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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951099
Clone id TST38A01NGRL0010_H21
Library
Length 593
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_H21. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GTCGTCTGCAACATTACCAAAGATCGCCATCGCCCAAAACTAAGTGTTGCTGCAGCAGAG
GTTTTGCCCTCCTCTTGTTCTAAAAGGGGCATCGGGACAATGGATTTGTGGTGATCTCTA
GGGTTCGCACTTCATGGAAAACCTGGCTGCGATGCCACACTTCGTCACAAAAAATATGGA
ACCTGATTTTCTTGGCCTAGGGTTGTCGCTTCCCCCGCTTTCATGGTTGGATGTTCGGGT
CTTTTATGTGAGGCTGAGCTGCTGCTCACTTGATGATGCACCGGACACTCTGACAATTAA
ATTTGGTCCCAGGCCTATTGCCTGCACCTTTGAAATCAACGGATGCAAAGTTCCTGCCTC
TTTTTTTTTCCCCCCCCCCCCCGCAGGGATAGAGTCGATAAAAAAAAAAGGGGGGTGGGN
TNTGTTGGANTGGATAGACTTCGCACCACAGGTTCATTGTCCTTTGAAGTTTGTCATAAA
GAAGAAACCCTTATTTGTGGAGCTATGGAAAATACAGAGGTATGGCTAGATGGACAAGGT
ATTGGCAGGATTGGTGCTGTTGGTACCCTTAACAAAAGGTACAAAGCAGAGTG
■■Homology search results ■■ -
sp_hit_id Q8PBH8
Definition sp|Q8PBH8|ATE_XANCP Putative arginyl-tRNA--protein transferase OS=Xanthomonas campestris pv. campestris
Align length 47
Score (bit) 30.4
E-value 7.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951099|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_H21, 5'
         (593 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8PBH8|ATE_XANCP Putative arginyl-tRNA--protein transferase O...    30   7.0  
sp|Q4US26|ATE_XANC8 Putative arginyl-tRNA--protein transferase O...    30   7.0  

>sp|Q8PBH8|ATE_XANCP Putative arginyl-tRNA--protein transferase
           OS=Xanthomonas campestris pv. campestris GN=ate PE=3
           SV=1
          Length = 252

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 345 HPLISKVQAIGLGPNLIVRVSGASSSEQQLSLT*KTRTSNHESGGSD 205
           HP  S+ + +    +L+VRV  A  +E+QL+L  +     H  GG D
Sbjct: 82  HPDRSQRRCLARNQDLVVRVVAAERTEEQLALYRQYLQHRHPGGGMD 128


>sp|Q4US26|ATE_XANC8 Putative arginyl-tRNA--protein transferase
           OS=Xanthomonas campestris pv. campestris (strain 8004)
           GN=ate PE=3 SV=1
          Length = 252

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -3

Query: 345 HPLISKVQAIGLGPNLIVRVSGASSSEQQLSLT*KTRTSNHESGGSD 205
           HP  S+ + +    +L+VRV  A  +E+QL+L  +     H  GG D
Sbjct: 82  HPDRSQRRCLARNQDLVVRVVAAERTEEQLALYRQYLQHRHPGGGMD 128
tr_hit_id A9SBR1
Definition tr|A9SBR1|A9SBR1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 46
Score (bit) 56.2
E-value 3.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951099|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_H21, 5'
         (593 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SBR1|A9SBR1_PHYPA Predicted protein OS=Physcomitrella paten...    56   3e-14
tr|A9NUE2|A9NUE2_PICSI Putative uncharacterized protein OS=Picea...    51   4e-12
tr|A9P1C5|A9P1C5_PICSI Putative uncharacterized protein OS=Picea...    50   7e-10
tr|A9T096|A9T096_PHYPA Predicted protein OS=Physcomitrella paten...    55   5e-09
tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana G...    52   6e-08
tr|Q8L9M0|Q8L9M0_ARATH Putative uncharacterized protein OS=Arabi...    52   6e-08
tr|Q8GUH2|Q8GUH2_ARATH Expressed protein (Putative uncharacteriz...    52   6e-08
tr|A7PZJ0|A7PZJ0_VITVI Chromosome chr15 scaffold_40, whole genom...    48   1e-07
tr|O23703|O23703_ARATH Putative uncharacterized protein OS=Arabi...    51   2e-07
tr|O03988|O03988_ARATH Putative uncharacterized protein (Fragmen...    47   3e-06
tr|Q8H8N0|Q8H8N0_ORYSJ Putative uncharacterized protein OSJNBa00...    42   7e-04
tr|A7P916|A7P916_VITVI Chromosome chr3 scaffold_8, whole genome ...    43   7e-04
tr|Q10DL9|Q10DL9_ORYSJ Os03g0775600 protein OS=Oryza sativa subs...    42   7e-04
tr|B8AKK9|B8AKK9_ORYSI Putative uncharacterized protein OS=Oryza...    42   7e-04
tr|A7NTC9|A7NTC9_VITVI Chromosome chr18 scaffold_1, whole genome...    37   7e-04
tr|Q10DL7|Q10DL7_ORYSJ cDNA clone:002-102-B02, full insert seque...    42   7e-04
tr|Q9LN54|Q9LN54_ARATH F18O14.16 OS=Arabidopsis thaliana PE=4 SV=1     38   0.002
tr|Q8VYC6|Q8VYC6_ARATH Putative uncharacterized protein At1g1940...    38   0.002
tr|A5B6C8|A5B6C8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.004
tr|A9U3I7|A9U3I7_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.034
tr|B7FIZ3|B7FIZ3_MEDTR Putative uncharacterized protein (Fragmen...    40   0.077
tr|B7FIE6|B7FIE6_MEDTR Putative uncharacterized protein (Fragmen...    40   0.077
tr|Q9FRK9|Q9FRK9_ARATH Putative uncharacterized protein F22H5.9 ...    33   0.12 
tr|Q8VXX6|Q8VXX6_ARATH Putative uncharacterized protein At1g7518...    33   0.12 
tr|Q8LEK6|Q8LEK6_ARATH Putative uncharacterized protein OS=Arabi...    33   0.12 
tr|Q8H0Z2|Q8H0Z2_ARATH Putative uncharacterized protein At1g7518...    33   0.12 
tr|B6TBZ5|B6TBZ5_MAIZE Putative uncharacterized protein OS=Zea m...    28   1.9  
tr|B4FXF3|B4FXF3_MAIZE Putative uncharacterized protein OS=Zea m...    28   1.9  
tr|B3MNE7|B3MNE7_DROAN GF15640 OS=Drosophila ananassae GN=GF1564...    35   2.5  
tr|A8P8S9|A8P8S9_COPC7 Putative uncharacterized protein OS=Copri...    35   3.2  

>tr|A9SBR1|A9SBR1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_127192 PE=4 SV=1
          Length = 316

 Score = 56.2 bits (134), Expect(2) = 3e-14
 Identities = 24/46 (52%), Positives = 32/46 (69%)
 Frame = +2

Query: 224 WLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVPAS 361
           W DVRV YVR++ C LDDAP++LTI+F  R I    E+NG ++  S
Sbjct: 25  WFDVRVIYVRVTECPLDDAPESLTIRFPARSIGTALEVNGARISPS 70



 Score = 46.2 bits (108), Expect(2) = 3e-14
 Identities = 23/49 (46%), Positives = 30/49 (61%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTEVWLDGQGIGRIGAVGTLNKRYK 585
           LRT+GSL FEV HKEE L+CGA+E ++   D +      A+ T  K  K
Sbjct: 97  LRTSGSLKFEVLHKEEVLLCGALEQSQPAADAEEYKGSEAISTPEKTTK 145


>tr|A9NUE2|A9NUE2_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 324

 Score = 50.8 bits (120), Expect(2) = 4e-12
 Identities = 20/44 (45%), Positives = 30/44 (68%)
 Frame = +2

Query: 224 WLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVP 355
           W +VR+FYVR+S C L+ AP +LT++   R +    EING ++P
Sbjct: 40  WFEVRLFYVRVSSCPLEGAPQSLTLRHHHRTVGVALEINGTRIP 83



 Score = 44.3 bits (103), Expect(2) = 4e-12
 Identities = 21/36 (58%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEET-LICGAMENTEVWLDGQGI 543
           +RTTG+L FEVC+ EET L+CGA+E  E   D QG+
Sbjct: 112 VRTTGTLDFEVCYDEETLLLCGALERLEQGSDHQGV 147


>tr|A9P1C5|A9P1C5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 309

 Score = 49.7 bits (117), Expect(2) = 7e-10
 Identities = 18/46 (39%), Positives = 29/46 (63%)
 Frame = +2

Query: 224 WLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVPAS 361
           W D++VFY+++  C  D AP +LT+ + PR  +   EING ++  S
Sbjct: 25  WFDIKVFYIKIDACGFDPAPGSLTVHYAPRSSSTELEINGKRIRPS 70



 Score = 37.7 bits (86), Expect(2) = 7e-10
 Identities = 15/23 (65%), Positives = 19/23 (82%)
 Frame = +1

Query: 442 RTTGSLSFEVCHKEETLICGAME 510
           RTTG + F+VC +EETLICG +E
Sbjct: 98  RTTGKVCFDVCVREETLICGTLE 120


>tr|A9T096|A9T096_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_138294 PE=4 SV=1
          Length = 303

 Score = 54.7 bits (130), Expect(2) = 5e-09
 Identities = 23/40 (57%), Positives = 30/40 (75%)
 Frame = +2

Query: 224 WLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEING 343
           W DVRV YVR++ CS ++ PD+LTI+F PR I  T E+NG
Sbjct: 19  WFDVRVIYVRITGCSPEEDPDSLTIRFPPRTIGVTLEVNG 58



 Score = 30.0 bits (66), Expect(2) = 5e-09
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTEVWLD 531
           LR  G++ +EV +KEE ++ G +E+ E  L+
Sbjct: 91  LRICGTICYEVVNKEEVIVSGTLEHVENCLE 121


>tr|Q9LMM9|Q9LMM9_ARATH F22L4.6 protein OS=Arabidopsis thaliana
           GN=F22L4.6 PE=4 SV=1
          Length = 1284

 Score = 52.4 bits (124), Expect(2) = 6e-08
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +2

Query: 158 HFVTKNMEPDFXXXXXXXXXXXWLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEI 337
           H  T  + P             WL+VR+FYVR++ C +++ PD LT++   R    + E+
Sbjct: 20  HMNTSTVSPPSPASSISLSQSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEV 79

Query: 338 NGCKVPAS 361
           NG +VP+S
Sbjct: 80  NGVRVPSS 87



 Score = 28.5 bits (62), Expect(2) = 6e-08
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDG 534
           +R TG + FEV   E+ ++CG ++  E  W +G
Sbjct: 114 VRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNG 146


>tr|Q8L9M0|Q8L9M0_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 327

 Score = 52.4 bits (124), Expect(2) = 6e-08
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +2

Query: 158 HFVTKNMEPDFXXXXXXXXXXXWLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEI 337
           H  T  + P             WL+VR+FYVR++ C +++ PD LT++   R    + E+
Sbjct: 20  HMNTSTVSPPSPASSISLSQSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEV 79

Query: 338 NGCKVPAS 361
           NG +VP+S
Sbjct: 80  NGVRVPSS 87



 Score = 28.5 bits (62), Expect(2) = 6e-08
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDG 534
           +R TG + FEV   E+ ++CG ++  E  W +G
Sbjct: 114 VRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNG 146


>tr|Q8GUH2|Q8GUH2_ARATH Expressed protein (Putative uncharacterized
           protein At1g01500) (At1g01500) OS=Arabidopsis thaliana
           GN=At1g01500 PE=2 SV=1
          Length = 327

 Score = 52.4 bits (124), Expect(2) = 6e-08
 Identities = 23/68 (33%), Positives = 37/68 (54%)
 Frame = +2

Query: 158 HFVTKNMEPDFXXXXXXXXXXXWLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEI 337
           H  T  + P             WL+VR+FYVR++ C +++ PD LT++   R    + E+
Sbjct: 20  HMNTSTVSPPSPASSISLSQSAWLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEV 79

Query: 338 NGCKVPAS 361
           NG +VP+S
Sbjct: 80  NGVRVPSS 87



 Score = 28.5 bits (62), Expect(2) = 6e-08
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDG 534
           +R TG + FEV   E+ ++CG ++  E  W +G
Sbjct: 114 VRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNG 146


>tr|A7PZJ0|A7PZJ0_VITVI Chromosome chr15 scaffold_40, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026897001
           PE=4 SV=1
          Length = 266

 Score = 47.8 bits (112), Expect(2) = 1e-07
 Identities = 21/45 (46%), Positives = 31/45 (68%)
 Frame = +2

Query: 227 LDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVPAS 361
           L++R+FYVR++ C +D  PD LT+    R I  + EING ++PAS
Sbjct: 37  LEIRLFYVRIAPCVIDSVPDHLTLCHIRRGIGVSLEINGARIPAS 81



 Score = 32.3 bits (72), Expect(2) = 1e-07
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDGQ 537
           +R  G + FEV  KEE ++CG++E  E  W +G+
Sbjct: 108 VRVAGGVEFEVYEKEEMILCGSLERMESSWGNGK 141


>tr|O23703|O23703_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 311

 Score = 50.8 bits (120), Expect(2) = 2e-07
 Identities = 20/46 (43%), Positives = 33/46 (71%)
 Frame = +2

Query: 224 WLDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVPAS 361
           WL+VR+FYVR++ C +++ PD LT++   R    + E+NG +VP+S
Sbjct: 22  WLEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSS 67



 Score = 28.5 bits (62), Expect(2) = 2e-07
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDG 534
           +R TG + FEV   E+ ++CG ++  E  W +G
Sbjct: 94  VRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNG 126


>tr|O03988|O03988_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 277

 Score = 46.6 bits (109), Expect(2) = 3e-06
 Identities = 19/45 (42%), Positives = 32/45 (71%)
 Frame = +2

Query: 227 LDVRVFYVRLSCCSLDDAPDTLTIKFGPRPIACTFEINGCKVPAS 361
           L+VR+FYVR++ C +++ PD LT++   R    + E+NG +VP+S
Sbjct: 1   LEVRLFYVRIAPCVVENVPDFLTLRHPRRETGASLEVNGVRVPSS 45



 Score = 28.5 bits (62), Expect(2) = 3e-06
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 439 LRTTGSLSFEVCHKEETLICGAMENTE-VWLDG 534
           +R TG + FEV   E+ ++CG ++  E  W +G
Sbjct: 72  VRVTGCVDFEVYDNEDMVLCGNLDRIEGAWNNG 104