DK951022
Clone id TST38A01NGRL0010_E13
Library
Length 669
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_E13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
CATTTGTCAGCACGCTGCTTTGTCTTCGCGCAGCCACAGCTGCCGCTTCTGGCTCGTCGT
TGCCGGCTGCATCACCTCGCATCCGTCTGTAGCGTGGACTCGCGTGGTGGCGCACACGCA
GCGGCAGCTCCTCCACTGCAGCTCTCGACAGCGAGAAGGCTCAATCGCGTGAATCAGCAC
GGTGGGCTATTCGACTCGATCACCCAACCATCGCACGTGCAGAGGCTAGGGCCTCTTCTT
CCTCCTCCTCCCTCTGCGGCTTCTCACCTCCGAAGCCACATTTTGGCAATGGCAGCTCGA
AGTGCTTGCCAGAGCTCTTCCCTCTTGAATTCCCTCACCCAGCTACCTTGCGTTCCTTTC
CCTACATCCTCCACCAACGTGAGCTTTGGTAGTTCCTGCCGTGCAAACCACCTCCCGCTT
CATGTCACTGCATCAGCATCGGATAGCCGCAAGGCAATGAAAGTTGATGGAACGGTCTTT
ACGGTCAGAACAGTGCTTAACATTAATCCCGTGGCCAAGCACGGGGCTCCATCAAGCGTA
CCTGCTGCTGCTCCCATTTCTGTGGTGGCCACGGAAGTGGAGACTTTACCCTTGGATAGG
TTGAAGACTGGCTATCTCANATTCAAGGAAAACTACATAAAAAATCAAGCACTTGTGAAG
TCGCTGGCA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951022|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E13, 5'
(669 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id A5CUP1
Definition tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382)
Align length 88
Score (bit) 33.9
E-value 9.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951022|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E13, 5'
(669 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein OS=Claviba... 34 9.4

>tr|A5CUP1|A5CUP1_CLAM3 Conserved hypothetical protein
OS=Clavibacter michiganensis subsp. michiganensis
(strain NCPPB 382) GN=CMM_2744 PE=4 SV=1
Length = 237

Score = 33.9 bits (76), Expect = 9.4
Identities = 24/88 (27%), Positives = 36/88 (40%)
Frame = -2

Query: 542 GTLDGAPCLATGLMLSTVLTVKTVPSTFIALRLSDADAVT*SGRWFARQELPKLTLVEDV 363
G + P + GL L V +SDA ++ R ARQ L + L +V
Sbjct: 113 GAVFAFPLVVAGLSLGAVDLYSRTARDISTQEVSDATTLS---RIVARQVLRRALLAAEV 169

Query: 362 GKGTQGSWVREFKREELWQALRAAIAKM 279
+ G W + R E+ QA +A+M
Sbjct: 170 RQEETGGWEGRYSRREVHQATGMVVAQM 197