DK951070 |
Clone id |
TST38A01NGRL0010_G14 |
Library |
TST38 |
Length |
401 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_G14. 5' end sequence. |
Accession |
DK951070 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL811Contig1 |
Sequence |
GCAATGCTTTTTTATAATCCCAACTTTGTACACCAAAGTTGGGCAGCGACTGCAGTCCCA TCTAATAACAGTTTGGCAACAACAGTCTCTTCCTCGTCGATATCATCGCTTCTTCCACCA TCTCCAGGGGGTGTCGGATCCTCTACTCTCATTCTTTCGGGTAAGCACACGTCCTCCTCT GTCAGTTTTAGCTCATCTCGTAGAACAAAATGTACCCCAGCCATGGCGGTAGCCCTCCCT GTGCTGACATTCGAGGGGAAGGCCTCCGGCACAGAAGTGGAATTGGACTTGAAGTGTGCT CGACCAGAGACAGCACGTGCTGTGGTGCACAGAGGTTTGATAACGGAGCTACAAAACAAG AGGAGGGGGACTGCTTCGACTCTGACGAGAGGGGAGGTGAG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
O49937 |
Definition |
sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea |
Align length |
57 |
Score (bit) |
74.7 |
E-value |
1.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951070|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_G14, 5' (369 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=S... 75 1e-13 sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=A... 75 1e-13 sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=N... 66 6e-11 sp|Q8DMN0|RL4_THEEB 50S ribosomal protein L4 OS=Thermosynechococ... 54 2e-07 sp|Q318I5|RL4_PROM9 50S ribosomal protein L4 OS=Prochlorococcus ... 54 2e-07 sp|Q7UZU8|RL4_PROMP 50S ribosomal protein L4 OS=Prochlorococcus ... 53 4e-07 sp|A2BTD6|RL4_PROMS 50S ribosomal protein L4 OS=Prochlorococcus ... 53 5e-07 sp|A3PF46|RL4_PROM0 50S ribosomal protein L4 OS=Prochlorococcus ... 53 5e-07 sp|A8G761|RL4_PROM2 50S ribosomal protein L4 OS=Prochlorococcus ... 52 7e-07 sp|A2BYT5|RL4_PROM5 50S ribosomal protein L4 OS=Prochlorococcus ... 50 3e-06 sp|Q46IR0|RL4_PROMT 50S ribosomal protein L4 OS=Prochlorococcus ... 47 2e-05 sp|B0C1D4|RL4_ACAM1 50S ribosomal protein L4 OS=Acaryochloris ma... 47 2e-05 sp|Q7NPG9|RL4_GLOVI 50S ribosomal protein L4 OS=Gloeobacter viol... 47 4e-05 sp|B0JI02|RL4_MICAN 50S ribosomal protein L4 OS=Microcystis aeru... 46 7e-05 sp|Q7U4J9|RL4_SYNPX 50S ribosomal protein L4 OS=Synechococcus sp... 45 9e-05 sp|A5GIU4|RL4_SYNPW 50S ribosomal protein L4 OS=Synechococcus sp... 45 9e-05 sp|Q3AMN1|RL4_SYNSC 50S ribosomal protein L4 OS=Synechococcus sp... 45 1e-04 sp|O24690|RL4_SYNP6 50S ribosomal protein L4 OS=Synechococcus sp... 45 1e-04 sp|Q31L08|RL4_SYNE7 50S ribosomal protein L4 OS=Synechococcus el... 45 1e-04 sp|Q7V9W3|RL4_PROMA 50S ribosomal protein L4 OS=Prochlorococcus ... 45 1e-04 sp|Q0ID06|RL4_SYNS3 50S ribosomal protein L4 OS=Synechococcus sp... 44 2e-04 sp|Q110A8|RL4_TRIEI 50S ribosomal protein L4 OS=Trichodesmium er... 44 3e-04 sp|Q3AUW2|RL4_SYNS9 50S ribosomal protein L4 OS=Synechococcus sp... 43 4e-04 sp|Q2JIM6|RL4_SYNJB 50S ribosomal protein L4 OS=Synechococcus sp... 42 7e-04 sp|Q2JV82|RL4_SYNJA 50S ribosomal protein L4 OS=Synechococcus sp... 42 7e-04 sp|Q7V541|RL4_PROMM 50S ribosomal protein L4 OS=Prochlorococcus ... 42 7e-04 sp|A2CC28|RL4_PROM3 50S ribosomal protein L4 OS=Prochlorococcus ... 42 7e-04 sp|Q3MFC0|RL4_ANAVT 50S ribosomal protein L4 OS=Anabaena variabi... 42 0.001 sp|Q8YPI0|RL4_ANASP 50S ribosomal protein L4 OS=Anabaena sp. (st... 42 0.001 sp|P73319|RL4_SYNY3 50S ribosomal protein L4 OS=Synechocystis sp... 39 0.006
>sp|O49937|RK4_SPIOL 50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea GN=RPL4 PE=1 SV=1 Length = 293
Score = 74.7 bits (182), Expect = 1e-13 Identities = 40/57 (70%), Positives = 44/57 (77%) Frame = +2
Query: 197 VALPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 + LP+L F G+ G E L+LK A PE ARAVVHRGLIT LQNKRRGTASTLTR EV Sbjct: 53 IPLPILNFSGEKVG-ETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEV 108
>sp|O50061|RK4_ARATH 50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana GN=RPL4 PE=2 SV=2 Length = 282
Score = 74.7 bits (182), Expect = 1e-13 Identities = 38/55 (69%), Positives = 45/55 (81%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 LP+L+FEG+ G E LDLK A +TARAVVHR ++T+L NKRRGTASTLTRGEV Sbjct: 54 LPILSFEGEKVG-ETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEV 107
>sp|O80361|RK4_TOBAC 50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum GN=RPL4 PE=2 SV=1 Length = 282
Score = 65.9 bits (159), Expect = 6e-11 Identities = 34/55 (61%), Positives = 44/55 (80%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 +P+L+F+G G+ L+LK A +TARAVVHRGL T+L+N+RRGTASTLTR EV Sbjct: 48 IPILSFDGAEVGSTT-LNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEV 101
>sp|Q8DMN0|RL4_THEEB 50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplD PE=3 SV=1 Length = 210
Score = 54.3 bits (129), Expect = 2e-07 Identities = 30/57 (52%), Positives = 37/57 (64%) Frame = +2
Query: 197 VALPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 VA V ++G SG E LDL A+PETA +VHR L+ +L N R+GT ST TR EV Sbjct: 2 VACVVKDWQGADSG-EATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEV 57
>sp|Q318I5|RL4_PROM9 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9312) GN=rplD PE=3 SV=1 Length = 210
Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/55 (49%), Positives = 40/55 (72%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 + L ++GK SG EV+LDL A+ ++ ++HR ++ +L NKR+GTASTLTR EV Sbjct: 4 IETLKWDGKKSG-EVKLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEV 57
>sp|Q7UZU8|RL4_PROMP 50S ribosomal protein L4 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1378 / MED4) GN=rplD PE=3 SV=1 Length = 210
Score = 53.1 bits (126), Expect = 4e-07 Identities = 26/55 (47%), Positives = 40/55 (72%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 L L ++GK +G +V +DLK A+ ++ ++HR ++ +L NKR+GTASTLTR EV Sbjct: 4 LETLKWDGKKAG-KVSIDLKVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEV 57
>sp|A2BTD6|RL4_PROMS 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain AS9601) GN=rplD PE=3 SV=1 Length = 210
Score = 52.8 bits (125), Expect = 5e-07 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 L L ++GK SG +V LDL A+ ++ ++HR ++ +L NKR+GTASTLTR EV Sbjct: 4 LETLKWDGKKSG-KVSLDLAVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEV 57
>sp|A3PF46|RL4_PROM0 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9301) GN=rplD PE=3 SV=1 Length = 210
Score = 52.8 bits (125), Expect = 5e-07 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 L L ++GK SG +V LDL A+ ++ ++HR ++ +L NKR+GTASTLTR EV Sbjct: 4 LETLKWDGKKSG-KVSLDLAVAKKTSSADLIHRAVLRQLANKRQGTASTLTRSEV 57
>sp|A8G761|RL4_PROM2 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9215) GN=rplD PE=3 SV=1 Length = 210
Score = 52.4 bits (124), Expect = 7e-07 Identities = 27/55 (49%), Positives = 39/55 (70%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 L L ++GK SG +V LDL A+ ++ ++HR ++ +L NKR+GTASTLTR EV Sbjct: 4 LETLKWDGKKSG-KVTLDLTVAKETSSADLIHRAVLRQLANKRQGTASTLTRSEV 57
>sp|A2BYT5|RL4_PROM5 50S ribosomal protein L4 OS=Prochlorococcus marinus (strain MIT 9515) GN=rplD PE=3 SV=1 Length = 210
Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/55 (45%), Positives = 39/55 (70%) Frame = +2
Query: 203 LPVLTFEGKASGTEVELDLKCARPETARAVVHRGLITELQNKRRGTASTLTRGEV 367 L L ++GK G +V +DLK A+ ++ ++HR ++ +L N+R+GTASTLTR EV Sbjct: 4 LETLKWDGKKVG-KVSIDLKVAKETSSSDLIHRAVLRQLANQRQGTASTLTRSEV 57
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NU11 |
Definition |
tr|A9NU11|A9NU11_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
66 |
Score (bit) |
95.1 |
E-value |
2.0e-18 |
Report |
|