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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951046
Clone id TST38A01NGRL0010_F13
Library
Length 661
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_F13. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAGCCCCTGCAAGAGACCTTGTGCTCACATTAAAAGCTTACGTGCAGAAACTTGAGGAA
GAAGCAGGCTCCGCCTAATCTTGAGGAACCCTATATATGTAGACATCATCCTGTTTGCGG
ATACACTCTTCAGGTAGTTGAACTCTAATGGTCTCCATTGGCACCAAATTCTCAACAGGT
TGTATCACTATCTTGTCCAAGAAACACAGGCCTGTTATCCTCACCAGTGGCCATGTGCTC
ACATTAAAAGCTTACGTGCAGAAACTTGAGGAAGAAGCAGGCTCCGCCTAAGGTTGATAA
ACCCTATATATGTAGACATCATCCTGTTTGCGGATACACTCTTCAGGTAGTTGAACTCTA
ATGGTCTCCATTGGCACCAAATTCTCAACAGGTTGTATCACTATCTTGTCCAAGAAACAC
AGGCCTGTTATCCTCACCAGTGGCCATGTGGTGAATGCTTGTTGCCTTAAATCTACTGAG
CTCTGGAAGAGAGGCTTAAACTTAACCAGTCTCTGGAAACAACACAGCTCTCAGCCTTTG
TAATGGAATGCGTTACTGATAAAGGCAATTGAGCAGCTTTGAGTCCTCATACATCTTATC
TTCGTGCTTTAGGGGACCTTAGTTGACCTGTATACTCTCAGCATCCTTGTCCACTTACAG
T
■■Homology search results ■■ -
sp_hit_id O80362
Definition sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum
Align length 24
Score (bit) 41.2
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951046|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_F13, 5'
         (661 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic OS...    41   0.005
sp|Q9FY50|RK10_ARATH 50S ribosomal protein L10, chloroplastic OS...    33   1.3  
sp|Q3M9K5|PPNK2_ANAVT Probable inorganic polyphosphate/ATP-NAD k...    32   2.3  
sp|Q8Z074|PPNK2_ANASP Probable inorganic polyphosphate/ATP-NAD k...    32   2.3  

>sp|O80362|RK10_TOBAC 50S ribosomal protein L10, chloroplastic
           OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1
          Length = 227

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGS 72
           QAPAR+LV+ LKAYV+KLEEE GS
Sbjct: 203 QAPARNLVMVLKAYVKKLEEEGGS 226


>sp|Q9FY50|RK10_ARATH 50S ribosomal protein L10, chloroplastic
           OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1
          Length = 220

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 12/24 (50%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGS 72
           QAPAR++++ L AY++KLE+E+ +
Sbjct: 197 QAPAREVIMVLMAYIKKLEDESNA 220


>sp|Q3M9K5|PPNK2_ANAVT Probable inorganic polyphosphate/ATP-NAD
           kinase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC
           7937) GN=ppnK2 PE=3 SV=1
          Length = 306

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +1

Query: 406 LSKKHRPVILTSGHVVNACCLK----STELWKRGLNLTSLWKQH 525
           +S   RP+IL +G VV+   L     ST+LW  G+  TS+W  H
Sbjct: 218 MSLSSRPLILPAGSVVSIWPLGDYDLSTKLWMDGVLATSIWPAH 261


>sp|Q8Z074|PPNK2_ANASP Probable inorganic polyphosphate/ATP-NAD
           kinase 2 OS=Anabaena sp. (strain PCC 7120) GN=ppnK2 PE=3
           SV=1
          Length = 306

 Score = 32.3 bits (72), Expect = 2.3
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +1

Query: 406 LSKKHRPVILTSGHVVNACCLK----STELWKRGLNLTSLWKQH 525
           +S   RP+IL +G VV+   L     ST+LW  G+  TS+W  H
Sbjct: 218 MSLSSRPLILPAGSVVSIWPLGDYDLSTKLWMDGVLATSIWPAH 261
tr_hit_id A9NRD8
Definition tr|A9NRD8|A9NRD8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 25
Score (bit) 46.6
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951046|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_F13, 5'
         (661 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NRD8|A9NRD8_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|B6SUJ0|B6SUJ0_MAIZE 50S ribosomal protein L10 OS=Zea mays PE=...    41   0.075
tr|B4G1Q5|B4G1Q5_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.075
tr|A9TBU0|A9TBU0_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.075
tr|A9SGM3|A9SGM3_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.075
tr|B6NHY8|B6NHY8_BRAFL Putative uncharacterized protein (Fragmen...    40   0.13 
tr|A7Q3Z6|A7Q3Z6_VITVI Chromosome chr13 scaffold_48, whole genom...    39   0.22 
tr|Q9ZSS9|Q9ZSS9_ORYSA 50S ribosomal protein L10 OS=Oryza sativa...    38   0.64 
tr|Q10N30|Q10N30_ORYSJ Os03g0284400 protein OS=Oryza sativa subs...    38   0.64 
tr|B8ALJ1|B8ALJ1_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.64 
tr|B3E2S4|B3E2S4_GEOLS Oligopeptide/dipeptide ABC transporter, A...    37   1.4  
tr|B7FHY0|B7FHY0_MEDTR Putative uncharacterized protein OS=Medic...    35   3.2  
tr|B6PFQ4|B6PFQ4_BRAFL Putative uncharacterized protein (Fragmen...    34   7.1  
tr|B6NKE6|B6NKE6_BRAFL Putative uncharacterized protein OS=Branc...    34   9.2  

>tr|A9NRD8|A9NRD8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 256

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 22/25 (88%), Positives = 24/25 (96%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARDLV TLKAYVQKLEEE+G+A
Sbjct: 229 QAPARDLVFTLKAYVQKLEEESGNA 253


>tr|B6SUJ0|B6SUJ0_MAIZE 50S ribosomal protein L10 OS=Zea mays PE=2
           SV=1
          Length = 222

 Score = 40.8 bits (94), Expect = 0.075
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARD+V  L AYV+KLEEEAG+A
Sbjct: 198 QAPARDVVAVLSAYVRKLEEEAGAA 222


>tr|B4G1Q5|B4G1Q5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 222

 Score = 40.8 bits (94), Expect = 0.075
 Identities = 19/25 (76%), Positives = 22/25 (88%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARD+V  L AYV+KLEEEAG+A
Sbjct: 198 QAPARDVVAVLSAYVRKLEEEAGAA 222


>tr|A9TBU0|A9TBU0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_193574 PE=3 SV=1
          Length = 221

 Score = 40.8 bits (94), Expect = 0.075
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEA 66
           QAPARDLV TLKAYV+KLE+EA
Sbjct: 200 QAPARDLVFTLKAYVKKLEDEA 221


>tr|A9SGM3|A9SGM3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_212126 PE=4 SV=1
          Length = 225

 Score = 40.8 bits (94), Expect = 0.075
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEA 66
           QAPARDLV TLKAYV+KLE+EA
Sbjct: 204 QAPARDLVFTLKAYVKKLEDEA 225


>tr|B6NHY8|B6NHY8_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_127589 PE=4 SV=1
          Length = 757

 Score = 40.0 bits (92), Expect = 0.13
 Identities = 30/112 (26%), Positives = 45/112 (40%)
 Frame = +2

Query: 2   KPLQETLCSH*KLTCRNLRKKQAPPNLEEPYICRHHPVCGYTLQVVEL*WSPLAPNSQQV 181
           KP +   C +     RNL +  A  N E+PY+C     CG+   V            +  
Sbjct: 155 KPYKCDQCEYSATQKRNLDRHMAKHNGEKPYMCEE---CGFRTAV------------RSQ 199

Query: 182 VSLSCPRNTGLLSSPVAMCSH*KLTCRNLRKKQAPPKVDKPYICRHHPVCGY 337
           +S+   ++TG        C +     RNL +  A    +KPY+C     CGY
Sbjct: 200 ISVHMRKHTGEKPYKCDQCEYSATQKRNLDRHMAKHNGEKPYMCEE---CGY 248


>tr|A7Q3Z6|A7Q3Z6_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029480001
           PE=3 SV=1
          Length = 226

 Score = 39.3 bits (90), Expect = 0.22
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEE 63
           QAPARDLV+ LKAYV+KLEEE
Sbjct: 205 QAPARDLVMVLKAYVKKLEEE 225


>tr|Q9ZSS9|Q9ZSS9_ORYSA 50S ribosomal protein L10 OS=Oryza sativa
           GN=rpl10 PE=2 SV=1
          Length = 220

 Score = 37.7 bits (86), Expect = 0.64
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARD+V  L AYV+KLE+E G+A
Sbjct: 196 QAPARDVVSVLSAYVRKLEQEVGAA 220


>tr|Q10N30|Q10N30_ORYSJ Os03g0284400 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0284400 PE=2 SV=1
          Length = 220

 Score = 37.7 bits (86), Expect = 0.64
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARD+V  L AYV+KLE+E G+A
Sbjct: 196 QAPARDVVSVLSAYVRKLEQEVGAA 220


>tr|B8ALJ1|B8ALJ1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_11062 PE=4 SV=1
          Length = 220

 Score = 37.7 bits (86), Expect = 0.64
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = +1

Query: 1   QAPARDLVLTLKAYVQKLEEEAGSA 75
           QAPARD+V  L AYV+KLE+E G+A
Sbjct: 196 QAPARDVVSVLSAYVRKLEQEVGAA 220