BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951034|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_F01, 5'
         (676 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HUX1|SPEA_PSEAE Biosynthetic arginine decarboxylase OS=Pseu...    31   5.3  
sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=...    30   9.0  

>sp|Q9HUX1|SPEA_PSEAE Biosynthetic arginine decarboxylase
           OS=Pseudomonas aeruginosa GN=speA PE=3 SV=1
          Length = 636

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
 Frame = +1

Query: 301 QYSDTAVAIPEAYQKEAMYFSLC-RVKSQLGKHLKTKASYLSEEHTQTSQAYIF*QLIKQ 477
           QY+D  +++ +    E  YF++C R+ +QL    ++    L E + + +  YI    + Q
Sbjct: 414 QYADGKISLAQKALAEQCYFAICRRLHNQLKARQRSHRQVLDELNDKLADKYICNFSVFQ 473

Query: 478 TACDV*ALFY*HSCLPLH 531
           +  D  A+      LPLH
Sbjct: 474 SLPDTWAIGQVLPILPLH 491


>sp|Q8IZH2|XRN1_HUMAN 5'-3' exoribonuclease 1 OS=Homo sapiens GN=XRN1
            PE=1 SV=1
          Length = 1706

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +1

Query: 511  HSCLPLHPSIFCWEDTILDMFSSFSVPVTRGGTFLNGLKSVN 636
            H  +P   + FC  D ++++  +FSVPV   GT + G+K  N
Sbjct: 1093 HGVIPDRDAEFCLFDRVVNVRENFSVPVGLRGTII-GIKGAN 1133

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951034|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_F01, 5'
         (676 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7S888|Q7S888_NEUCR Predicted protein OS=Neurospora crassa GN...    35   3.3  
tr|Q01BP4|Q01BP4_OSTTA Putative RNA-binding protein 10 (ISS) OS=...    34   7.4  

>tr|Q7S888|Q7S888_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU05255 PE=4 SV=1
          Length = 1001

 Score = 35.4 bits (80), Expect = 3.3
 Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
 Frame = -1

Query: 280 EAKSRTKESLSERREGQNPREGQVE*PHQEAQHNEGRLPKRP---PHPIQHLRH 128
           E ++ T  ++ E+R  + P++ Q +   Q+ QH++ + P++P   PHP  H  H
Sbjct: 634 ETETETAGAVGEKRMVEQPQQPQPQPQQQQHQHHQQQQPQQPQPQPHPQPHQHH 687


>tr|Q01BP4|Q01BP4_OSTTA Putative RNA-binding protein 10 (ISS)
           OS=Ostreococcus tauri GN=Ot04g00050 PE=4 SV=1
          Length = 324

 Score = 34.3 bits (77), Expect = 7.4
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = -1

Query: 292 RHGSEAKSRTKESLSERREGQNPREGQVE*PHQEAQHNEGRLPKRPPHPIQHLRHI 125
           R G E   + ++  S  R+   PR      P ++AQH E R P  PP    H   I
Sbjct: 30  RRGDEDYEQRRDRYSRERQVSPPRRRTEWPPDEQAQHRERRAPSPPPSASTHQTQI 85