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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951076
Clone id TST38A01NGRL0010_G21
Library
Length 377
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_G21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAAGATGGCGCTTCCCTCTCTGTGTACTTGTTTCCCCTCTTTTCCAAGTCTCTTTCATT
AAAATTTTCTTGTTTCTATCCCAGCGCTCTTGTTCGTTCACTGGTTAGCCTTCTCATTTT
GGGCATTTTTGGATTTGGTCCGTCAATTCTCTTCACTTTGTGCATAGCCCAGCTGTCCTT
CTTCTCTTCTATTTGCTTAATCTTACTCTGTTTTTCTCTGTTTTTTGTTAGGATTTCGAA
GCTAGACTGTATTTTACTTTTCAATCCCTCTCTTTCCTGCTTTTTAAGTCGTCAATATTA
AGACAATGATAGTCCACCAGCTATGGAGATTTCCAAGGGATGCAACAGACTTGGCGGCTC
TGCTTGTTTTTTTTTTT
■■Homology search results ■■ -
sp_hit_id A6NDK9
Definition sp|A6NDK9|GOG6C_HUMAN Golgin subfamily A member 6C OS=Homo sapiens
Align length 47
Score (bit) 29.6
E-value 4.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951076|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_G21, 5'
         (377 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6NDK9|GOG6C_HUMAN Golgin subfamily A member 6C OS=Homo sapie...    30   4.8  
sp|Q9NYA3|GOG6A_HUMAN Golgin subfamily A member 6A OS=Homo sapie...    30   4.8  
sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4 OS=Aspergi...    29   8.3  
sp|Q290J8|PIGV_DROPS GPI mannosyltransferase 2 OS=Drosophila pse...    29   8.3  

>sp|A6NDK9|GOG6C_HUMAN Golgin subfamily A member 6C OS=Homo sapiens
           GN=GOLGA6C PE=3 SV=1
          Length = 693

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -3

Query: 375 KKKQAEPPSLLHPLEISIAGGLSLS*Y*RLKKQEREGLKSKIQSSFE 235
           K + AEPPSL  P   S+   L      +  +QE EGL+ K+QS  E
Sbjct: 279 KNQMAEPPSLAPPAVTSVVEQLQDEA--KHLRQEVEGLEGKLQSQVE 323


>sp|Q9NYA3|GOG6A_HUMAN Golgin subfamily A member 6A OS=Homo sapiens
           GN=GOLGA6 PE=1 SV=3
          Length = 693

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 19/47 (40%), Positives = 25/47 (53%)
 Frame = -3

Query: 375 KKKQAEPPSLLHPLEISIAGGLSLS*Y*RLKKQEREGLKSKIQSSFE 235
           K + AEPPSL  P   S+   L      +  +QE EGL+ K+QS  E
Sbjct: 279 KNQMAEPPSLAPPAVTSVVEQLQDEA--KHLRQEVEGLEGKLQSQVE 323


>sp|A1CL59|SPB4_ASPCL ATP-dependent rRNA helicase spb4
           OS=Aspergillus clavatus GN=spb4 PE=3 SV=1
          Length = 639

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -3

Query: 132 PKMPKMRRLTSERTRALG*KQENFNERD--LEKRGNKYTEREAPS 4
           PKMP++R  T ++T  +    +NF+ +D   EKR  +  +  A S
Sbjct: 497 PKMPELRSFTGDKTLGVSLDWDNFSYKDKQREKRRKELLQEAAES 541


>sp|Q290J8|PIGV_DROPS GPI mannosyltransferase 2 OS=Drosophila
           pseudoobscura pseudoobscura GN=veg PE=3 SV=1
          Length = 452

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 63  NFLVSIPALLFVHWLAFSF 119
           NFL+++P LLF+HW  + +
Sbjct: 329 NFLLALPMLLFMHWHCYDY 347
tr_hit_id B7WT23
Definition tr|B7WT23|B7WT23_COMTE Fatty acid desaturase OS=Comamonas testosteroni KF-1
Align length 46
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951076|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_G21, 5'
         (377 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7WT23|B7WT23_COMTE Fatty acid desaturase OS=Comamonas testos...    35   1.8  
tr|A1TSQ1|A1TSQ1_ACIAC Fatty acid desaturase OS=Acidovorax avena...    34   3.1  
tr|B1Y0N4|B1Y0N4_LEPCP Fatty acid desaturase OS=Leptothrix cholo...    33   9.2  

>tr|B7WT23|B7WT23_COMTE Fatty acid desaturase OS=Comamonas
           testosteroni KF-1 GN=CtesDRAFT_PD4132 PE=4 SV=1
          Length = 406

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +1

Query: 7   WRFPLCVLVSPLFQVSFIKIFLFLSQ--RSCSFTG*PSHFGHFWIW 138
           W+  L  L++  F ++ + IFL  SQ  R+      PSHF  FW+W
Sbjct: 26  WQLLLYTLITTHFTIAGVTIFLHRSQAHRALDLGPVPSHFFRFWLW 71


>tr|A1TSQ1|A1TSQ1_ACIAC Fatty acid desaturase OS=Acidovorax avenae
           subsp. citrulli (strain AAC00-1) GN=Aave_3432 PE=4 SV=1
          Length = 404

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +1

Query: 7   WRFPLCVLVSPLFQVSFIKIFLFLSQ--RSCSFTG*PSHFGHFWIW 138
           W   L  LV+    ++ + IFL  +Q  RS      PSHF  FW+W
Sbjct: 26  WEIVLYTLVTTHITIAAVTIFLHRAQAHRSVDLGAVPSHFFRFWLW 71


>tr|B1Y0N4|B1Y0N4_LEPCP Fatty acid desaturase OS=Leptothrix
           cholodnii (strain ATCC 51168 / LMG 8142 / SP-6)
           GN=Lcho_0742 PE=4 SV=1
          Length = 407

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +1

Query: 7   WRFPLCVLVSPLFQVSFIKIFLFLSQ--RSCSFTG*PSHFGHFWIWSVNSL 153
           W+  +  LV     ++ + I+L  SQ  RS      PSHF  FW+W    +
Sbjct: 25  WQILVVTLVFTHLTIAAVTIYLHRSQAHRSLDLHAIPSHFFRFWLWMTTGM 75