| DK951042 |
| Clone id |
TST38A01NGRL0010_F09 |
| Library |
TST38 |
| Length |
476 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_F09. 5' end sequence. |
| Accession |
DK951042 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
CL687Contig1 |
| Sequence |
GCCCTTACAGCTTTGATGGAAAAGGAAATTACAATCTTGGGCTCAAAGAGCAGGGTGTGT TCCCAGAAATAAAATTTTTTTAAAAAGACAAACCCAGGGGGATGGACATATCTATTGTTA CCTCAGCAAGGACAGATAAAGAAGGTCAAAAGTTGTTGACATTGCTAGGAATGCCGTTCC GTGCAGGTGATGTATCAGCAAAACCTGTTGTGATAAAGAAGAAAGGAAACTTCAATATCA AGGGTGGAAAGGGCAAAGCTAAGAAGCCAGTCACGAAGAGTAAGAAGAAGAAGTGAGGAA GGTAAAGGCAAATGCTGGAGACAACCATGTTGGTTGTTGATTTTGGGGGGAGAAGAGATG GCTATTTTTTTTTTTCCCCCCCCCCCCAANGGGAAANTGAAGTTAAAAAAAAAAGGGGGG GGGGATGCGGTGACCCGTTCCAATGGTCATTTTGATTCTCTGAGTAAAGGCTATGG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O04603 |
| Definition |
sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana |
| Align length |
62 |
| Score (bit) |
88.2 |
| E-value |
2.0e-17 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951042|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_F09, 5' (476 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=A... 88 2e-17 sp|P24315|RL5_THEAQ 50S ribosomal protein L5 OS=Thermus aquaticu... 86 1e-16 sp|Q7V533|RL5_PROMM 50S ribosomal protein L5 OS=Prochlorococcus ... 84 2e-16 sp|A2CC40|RL5_PROM3 50S ribosomal protein L5 OS=Prochlorococcus ... 84 3e-16 sp|Q1XDI6|RK5_PORYE 50S ribosomal protein L5, chloroplastic OS=P... 84 4e-16 sp|P51302|RK5_PORPU 50S ribosomal protein L5, chloroplastic OS=P... 84 4e-16 sp|P73308|RL5_SYNY3 50S ribosomal protein L5 OS=Synechocystis sp... 83 7e-16 sp|B0C1E5|RL5_ACAM1 50S ribosomal protein L5 OS=Acaryochloris ma... 83 7e-16 sp|Q1IX84|RL5_DEIGD 50S ribosomal protein L5 OS=Deinococcus geot... 82 9e-16 sp|Q7V9X4|RL5_PROMA 50S ribosomal protein L5 OS=Prochlorococcus ... 82 1e-15 sp|Q7NEG4|RL5_GLOVI 50S ribosomal protein L5 OS=Gloeobacter viol... 82 2e-15 sp|P82192|RK5_SPIOL 50S ribosomal protein L5, chloroplastic OS=S... 82 2e-15 sp|Q0ID17|RL5_SYNS3 50S ribosomal protein L5 OS=Synechococcus sp... 81 2e-15 sp|A5GIT3|RL5_SYNPW 50S ribosomal protein L5 OS=Synechococcus sp... 81 2e-15 sp|Q9RXJ0|RL5_DEIRA 50S ribosomal protein L5 OS=Deinococcus radi... 81 2e-15 sp|Q8DMM0|RL5_THEEB 50S ribosomal protein L5 OS=Thermosynechococ... 80 4e-15 sp|A1ALV3|RL5_PELPD 50S ribosomal protein L5 OS=Pelobacter propi... 80 4e-15 sp|P41201|RL5_THETH 50S ribosomal protein L5 OS=Thermus thermoph... 80 5e-15 sp|Q5SHQ0|RL5_THET8 50S ribosomal protein L5 OS=Thermus thermoph... 80 5e-15 sp|Q72I16|RL5_THET2 50S ribosomal protein L5 OS=Thermus thermoph... 80 5e-15 sp|Q7UZV6|RL5_PROMP 50S ribosomal protein L5 OS=Prochlorococcus ... 80 5e-15 sp|O24701|RL5_SYNP6 50S ribosomal protein L5 OS=Synechococcus sp... 80 6e-15 sp|Q31L19|RL5_SYNE7 50S ribosomal protein L5 OS=Synechococcus el... 80 6e-15 sp|Q318J6|RL5_PROM9 50S ribosomal protein L5 OS=Prochlorococcus ... 80 6e-15 sp|A8G749|RL5_PROM2 50S ribosomal protein L5 OS=Prochlorococcus ... 80 6e-15 sp|A3PF35|RL5_PROM0 50S ribosomal protein L5 OS=Prochlorococcus ... 80 6e-15 sp|Q03IG3|RL5_STRTD 50S ribosomal protein L5 OS=Streptococcus th... 79 8e-15 sp|Q5M2C5|RL5_STRT2 50S ribosomal protein L5 OS=Streptococcus th... 79 8e-15 sp|Q5LXS3|RL5_STRT1 50S ribosomal protein L5 OS=Streptococcus th... 79 8e-15 sp|B1X4Z6|RK5_PAUCH 50S ribosomal protein L5, chromatophore OS=P... 79 8e-15
>sp|O04603|RK5_ARATH 50S ribosomal protein L5, chloroplastic OS=Arabidopsis thaliana GN=RPL5 PE=1 SV=1 Length = 262
Score = 88.2 bits (217), Expect = 2e-17 Identities = 40/62 (64%), Positives = 51/62 (82%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG GNY++G+K+QGVFPEI+F K RGMD+ I T+A++D+EGQKLL L+GMPFR Sbjct: 174 PSSFDGNGNYSIGVKDQGVFPEIRFDAVGKTRGMDVCISTTAKSDQEGQKLLALMGMPFR 233
Query: 183 AG 188 G Sbjct: 234 EG 235
>sp|P24315|RL5_THEAQ 50S ribosomal protein L5 OS=Thermus aquaticus GN=rplE PE=3 SV=1 Length = 182
Score = 85.5 bits (210), Expect = 1e-16 Identities = 40/60 (66%), Positives = 49/60 (81%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNYNLGLKEQ +FPEI + D PRGMDI++VT+A+TD+E + LL LLG PFR Sbjct: 122 PNSFDGRGNYNLGLKEQLIFPEITYDMVDVPRGMDIAVVTTAKTDEEAKALLELLGFPFR 181
>sp|Q7V533|RL5_PROMM 50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9313) GN=rplE PE=3 SV=1 Length = 179
Score = 84.3 bits (207), Expect = 2e-16 Identities = 41/61 (67%), Positives = 49/61 (80%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNY LG++EQ +FPEI F D RGMDI+IVTSARTD+EGQ LL +GMPFR Sbjct: 118 PKSFDGRGNYTLGVREQLIFPEISFDKIDAIRGMDITIVTSARTDEEGQSLLREMGMPFR 177
Query: 183 A 185 + Sbjct: 178 S 178
>sp|A2CC40|RL5_PROM3 50S ribosomal protein L5 OS=Prochlorococcus marinus (strain MIT 9303) GN=rplE PE=3 SV=1 Length = 179
Score = 84.0 bits (206), Expect = 3e-16 Identities = 40/61 (65%), Positives = 49/61 (80%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNY LG++EQ +FPE+ F D RGMDI+IVTSARTD+EGQ LL +GMPFR Sbjct: 118 PKSFDGRGNYTLGVREQLIFPEVSFDKIDAIRGMDITIVTSARTDEEGQSLLREMGMPFR 177
Query: 183 A 185 + Sbjct: 178 S 178
>sp|Q1XDI6|RK5_PORYE 50S ribosomal protein L5, chloroplastic OS=Porphyra yezoensis GN=rpl5 PE=3 SV=1 Length = 181
Score = 83.6 bits (205), Expect = 4e-16 Identities = 41/60 (68%), Positives = 49/60 (81%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDGKGNYNLGL+EQ +FPEI + D+ RG+DISIVT+A+TD+EG LL LGMPFR Sbjct: 120 PRSFDGKGNYNLGLREQLIFPEIDYDNIDQIRGLDISIVTTAKTDQEGLALLKKLGMPFR 179
>sp|P51302|RK5_PORPU 50S ribosomal protein L5, chloroplastic OS=Porphyra purpurea GN=rpl5 PE=3 SV=1 Length = 181
Score = 83.6 bits (205), Expect = 4e-16 Identities = 41/60 (68%), Positives = 49/60 (81%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDGKGNYNLGL+EQ +FPEI + D+ RG+DISIVT+A+TD+EG LL LGMPFR Sbjct: 120 PKSFDGKGNYNLGLREQLIFPEIDYDNIDQIRGLDISIVTTAKTDQEGLALLKKLGMPFR 179
>sp|P73308|RL5_SYNY3 50S ribosomal protein L5 OS=Synechocystis sp. (strain PCC 6803) GN=rplE PE=3 SV=2 Length = 180
Score = 82.8 bits (203), Expect = 7e-16 Identities = 38/61 (62%), Positives = 51/61 (83%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNY+LG++EQ +FPEI + D+ RGMD+SI+TSA+TD+EG+ LL LGMPFR Sbjct: 120 PNSFDGRGNYSLGIREQLIFPEIDYDTIDQIRGMDVSIITSAQTDEEGRALLKALGMPFR 179
Query: 183 A 185 + Sbjct: 180 S 180
>sp|B0C1E5|RL5_ACAM1 50S ribosomal protein L5 OS=Acaryochloris marina (strain MBIC 11017) GN=rplE PE=3 SV=1 Length = 181
Score = 82.8 bits (203), Expect = 7e-16 Identities = 38/60 (63%), Positives = 50/60 (83%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNY LGL+EQ +FPE+ + D+ RGMDISI+T+A+TD+EG+ LL +LGMPFR Sbjct: 120 PKSFDGRGNYTLGLREQLIFPEVDYDSIDQIRGMDISIITTAKTDEEGRALLKVLGMPFR 179
>sp|Q1IX84|RL5_DEIGD 50S ribosomal protein L5 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplE PE=3 SV=1 Length = 179
Score = 82.4 bits (202), Expect = 9e-16 Identities = 38/60 (63%), Positives = 49/60 (81%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GNYNLG+KEQ +FPEI + DK RGMDI+IVT+A+TD+E + LL +G+PFR Sbjct: 119 PNSFDGRGNYNLGIKEQLIFPEITYDMVDKVRGMDITIVTTAKTDEEARALLQAMGLPFR 178
>sp|Q7V9X4|RL5_PROMA 50S ribosomal protein L5 OS=Prochlorococcus marinus GN=rplE PE=3 SV=1 Length = 179
Score = 82.0 bits (201), Expect = 1e-15 Identities = 40/61 (65%), Positives = 49/61 (80%) Frame = +3
Query: 3 PYSFDGKGNYNLGLKEQGVFPEIKFF*KDKPRGMDISIVTSARTDKEGQKLLTLLGMPFR 182 P SFDG+GN+ LG+KEQ +FPEI F D RGMDI+IVTSARTD+EG+ LL +GMPFR Sbjct: 118 PKSFDGRGNFTLGVKEQLIFPEISFDKIDAIRGMDITIVTSARTDEEGRALLKEMGMPFR 177
Query: 183 A 185 + Sbjct: 178 S 178
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9TXG3 |
| Definition |
tr|A9TXG3|A9TXG3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
60 |
| Score (bit) |
89.0 |
| E-value |
1.0e-16 |
| Report |
 |