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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951104
Clone id TST38A01NGRL0010_I02
Library
Length 283
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_I02. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
GCGAATTGAATTTAGCGGCCGCGAATTCGCCCTTATTGATGGTGCCTACAGTCACAAGTT
AGGGTCTCAGGGATTTCAGGTGCCTACAGTAAGAGGGAGACCCAGGCTCGGATTTCAGGT
GCCTACAGGGTACAATCAACGGTCGATGGTTTTCAGGGGCCTACAGTGTAGGAGGACGAG
GCCTTCGATTTCAGGGGCCTACAGTGCAGGGGCGGTTCTACGGGTGTTTCAGGTGCCTAC
CGACAACGAGCTCTATGACATTTCACTGGCCGTCGTTTTACAA
■■Homology search results ■■ -
sp_hit_id Q5XI50
Definition sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus
Align length 79
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951104|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I02, 5'
         (227 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus...    33   0.34 
sp|Q0P5G4|KAT3_BOVIN Kynurenine--oxoglutarate transaminase 3 OS=...    30   2.9  
sp|Q96G01|BICD1_HUMAN Protein bicaudal D homolog 1 OS=Homo sapie...    30   2.9  
sp|Q2YAX8|RL15_NITMU 50S ribosomal protein L15 OS=Nitrosospira m...    29   8.5  

>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus
           norvegicus GN=March7 PE=2 SV=1
          Length = 692

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
 Frame = +1

Query: 1   IDGAYSHKLGSQGFQVPTVRGRPRLGF-------QVPTGYNQRSMVFRGLQCRRTRPSIS 159
           ++ + +H+L S+   VP+ R   R  F       Q  +  N     F  L  R   P+IS
Sbjct: 198 LNSSTNHQLPSEHQTVPSSRDSSRSSFRSHFSPRQSESFRNSSHPAFSYLSSRNETPTIS 257

Query: 160 GAYSAGAVLRVFQVPTDNE 216
            +  AG+  R FQ  +DNE
Sbjct: 258 SSERAGSSQRPFQESSDNE 276


>sp|Q0P5G4|KAT3_BOVIN Kynurenine--oxoglutarate transaminase 3 OS=Bos
           taurus GN=CCBL2 PE=2 SV=1
          Length = 455

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -2

Query: 226 CHRARCR*APETPVEPPLHCRPLKSK--ASSSYTVGP 122
           C+ +  R A  TPV  PL C+P+  K  +SS +T+ P
Sbjct: 161 CYESMVRMAGATPVFVPLRCKPVDGKKCSSSDWTLDP 197


>sp|Q96G01|BICD1_HUMAN Protein bicaudal D homolog 1 OS=Homo sapiens
            GN=BICD1 PE=1 SV=3
          Length = 975

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 24/69 (34%), Positives = 32/69 (46%)
 Frame = +1

Query: 16   SHKLGSQGFQVPTVRGRPRLGFQVPTGYNQRSMVFRGLQCRRTRPSISGAYSAGAVLRVF 195
            ++ L SQG Q P +R        V +G  QR   F    C ++RP  SGA     +LRV 
Sbjct: 834  TYLLHSQGPQTPNIR--------VSSG-TQRKRQFSPSLCDQSRPRTSGASYLQNLLRVP 884

Query: 196  QVPTDNELY 222
              PT  E +
Sbjct: 885  PDPTSTESF 893


>sp|Q2YAX8|RL15_NITMU 50S ribosomal protein L15 OS=Nitrosospira
           multiformis (strain ATCC 25196 / NCIMB 11849) GN=rplO
           PE=3 SV=1
          Length = 143

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 19  HKLGSQGFQVPTVRGRPRLGFQVPTGYN 102
           HK+G +G Q+P  R  P+ GF  PT  N
Sbjct: 46  HKVGFEGGQMPLQRRLPKRGFVSPTKKN 73
tr_hit_id Q70V07
Definition tr|Q70V07|Q70V07_PSEPU Vanillin dehydrogenase OS=Pseudomonas putida
Align length 63
Score (bit) 36.2
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951104|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I02, 5'
         (227 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q70V07|Q70V07_PSEPU Vanillin dehydrogenase OS=Pseudomonas put...    36   0.84 
tr|O54034|O54034_PSEPU Vanillin dehydrogenase OS=Pseudomonas put...    35   2.4  
tr|B2KG46|B2KG46_MOUSE Bicaudal D homolog 1 (Drosophila) OS=Mus ...    33   5.5  
tr|Q4ZSV6|Q4ZSV6_PSEU2 Aldehyde dehydrogenase OS=Pseudomonas syr...    33   5.5  
tr|B1J760|B1J760_PSEPW Aldehyde Dehydrogenase_ OS=Pseudomonas pu...    33   5.5  
tr|Q88HJ9|Q88HJ9_PSEPK Vanillin dehydrogenase OS=Pseudomonas put...    33   7.1  
tr|A5W330|A5W330_PSEP1 Aldehyde dehydrogenase OS=Pseudomonas put...    33   7.1  
tr|Q48IZ9|Q48IZ9_PSE14 Vanillin dehydrogenase OS=Pseudomonas syr...    33   9.3  

>tr|Q70V07|Q70V07_PSEPU Vanillin dehydrogenase OS=Pseudomonas putida
           GN=vdh PE=4 SV=1
          Length = 485

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG----GSTGVSGA 203
           G+S A   R+TQ  ++ A R++S +    GPTV ++    F G++  G    GST    A
Sbjct: 408 GLSAAIFSRDTQRALALAQRLESGICHINGPTVHDEAQMPFGGVKASGYGSFGSTAAIDA 467

Query: 204 YRQ 212
           + Q
Sbjct: 468 FTQ 470


>tr|O54034|O54034_PSEPU Vanillin dehydrogenase OS=Pseudomonas putida
           GN=vdh PE=4 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG----GSTGVSGA 203
           G+S A   R+TQ  ++ A R++S +    GPTV ++    F G++  G    G T    A
Sbjct: 403 GLSAAIFSRDTQRALALAQRLESGICHINGPTVHDEATMPFGGVKASGFGRFGRTAAIDA 462

Query: 204 YRQ 212
           + Q
Sbjct: 463 FTQ 465


>tr|B2KG46|B2KG46_MOUSE Bicaudal D homolog 1 (Drosophila) OS=Mus
            musculus GN=Bicd1 PE=4 SV=1
          Length = 975

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 25/69 (36%), Positives = 34/69 (49%)
 Frame = +1

Query: 16   SHKLGSQGFQVPTVRGRPRLGFQVPTGYNQRSMVFRGLQCRRTRPSISGAYSAGAVLRVF 195
            ++ L SQG Q+PT+R        V +G  QR   F    C ++RP  SGA     +LRV 
Sbjct: 834  TYLLHSQGPQIPTIR--------VSSG-TQRKRQFSPSLCDQSRPRTSGASYLQNLLRVP 884

Query: 196  QVPTDNELY 222
              PT  E +
Sbjct: 885  PDPTSTESF 893


>tr|Q4ZSV6|Q4ZSV6_PSEU2 Aldehyde dehydrogenase OS=Pseudomonas
           syringae pv. syringae (strain B728a) GN=Psyr_2727 PE=4
           SV=1
          Length = 482

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG-GSTGVSGAYRQ 212
           G+S A   R+T   ++ A RV+S +    GPTV ++    F G++  G GS G   +  Q
Sbjct: 405 GLSAAIFSRDTSRALALAQRVESGICHINGPTVHDEAQMPFGGVKSSGYGSFGGKASIEQ 464


>tr|B1J760|B1J760_PSEPW Aldehyde Dehydrogenase_ OS=Pseudomonas
           putida (strain W619) GN=PputW619_2048 PE=4 SV=1
          Length = 482

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG-GSTGVSGAYRQ 212
           G+S A   R+T   ++ A RV+S +    GPTV ++    F G++  G GS G   A  Q
Sbjct: 405 GLSSAIFSRDTSRALALAQRVESGICHINGPTVHDEAQMPFGGVKASGYGSFGSRTAIDQ 464


>tr|Q88HJ9|Q88HJ9_PSEPK Vanillin dehydrogenase OS=Pseudomonas putida
           (strain KT2440) GN=vdh PE=4 SV=1
          Length = 482

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG-GSTGVSGAYRQ 212
           G+S A   R+T   ++ A RV+S +    GPTV ++    F G++  G GS G   A  Q
Sbjct: 405 GLSSAIFSRDTSRALALAQRVESGICHINGPTVHDEAQMPFGGVKSSGYGSFGSRTAIDQ 464


>tr|A5W330|A5W330_PSEP1 Aldehyde dehydrogenase OS=Pseudomonas putida
           (strain F1 / ATCC 700007) GN=Pput_2401 PE=4 SV=1
          Length = 482

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG-GSTGVSGAYRQ 212
           G+S A   R+T   ++ A RV+S +    GPTV ++    F G++  G GS G   A  Q
Sbjct: 405 GLSSAIFSRDTSRALALAQRVESGICHINGPTVHDEAQMPFGGVKSSGYGSFGSRTAIDQ 464


>tr|Q48IZ9|Q48IZ9_PSE14 Vanillin dehydrogenase OS=Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6) GN=vdh
           PE=4 SV=1
          Length = 482

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 36  GISGAYSKRETQARISGAYRVQSTVDGFQGPTV*EDEAFDFRGLQCRG-GSTG 191
           G+S A   R+T   ++ A RV+S +    GPTV ++    F G++  G GS G
Sbjct: 405 GLSAAIFSRDTSRALALAQRVESGICHINGPTVHDEAQMPFGGVKSSGYGSFG 457