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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951028
Clone id TST38A01NGRL0010_E19
Library
Length 619
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_E19. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TACTTTGACCTATGAAGGAAGTGGGAGTTGCAGCATCTTTCCTCCCCAGCGTGAAGGGAA
GAAAAAAGTGTTGACTTCCCTTTTTTTTTTTTTGTAGGGAGAAAGGAGGTAGAGATCAAG
TAAGTGGGGCAACAACTGTCACCCCTGCCAGTTGTTCCACGTATAGGAGATAGGGATGAC
GGGATTTGAACCTGCGACATTTTGTACCCAAAACAAACACGCTACCGAGCTGCGTTACAT
CCCTTTTGGTTGTACTTGATACCATCAACCCCTTGCTTGTTATTCGATCCAATTGATTAT
AATCTTTTCCCACGAATACTGGCTACCGTCGAAGTAGGAATGCATTTTTTGGGAAGCTGC
TAATCCCTGCCCTCTCTTTATTTTAATTCCCACTTTTCATTCTCTACACCACTTCTCGAC
TTAGTATTCTGGAGTCGGGTACTGGAAAAAACTTTATTCTTCTTTCAAGTAAATGTGAGA
ATTTGATTTAGATATAGTTAGATTTTAAGTAGTAAAGCTGGTGAGGATAAAGGCAAGTAG
GTAGGGAAAAAAAATTGATAAGAAGGAGGATTCCAATGCAACATGTAAAAATATATCTTT
CCACAGCCCCTGTTGTAGC
■■Homology search results ■■ -
sp_hit_id Q85FK2
Definition sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS=Adiantum capillus-veneris
Align length 14
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E19, 5'
         (619 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX OS...    32   3.4  
sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS...    31   5.8  
sp|Q3V0Q7|TMPSC_MOUSE Transmembrane protease, serine 12 OS=Mus m...    30   7.6  

>sp|Q85FK2|PSAJ_ADICA Photosystem I reaction center subunit IX
           OS=Adiantum capillus-veneris GN=psaJ PE=2 SV=2
          Length = 42

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = +3

Query: 576 MQHVKIYLSTAPVV 617
           MQHVKIYLSTAPVV
Sbjct: 1   MQHVKIYLSTAPVV 14


>sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22
           OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1
          Length = 751

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 15/85 (17%)
 Frame = -3

Query: 305 RL*SIGSNNKQGVDGIKYNQKGCNAA-------R*RVCFGYKMSQVQIPS--------SL 171
           RL S+G +N+  +  I+    GC ++         ++C GY   Q +IP+         L
Sbjct: 140 RLVSVGCDNRALITDIESQITGCESSCDGDKSRLDKICGGYTCCQAKIPADRPQVIGVDL 199

Query: 170 SPIRGTTGRGDSCCPTYLISTSFLP 96
               G T +G +C   +L + ++ P
Sbjct: 200 ESSGGNTTQGGNCKVAFLTNETYSP 224


>sp|Q3V0Q7|TMPSC_MOUSE Transmembrane protease, serine 12 OS=Mus
           musculus GN=Tmprss12 PE=2 SV=1
          Length = 336

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 617 YNRGCGKIYFYMLHWNPPSYQFFFPTYLPLSSPALLLKI*LYLNQILT 474
           Y  GCG+ +F  ++ NP  +Q +   YL   +   L  + + L Q+LT
Sbjct: 278 YGHGCGRRHFPGVYSNPSFFQEWMTHYLSQGNINRLFNMDIVLGQVLT 325
tr_hit_id A4QM24
Definition tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis
Align length 27
Score (bit) 53.5
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951028|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_E19, 5'
         (619 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1            54   1e-05
tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whol...    49   3e-04
tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein OS=Idiom...    39   0.32 
tr|A7A485|A7A485_BIFAD Putative uncharacterized protein OS=Bifid...    38   0.55 
tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein OS=Robig...    35   3.6  
tr|Q38FC4|Q38FC4_9TRYP Putative uncharacterized protein OS=Trypa...    34   6.0  
tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacil...    34   6.1  

>tr|A4QM24|A4QM24_PINKO ORF66a OS=Pinus koraiensis PE=4 SV=1
          Length = 66

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 24/27 (88%), Positives = 25/27 (92%)
 Frame = -1

Query: 247 KRDVTQLGSVFVLGTKCRRFKSRHPYL 167
           +RDV QLGSVFVLGTKCRRFKS HPYL
Sbjct: 3   RRDVAQLGSVFVLGTKCRRFKSCHPYL 29


>tr|A7QDC0|A7QDC0_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035781001 PE=4 SV=1
          Length = 55

 Score = 48.5 bits (114), Expect = 3e-04
 Identities = 22/28 (78%), Positives = 23/28 (82%)
 Frame = -1

Query: 247 KRDVTQLGSVFVLGTKCRRFKSRHPYLL 164
           +RDV QLGS FVLGTKC  FKS HPYLL
Sbjct: 25  ERDVAQLGSAFVLGTKCHGFKSCHPYLL 52


>tr|A3WQ21|A3WQ21_9GAMM Putative uncharacterized protein
           OS=Idiomarina baltica OS145 GN=OS145_12211 PE=4 SV=1
          Length = 109

 Score = 38.5 bits (88), Expect = 0.32
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +2

Query: 170 IGMTGFEPATFCTQNKHATELRYIPF 247
           +G TGFEPAT  TQ K AT+LRY PF
Sbjct: 2   VGETGFEPATPWTQTKCATKLRYSPF 27


>tr|A7A485|A7A485_BIFAD Putative uncharacterized protein
           OS=Bifidobacterium adolescentis L2-32 GN=BIFADO_00637
           PE=4 SV=1
          Length = 79

 Score = 37.7 bits (86), Expect = 0.55
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 170 IGMTGFEPATFCTQNKHATELRYIPFG 250
           +G+ GFEPA   ++ K AT+LRY PFG
Sbjct: 23  VGLAGFEPAASSSRTKRATKLRYSPFG 49


>tr|A4CP42|A4CP42_9FLAO Putative uncharacterized protein
           OS=Robiginitalea biformata HTCC2501 GN=RB2501_01246 PE=4
           SV=1
          Length = 128

 Score = 35.0 bits (79), Expect = 3.6
 Identities = 16/27 (59%), Positives = 19/27 (70%)
 Frame = +2

Query: 170 IGMTGFEPATFCTQNKHATELRYIPFG 250
           +GMTGFEPAT  T   ++T L YIP G
Sbjct: 99  VGMTGFEPATTRTPCVYSTRLNYIPNG 125


>tr|Q38FC4|Q38FC4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb09.160.2730 PE=4 SV=1
          Length = 159

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -3

Query: 596 IYFYMLHWNPPSYQFFFPTYLPLSSPALLLKI*LYLNQIL 477
           + FY+ H  PP+  FFFP +L L SP L     ++ N I+
Sbjct: 75  VSFYLTH-PPPTVHFFFPFHLVLCSPVLFFSFLIHFNFII 113


>tr|A3IDC8|A3IDC8_9BACI Putative uncharacterized protein OS=Bacillus
           sp. B14905 GN=BB14905_20880 PE=4 SV=1
          Length = 60

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = -2

Query: 216 LFWVQNVAGSNPVIPISYTW 157
           L W Q V GSNPVIPI Y W
Sbjct: 5   LVWDQGVVGSNPVIPIIYKW 24