strain
           SK36) GN=metE PE=3 SV=1
          Length = 750

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +3

Query: 363 LSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNSTES 536
           + G+LT P   L W      +S K+  ++ ALA+   +L  EAAG + +         E 
Sbjct: 542 VKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAG-VKIIQIDEAALREK 600

Query: 537 IQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
           +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 601 LPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMC 638


>sp|Q8DQT2|METE_STRR6
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus pneumoniae (strain
           ATCC BAA-255 / R6) GN=metE PE=3 SV=2
          Length = 749

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +3

Query: 363 LSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNSTES 536
           + G+LT P   L W      +S K+  ++ ALA+   +L  EAAG + +         E 
Sbjct: 542 VKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAG-VKIIQIDEAALREK 600

Query: 537 IQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
           +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 601 LPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMC 638


>sp|Q97S31|METE_STRPN
           5-methyltetrahydropteroyltriglutamate--homocysteine
           methyltransferase OS=Streptococcus pneumoniae GN=metE
           PE=3 SV=1
          Length = 749

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
 Frame = +3

Query: 363 LSGILT-PERFLRWGMRGISVS-KEDEVRAALAVSVFILVNEAAGPLGLNMCFTLNSTES 536
           + G+LT P   L W      +S K+  ++ ALA+   +L  EAAG + +         E 
Sbjct: 542 VKGMLTGPVTILNWSFPREDISIKDSTLQIALAIKDEVLDLEAAG-VKIIQIDEAALREK 600

Query: 537 IQCARSN-----VDWA--GF-IVSASVSPDIDIFQHLC 626
           +   RS+     +DWA   F +V ++V+PD  I  H+C
Sbjct: 601 LPLRRSDWYEDYLDWAIPAFRLVHSTVAPDTQIHTHMC 638
tr_hit_id Q4T208
Definition tr|Q4T208|Q4T208_TETNG Chromosome 7 SCAF10400, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 145
Score (bit) 34.3
E-value 7.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951011|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E01, 5'
         (683 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4T208|Q4T208_TETNG Chromosome 7 SCAF10400, whole genome shot...    34   7.6  
tr|Q14VQ4|Q14VQ4_9VIRU ORF54 OS=Ranid herpesvirus 1 PE=4 SV=1          34   7.6  
tr|Q0KFQ5|Q0KFQ5_RALEH Predicted restriction endonuclease OS=Ral...    34   7.6  
tr|Q59DQ2|Q59DQ2_DROME Eyeless, isoform D OS=Drosophila melanoga...    34   9.9  
tr|Q59DQ1|Q59DQ1_DROME Eyeless, isoform C OS=Drosophila melanoga...    34   9.9  
tr|Q53XF9|Q53XF9_DROME GH01157p OS=Drosophila melanogaster GN=ey...    34   9.9  

>tr|Q4T208|Q4T208_TETNG Chromosome 7 SCAF10400, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00008556001 PE=4 SV=1
          Length = 781

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 41/145 (28%), Positives = 58/145 (40%), Gaps = 9/145 (6%)
 Frame = -2

Query: 607 SISGDTLALTMKPAQS------TFDLAH*MLSVEFSVKHIFSPKGPAASFTSINTETAKA 446
           S+SG +  L+  P  S      TF  +    S   S K    PK  +A+ TS  T  A  
Sbjct: 406 SVSGASTGLSSSPLSSPRSPVFTFSQSEVTSSTTSSSK---DPKSGSAT-TSRPTRPAPD 461

Query: 445 ALTSSSLDTEMPRMPHLRNLSGVSIPLKTP---SGEPG*AAAACRLVCLSCPLLPDHQAW 275
             T +         P L ++   S+PL+TP   S  P    +  R         P    +
Sbjct: 462 PKTQTLPSKGPTERPPLHSMK--SLPLQTPRSPSPSPSPLLSPIRF------FFPSPSVF 513

Query: 274 RLCSKSVHFPTAEGVLPPPIGQVLP 200
           +  SK+VH P+     PPP+ QV P
Sbjct: 514 K--SKNVHSPSNSSAAPPPVSQVTP 536


>tr|Q14VQ4|Q14VQ4_9VIRU ORF54 OS=Ranid herpesvirus 1 PE=4 SV=1
          Length = 1331

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 14/82 (17%)
 Frame = -2

Query: 415 MPR----MPHLRNLSGVS----IPLKT------PSGEPG*AAAACRLVCLSCPLLPDHQA 278
           MPR    MP   NL GV+    IPL +      PS   G    ACR+  L+CPL+P    
Sbjct: 75  MPRGVKWMPEGFNLQGVTAECIIPLVSVKILSIPSANMGHNFNACRI--LTCPLMPKRLP 132

Query: 277 WRLCSKSVHFPTAEGVLPPPIG 212
            +LC+       AE  +P P G
Sbjct: 133 QKLCTFKYVLEKAEIPIPEPGG 154


>tr|Q0KFQ5|Q0KFQ5_RALEH Predicted restriction endonuclease
           OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428
           / Stanier 337) GN=H16_A0014 PE=4 SV=1
          Length = 371

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
 Frame = -2

Query: 463 TETAKAALTSSSLDTEMPRMPHLRNLSGVSIPLKTPSG-------EPG*AAAACRLVCLS 305
           T+  KA L  ++  T+    P +    GV +  K  +G       +P  AA A +     
Sbjct: 209 TQFQKAVLEKATATTKKDCPPFVEPPGGVPVLPKRGNGGSWKYPRDPLVAAEAVKSAEYR 268

Query: 304 CPLLPDHQAWRLCSKSVHFPTAEGVLP 224
           C L P+HQ ++  SK+V +  A  ++P
Sbjct: 269 CELFPEHQTFKSSSKNVPYVEAHHLIP 295


>tr|Q59DQ2|Q59DQ2_DROME Eyeless, isoform D OS=Drosophila
           melanogaster GN=ey PE=2 SV=1
          Length = 898

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -2

Query: 520 SVKHIFSPKGPAASFTSINTETAKAALTSSSLDTEMPRMPHLRNLSGVSIPLKTPSGEPG 341
           SV  I     P+   T++N  T  A + SS   T +P   H+R       P  T   + G
Sbjct: 579 SVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIP---HIR-------PSCTSDNDNG 628

Query: 340 *AAAACRLVCLSCPL 296
             +  CR VC  CPL
Sbjct: 629 RQSEDCRRVCSPCPL 643


>tr|Q59DQ1|Q59DQ1_DROME Eyeless, isoform C OS=Drosophila
           melanogaster GN=ey PE=2 SV=1
          Length = 857

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -2

Query: 520 SVKHIFSPKGPAASFTSINTETAKAALTSSSLDTEMPRMPHLRNLSGVSIPLKTPSGEPG 341
           SV  I     P+   T++N  T  A + SS   T +P   H+R       P  T   + G
Sbjct: 538 SVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIP---HIR-------PSCTSDNDNG 587

Query: 340 *AAAACRLVCLSCPL 296
             +  CR VC  CPL
Sbjct: 588 RQSEDCRRVCSPCPL 602


>tr|Q53XF9|Q53XF9_DROME GH01157p OS=Drosophila melanogaster GN=ey
           PE=2 SV=1
          Length = 624

 Score = 33.9 bits (76), Expect = 9.9
 Identities = 24/75 (32%), Positives = 32/75 (42%)
 Frame = -2

Query: 520 SVKHIFSPKGPAASFTSINTETAKAALTSSSLDTEMPRMPHLRNLSGVSIPLKTPSGEPG 341
           SV  I     P+   T++N  T  A + SS   T +P   H+R       P  T   + G
Sbjct: 305 SVSTINGLSSPSTLSTNVNAPTLGAGIDSSESPTPIP---HIR-------PSCTSDNDNG 354

Query: 340 *AAAACRLVCLSCPL 296
             +  CR VC  CPL
Sbjct: 355 RQSEDCRRVCSPCPL 369