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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951109
Clone id TST38A01NGRL0010_I08
Library
Length 674
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_I08. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GGACGTGGTGCATCAGGAGGAAGTTGTACTGACCCTCACCAATGCTCTTGAAACGGGAAA
TCTTCCGCATCTGCTGTTTTATGGACCCCCTGGCACTGGCAAGACTTCAACAGCTCTAGC
AATCTCACATCAACTATTTGGGCCAGAGCTCTACAAAACTCGGGTTTTGGAGCTGAATGC
TAGTGATGACCGAGGTATTAATGTTGTTCGGACGAAGATAAAAGATTTTGCAGCTGTGGC
TGTTGGACCTGGTGTAAGTGGTTACCCTTGTCCACCATTCAAGATTATCATATTAGATGA
AGCAGACTCCATGACAGAAGATGCACAGAATGCTCTAAGGCGCACTATGGAAACATACTC
CAAAGTCACGCGCTTTTGTTTTATCTGCAATTATGTGAGCAGGATCATTGAGCCCTTAAC
ATCCAGGTGTGCTAAATTTAGATTTAAGCCTCTTCTTGACAATATGCTGAGTAGCCGCAT
CCAATTTATTTGCCGAGAAGAAGGGCTTTCTCTGGACTCAGAGGCTCTGACAACCTTGAA
CCATGTGTCCGAGGGAGATATGCGACGAGCAATCACTTACTTGCAGGGTGCAGCACGCCT
GTATGGCTCAAGTCTCTCATCTGATAACATCATCAGCATATCAAGGGTGGTTTCAGATAA
TGTCGTTCACTCTT
■■Homology search results ■■ -
sp_hit_id P35249
Definition sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens
Align length 203
Score (bit) 255.0
E-value 2.0e-67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951109|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I08, 5'
         (674 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapi...   255   2e-67
sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus muscu...   252   1e-66
sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosac...   252   1e-66
sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=...   248   2e-65
sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharom...   240   6e-63
sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeospha...   239   7e-63
sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staph...   207   4e-53
sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aerop...   206   9e-53
sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archa...   206   1e-52
sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Py...   206   1e-52
sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Py...   203   6e-52
sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Py...   203   8e-52
sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrob...   202   1e-51
sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfo...   201   4e-51
sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Therm...   198   2e-50
sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Metha...   198   2e-50
sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhab...   196   9e-50
sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Metha...   195   2e-49
sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Metha...   194   5e-49
sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Py...   193   8e-49
sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfo...   192   2e-48
sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Py...   191   3e-48
sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Py...   189   1e-47
sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfo...   189   1e-47
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha...   189   1e-47
sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoa...   188   2e-47
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha...   188   3e-47
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha...   187   3e-47
sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=...   187   6e-47
sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=...   186   1e-46

>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens
           GN=RFC4 PE=1 SV=2
          Length = 363

 Score =  255 bits (651), Expect = 2e-67
 Identities = 130/203 (64%), Positives = 154/203 (75%), Gaps = 1/203 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +V  QEEVV  L  +LE  +LP+LLFYGPPGTGKTST LA + +LFGPEL++ RVLELNA
Sbjct: 51  EVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNA 110

Query: 182 SDDRGINVVRTKIKDFAAVAV-GPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SD+RGI VVR K+K+FA + V G    G PCPPFKI+ILDEADSMT  AQ ALRRTME  
Sbjct: 111 SDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKE 170

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SK TRFC ICNYVSRIIEPLTSRC+KFRFKPL D +   R+  I ++E + +  E +  L
Sbjct: 171 SKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYL 230

Query: 539 NHVSEGDMRRAITYLQGAARLYG 607
             VSEGD+R+AIT+LQ A RL G
Sbjct: 231 VKVSEGDLRKAITFLQSATRLTG 253


>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus
           GN=Rfc4 PE=2 SV=1
          Length = 364

 Score =  252 bits (644), Expect = 1e-66
 Identities = 128/203 (63%), Positives = 154/203 (75%), Gaps = 1/203 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +V  Q+EVV  L  +LE  +LP+LLFYGPPGTGKTST LA + +LFGPEL++ RVLELNA
Sbjct: 51  EVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNA 110

Query: 182 SDDRGINVVRTKIKDFAAVAV-GPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SD+RGI VVR K+K+FA + V G    G PCPPFKI+ILDEADSMT  AQ ALRRTME  
Sbjct: 111 SDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKE 170

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SK TRFC ICNYVSRIIEPLTSRC+KFRFKPL D +   R+  I  +E + + +E +  L
Sbjct: 171 SKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYL 230

Query: 539 NHVSEGDMRRAITYLQGAARLYG 607
             +SEGD+R+AIT+LQ A RL G
Sbjct: 231 VKISEGDLRKAITFLQSATRLTG 253


>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2
           OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1
          Length = 340

 Score =  252 bits (643), Expect = 1e-66
 Identities = 120/200 (60%), Positives = 155/200 (77%)
 Frame = +2

Query: 5   VVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNAS 184
           V  QE  V  L   L + NLPH+LFYG PGTGKTST LA+S +LFGP+L K+RVLELNAS
Sbjct: 33  VSSQESTVQVLKKTLLSNNLPHMLFYGSPGTGKTSTILALSRELFGPQLMKSRVLELNAS 92

Query: 185 DDRGINVVRTKIKDFAAVAVGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETYSK 364
           D+RGI+++R K+K FA   V   V GYPCPPFKIIILDEADSMT+DAQ ALRRTME+Y++
Sbjct: 93  DERGISIIREKVKSFAKTTVTNKVDGYPCPPFKIIILDEADSMTQDAQAALRRTMESYAR 152

Query: 365 VTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTLNH 544
           +TRFC ICNY++RII+PL+SRC+K+RFKPL +  +  R++FI  ++ +S++   +  L  
Sbjct: 153 ITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVE 212

Query: 545 VSEGDMRRAITYLQGAARLY 604
            S GDMR+AIT+LQ AA L+
Sbjct: 213 CSGGDMRKAITFLQSAANLH 232


>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4
           OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1
          Length = 347

 Score =  248 bits (633), Expect = 2e-65
 Identities = 127/203 (62%), Positives = 151/203 (74%), Gaps = 2/203 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV +QE+V+  L  +L TGNLPHLLFYGPPGTGKTST LAI+  ++GPEL K RVLELNA
Sbjct: 23  DVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGPELMKQRVLELNA 82

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGVSGYPCP--PFKIIILDEADSMTEDAQNALRRTMET 355
           SD+RGI VVRTKIK+FA  AV    +G   P   FK+IILDEADSMT DAQ ALRRT+ET
Sbjct: 83  SDERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFKLIILDEADSMTTDAQAALRRTIET 142

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
            SK TRFC +CNY+SRII+PL SRCAKFRFKPL       R++FI ++EG+  +      
Sbjct: 143 TSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQA 202

Query: 536 LNHVSEGDMRRAITYLQGAARLY 604
           +  VS GDMR+AITYLQ A R +
Sbjct: 203 IQVVSNGDMRKAITYLQSAFRFF 225


>sp|P40348|RFC2_YEAST Replication factor C subunit 2
           OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1
          Length = 353

 Score =  240 bits (612), Expect = 6e-63
 Identities = 117/203 (57%), Positives = 151/203 (74%), Gaps = 4/203 (1%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +V  Q+  V  L   L++ NLPH+LFYGPPGTGKTST LA++ +L+GP+L K+R+LELNA
Sbjct: 38  EVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNA 97

Query: 182 SDDRGINVVRTKIKDFAAVAVGP----GVSGYPCPPFKIIILDEADSMTEDAQNALRRTM 349
           SD+RGI++VR K+K+FA + V       +  YPCPP+KIIILDEADSMT DAQ+ALRRTM
Sbjct: 98  SDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM 157

Query: 350 ETYSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEAL 529
           ETYS VTRFC ICNYV+RII+PL SRC+KFRFK L  +    R++FI  +E +  D   L
Sbjct: 158 ETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVL 217

Query: 530 TTLNHVSEGDMRRAITYLQGAAR 598
             +  +S GD+RR IT LQ A++
Sbjct: 218 ERILDISAGDLRRGITLLQSASK 240


>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2
           OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1
          Length = 411

 Score =  239 bits (611), Expect = 7e-63
 Identities = 122/222 (54%), Positives = 158/222 (71%), Gaps = 20/222 (9%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +V  Q+  +  L+  L++ NLPH+LFYGPPGTGKTST LA++ QL+GPEL K+RVLELNA
Sbjct: 46  EVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLELNA 105

Query: 182 SDDRGINVVRTKIKDFAA--VAVGPGVS------------------GYPCPPFKIIILDE 301
           SD+RGI++VR K+KDFA   ++V P  +                   Y CPPFKII+LDE
Sbjct: 106 SDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIVLDE 165

Query: 302 ADSMTEDAQNALRRTMETYSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRI 481
           ADSMT+DAQ+ALRRTMETYS++TRFC +CNYV+RII+PL SRC+KFRFK L       R+
Sbjct: 166 ADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRV 225

Query: 482 QFICREEGLSLDSEALTTLNHVSEGDMRRAITYLQGAARLYG 607
             I + E + LD+     L  V++GD+R+AIT+LQ AARL G
Sbjct: 226 DDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVG 267


>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit
           OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639
           / F1) GN=rfcS PE=3 SV=1
          Length = 329

 Score =  207 bits (527), Expect = 4e-53
 Identities = 107/200 (53%), Positives = 141/200 (70%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           ++V QEE+V  L   ++  N+PHLLF GPPGTGKT+ A  ++H LFG E Y+  +LELNA
Sbjct: 24  EIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFG-ENYRQYMLELNA 82

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETYS 361
           SD+RGI+V+R+K+K+FA   V   +      PFKI++LDEAD+MT DAQ ALRR ME Y+
Sbjct: 83  SDERGIDVIRSKVKEFARTRVAANI------PFKIVLLDEADNMTADAQQALRRLMEMYT 136

Query: 362 KVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTLN 541
             TRF  I NY S+IIEP+ SRCA FRF PL    + SR+++I  +E + +D EAL  ++
Sbjct: 137 ATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIH 196

Query: 542 HVSEGDMRRAITYLQGAARL 601
            +SEGDMRRAI  LQ AA L
Sbjct: 197 DLSEGDMRRAINILQAAAAL 216


>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit
           OS=Aeropyrum pernix GN=rfcS PE=3 SV=3
          Length = 325

 Score =  206 bits (524), Expect = 9e-53
 Identities = 107/200 (53%), Positives = 139/200 (69%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           D+V Q+ VV  L   ++  N+PHLLF GPPGTGKT+ A A++H LFG E Y+  +LELNA
Sbjct: 20  DIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFG-ENYRQYMLELNA 78

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETYS 361
           SD+RGINV+R K+K+FA     P +      PFKI++LDEAD+MT DAQ ALRR ME YS
Sbjct: 79  SDERGINVIREKVKEFARSRTPPEI------PFKIVLLDEADNMTSDAQQALRRLMELYS 132

Query: 362 KVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTLN 541
            VTRF  I NY S+II+P+ SRCA FRF+PL    +  R+++I   EG+  + EAL  + 
Sbjct: 133 SVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIY 192

Query: 542 HVSEGDMRRAITYLQGAARL 601
            +SEGDMR+AI  LQ A+ L
Sbjct: 193 EISEGDMRKAINVLQAASYL 212


>sp|O28219|RFCS_ARCFU Replication factor C small subunit
           OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1
          Length = 319

 Score =  206 bits (523), Expect = 1e-52
 Identities = 109/200 (54%), Positives = 139/200 (69%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +VV Q+EV+  L   +E  N+PHLLF GPPGTGKT+TA+A++  LFG E ++   +E+NA
Sbjct: 18  EVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNA 76

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETYS 361
           SD+RGI+VVR KIK+FA  A   G       PFKII LDEAD++T DAQ ALRRTME YS
Sbjct: 77  SDERGIDVVRHKIKEFARTAPIGGA------PFKIIFLDEADALTADAQAALRRTMEMYS 130

Query: 362 KVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTLN 541
           K  RF   CNYVSRIIEP+ SRCA FRFKP+    +  R+  IC +EG+ +  + L  L 
Sbjct: 131 KSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI 190

Query: 542 HVSEGDMRRAITYLQGAARL 601
           ++S GD R+AI  LQGAA +
Sbjct: 191 YISGGDFRKAINALQGAAAI 210


>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1
           OS=Pyrobaculum aerophilum GN=rfcS1 PE=3 SV=1
          Length = 329

 Score =  206 bits (523), Expect = 1e-52
 Identities = 105/199 (52%), Positives = 143/199 (71%), Gaps = 1/199 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           +VV  EEV   L   ++ GN+PHLLFYGPPGTGKT+ AL ++ +L+G E ++   LELNA
Sbjct: 17  EVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYG-EYWRENTLELNA 75

Query: 182 SDDRGINVVRTKIKDFAAVA-VGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SD+RGINV+R ++K+FA  A VG         PFK++ILDEAD+MT DAQ ALRR ME Y
Sbjct: 76  SDERGINVIRERVKEFARTAPVGKA-------PFKLVILDEADNMTSDAQQALRRIMEIY 128

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           ++ TRF  + NYVSRII+P+ SRCA FRF P+  ++++ R++FI + EG+ L  +A+  +
Sbjct: 129 AQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGVELREDAINMI 188

Query: 539 NHVSEGDMRRAITYLQGAA 595
             +SEGDMR+AI  LQ AA
Sbjct: 189 YELSEGDMRKAINLLQVAA 207
tr_hit_id A9SMZ4
Definition tr|A9SMZ4|A9SMZ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 222
Score (bit) 360.0
E-value 6.0e-98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951109|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I08, 5'
         (674 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SMZ4|A9SMZ4_PHYPA Predicted protein OS=Physcomitrella paten...   360   6e-98
tr|A9NSN9|A9NSN9_PICSI Putative uncharacterized protein OS=Picea...   340   5e-92
tr|A7NVH0|A7NVH0_VITVI Chromosome chr18 scaffold_1, whole genome...   338   2e-91
tr|A5BRZ3|A5BRZ3_VITVI Putative uncharacterized protein OS=Vitis...   336   9e-91
tr|B7FK39|B7FK39_MEDTR Putative uncharacterized protein OS=Medic...   335   1e-90
tr|Q93ZX1|Q93ZX1_ARATH Putative replication factor (At1g21690) (...   330   6e-89
tr|Q9FXM3|Q9FXM3_ORYSJ cDNA clone:J033138A02, full insert sequen...   327   5e-88
tr|Q0IPQ0|Q0IPQ0_ORYSJ Os12g0176500 protein (Fragment) OS=Oryza ...   327   5e-88
tr|A2ZIL4|A2ZIL4_ORYSI Putative uncharacterized protein OS=Oryza...   327   5e-88
tr|B6T4T0|B6T4T0_MAIZE Replication factor C subunit 2 OS=Zea may...   323   6e-87
tr|B4FQT5|B4FQT5_MAIZE Putative uncharacterized protein OS=Zea m...   323   6e-87
tr|Q9XI09|Q9XI09_ARATH F8K7.11 protein OS=Arabidopsis thaliana G...   321   2e-86
tr|Q3ED76|Q3ED76_ARATH Uncharacterized protein At1g21690.2 OS=Ar...   310   7e-83
tr|A8HYL2|A8HYL2_CHLRE DNA replication factor C complex subunit ...   296   8e-79
tr|A4S2B7|A4S2B7_OSTLU Predicted protein OS=Ostreococcus lucimar...   263   6e-69
tr|Q28GP1|Q28GP1_XENTR Replication factor C (Activator 1) 4, 37k...   262   1e-68
tr|Q012B7|Q012B7_OSTTA Replication factor C 37 kDa subunit (ISS)...   262   1e-68
tr|A4RN27|A4RN27_MAGGR Putative uncharacterized protein OS=Magna...   262   1e-68
tr|B8MSC7|B8MSC7_9EURO DNA replication factor C subunit Rfc2, pu...   261   3e-68
tr|Q76LD2|Q76LD2_XENLA Replication factor C p37 subunit (RFC2 pr...   260   5e-68
tr|B6QVR4|B6QVR4_PENMA DNA replication factor C subunit Rfc2, pu...   259   1e-67
tr|B3RUC9|B3RUC9_TRIAD Putative uncharacterized protein OS=Trich...   258   2e-67
tr|Q4PI47|Q4PI47_USTMA Putative uncharacterized protein OS=Ustil...   257   4e-67
tr|Q7SH42|Q7SH42_NEUCR Activator 1 41 kDa subunit OS=Neurospora ...   256   7e-67
tr|Q2HAD0|Q2HAD0_CHAGB Putative uncharacterized protein OS=Chaet...   256   1e-66
tr|B4DM41|B4DM41_HUMAN cDNA FLJ60688, highly similar to Replicat...   255   2e-66
tr|Q6MUX7|Q6MUX7_NEUCR Probable replication factor protein OS=Ne...   254   3e-66
tr|Q1DPZ0|Q1DPZ0_COCIM Putative uncharacterized protein OS=Cocci...   254   3e-66
tr|A9V010|A9V010_MONBE Predicted protein OS=Monosiga brevicollis...   254   3e-66
tr|Q5KCE8|Q5KCE8_CRYNE Activator 1 41 kDa subunit, putative OS=C...   254   5e-66

>tr|A9SMZ4|A9SMZ4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_186629 PE=4 SV=1
          Length = 338

 Score =  360 bits (923), Expect = 6e-98
 Identities = 178/222 (80%), Positives = 193/222 (86%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV TLTN LETGNLPHLLFYGPPGTGKT+TALAI HQLFGPELYKTRVLELNA
Sbjct: 22  DVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPELYKTRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGVSGYPCPPFKIIILDEADSMTEDAQNALRRTMETYS 361
           SDDRGINVVRTKIKDFA VAVG GVSGYPCPPFK++ILDEADSMTEDAQNALRRTME YS
Sbjct: 82  SDDRGINVVRTKIKDFAGVAVGAGVSGYPCPPFKVLILDEADSMTEDAQNALRRTMENYS 141

Query: 362 KVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTLN 541
           KVTRFCFICNYVSRIIEPL SRCAKFRFKPLL+N++ +RIQ+IC+EEGL LD EAL+TL+
Sbjct: 142 KVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEGLKLDQEALSTLS 201

Query: 542 HVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVV 667
            VSEGD+RRAIT LQ A RLYG             +V D+V+
Sbjct: 202 RVSEGDLRRAITCLQCAVRLYGSNISSKEIISVSGIVPDSVL 243


>tr|A9NSN9|A9NSN9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 339

 Score =  340 bits (872), Expect = 5e-92
 Identities = 175/226 (77%), Positives = 191/226 (84%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LTN LETGNLPHLLFYGPPGTGKT+TALAI+HQLFGPE YK+RVLELNA
Sbjct: 22  DVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPE-YKSRVLELNA 80

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGV--SGYPCPPFKIIILDEADSMTEDAQNALRRTMET 355
           SDDRGINVVRTKIKDFAAVAVG G   SGY CPPFKIIILDEADSMTEDAQNALRRTMET
Sbjct: 81  SDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDAQNALRRTMET 140

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
           YSKVTRFCFICNYVSRIIEPL SRCAKFRFKPL++++++ RI  IC+EEG+ LDS+ALT 
Sbjct: 141 YSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEGVHLDSDALTM 200

Query: 536 LNHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           L+ +SEGD+RRAITYLQ AARLYG             +V   VV S
Sbjct: 201 LSSISEGDLRRAITYLQSAARLYGSSISSNNLISVSGIVPKEVVQS 246


>tr|A7NVH0|A7NVH0_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015431001
           PE=4 SV=1
          Length = 341

 Score =  338 bits (866), Expect = 2e-91
 Identities = 171/226 (75%), Positives = 191/226 (84%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQ+EVV  LTN LET N PH+LFYGPPGTGKT+TALAI+HQLFGPELYK+RVLELNA
Sbjct: 22  DVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG--VSGYPCPPFKIIILDEADSMTEDAQNALRRTMET 355
           SDDRGINVVRTKIKDFAAVAVG G    GYPCPP+KIIILDEADSMTEDAQNALRRTMET
Sbjct: 82  SDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 141

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
           YSKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++SSRI  IC+EE L+LDSEAL+T
Sbjct: 142 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALST 201

Query: 536 LNHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           L+ +S+GD+RRAITYLQGAARL+G             VV  +VV +
Sbjct: 202 LSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQA 247


>tr|A5BRZ3|A5BRZ3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019805 PE=4 SV=1
          Length = 341

 Score =  336 bits (861), Expect = 9e-91
 Identities = 170/226 (75%), Positives = 190/226 (84%), Gaps = 2/226 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQ+EVV  LTN LET N PH+LFYGPPGTGKT+TALAI+HQLFGPELYK+RVLELNA
Sbjct: 22  DVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG--VSGYPCPPFKIIILDEADSMTEDAQNALRRTMET 355
           SDDRGINVVRTKIKDFA VAVG G    GYPCPP+KIIILDEADSMTEDAQNALRRTMET
Sbjct: 82  SDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTEDAQNALRRTMET 141

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
           YSKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++SSRI  IC+EE L+LDSEAL+T
Sbjct: 142 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEEELNLDSEALST 201

Query: 536 LNHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           L+ +S+GD+RRAITYLQGAARL+G             VV  +VV +
Sbjct: 202 LSSISQGDLRRAITYLQGAARLFGSIISSKDLISVSGVVPQHVVQA 247


>tr|B7FK39|B7FK39_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 339

 Score =  335 bits (860), Expect = 1e-90
 Identities = 163/204 (79%), Positives = 186/204 (91%), Gaps = 2/204 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LTN LETG+ PH+LFYGPPGTGKT+TALAI+HQLFGPELYK+RVLELNA
Sbjct: 22  DVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPGV--SGYPCPPFKIIILDEADSMTEDAQNALRRTMET 355
           SDDRGINVVRTKIKDFAAVAVG     +GYPCPP+KII+LDEADSMTEDAQNALRRTMET
Sbjct: 82  SDDRGINVVRTKIKDFAAVAVGTNKPKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMET 141

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
           YSKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++SSRI +IC+EEG+ LD+E L+T
Sbjct: 142 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICKEEGIYLDAEGLST 201

Query: 536 LNHVSEGDMRRAITYLQGAARLYG 607
           L+++S+GD+RRAITYLQ AARL+G
Sbjct: 202 LSNISQGDLRRAITYLQSAARLFG 225


>tr|Q93ZX1|Q93ZX1_ARATH Putative replication factor (At1g21690)
           (Similar replication factor C, 37-kDa subunit)
           OS=Arabidopsis thaliana GN=At1g21690/F8K7.11 PE=2 SV=1
          Length = 339

 Score =  330 bits (845), Expect = 6e-89
 Identities = 164/204 (80%), Positives = 181/204 (88%), Gaps = 2/204 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LTN L+T + PH+LFYGPPGTGKT+TALAI+HQLFGPELYK+RVLELNA
Sbjct: 22  DVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG--VSGYPCPPFKIIILDEADSMTEDAQNALRRTMET 355
           SDDRGINVVRTKIKDFAAVAVG     SGYPCP FKIIILDEADSMTEDAQNALRRTMET
Sbjct: 82  SDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTEDAQNALRRTMET 141

Query: 356 YSKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTT 535
           YSKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++S+RI  IC EEGLSLD EAL+T
Sbjct: 142 YSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDGEALST 201

Query: 536 LNHVSEGDMRRAITYLQGAARLYG 607
           L+ +S+GD+RRAITYLQ A RL+G
Sbjct: 202 LSSISQGDLRRAITYLQSATRLFG 225


>tr|Q9FXM3|Q9FXM3_ORYSJ cDNA clone:J033138A02, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OsRFC2 PE=2 SV=1
          Length = 339

 Score =  327 bits (837), Expect = 5e-88
 Identities = 164/225 (72%), Positives = 187/225 (83%), Gaps = 1/225 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LT  L+T +LPH+LFYGPPGTGKT+TALAI++QL+GPELYK+RVLELNA
Sbjct: 22  DVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG-VSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SDDRGINVVRTKIKDFAAVAVG     GYPCPP+KIIILDEADSMTEDAQNALRRTMETY
Sbjct: 82  SDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 141

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++S+RI  IC EEGLSLD++AL TL
Sbjct: 142 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATL 201

Query: 539 NHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           + +S GD+RRAITYLQ AARL+G              + ++VV S
Sbjct: 202 STISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKS 246


>tr|Q0IPQ0|Q0IPQ0_ORYSJ Os12g0176500 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os12g0176500 PE=4 SV=1
          Length = 379

 Score =  327 bits (837), Expect = 5e-88
 Identities = 164/225 (72%), Positives = 187/225 (83%), Gaps = 1/225 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LT  L+T +LPH+LFYGPPGTGKT+TALAI++QL+GPELYK+RVLELNA
Sbjct: 62  DVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNA 121

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG-VSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SDDRGINVVRTKIKDFAAVAVG     GYPCPP+KIIILDEADSMTEDAQNALRRTMETY
Sbjct: 122 SDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 181

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++S+RI  IC EEGLSLD++AL TL
Sbjct: 182 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATL 241

Query: 539 NHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           + +S GD+RRAITYLQ AARL+G              + ++VV S
Sbjct: 242 STISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKS 286


>tr|A2ZIL4|A2ZIL4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37665 PE=4 SV=1
          Length = 339

 Score =  327 bits (837), Expect = 5e-88
 Identities = 164/225 (72%), Positives = 187/225 (83%), Gaps = 1/225 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEVV  LT  L+T +LPH+LFYGPPGTGKT+TALAI++QL+GPELYK+RVLELNA
Sbjct: 22  DVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG-VSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SDDRGINVVRTKIKDFAAVAVG     GYPCPP+KIIILDEADSMTEDAQNALRRTMETY
Sbjct: 82  SDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTEDAQNALRRTMETY 141

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++S+RI  IC EEGLSLD++AL TL
Sbjct: 142 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEEGLSLDAQALATL 201

Query: 539 NHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           + +S GD+RRAITYLQ AARL+G              + ++VV S
Sbjct: 202 STISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIPEDVVKS 246


>tr|B6T4T0|B6T4T0_MAIZE Replication factor C subunit 2 OS=Zea mays
           PE=2 SV=1
          Length = 339

 Score =  323 bits (828), Expect = 6e-87
 Identities = 160/225 (71%), Positives = 190/225 (84%), Gaps = 1/225 (0%)
 Frame = +2

Query: 2   DVVHQEEVVLTLTNALETGNLPHLLFYGPPGTGKTSTALAISHQLFGPELYKTRVLELNA 181
           DV HQEEV+  L N L+T +LPH+LFYGPPGTGKT+TALAI++QL+GPELYK+RVLELNA
Sbjct: 22  DVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGPELYKSRVLELNA 81

Query: 182 SDDRGINVVRTKIKDFAAVAVGPG-VSGYPCPPFKIIILDEADSMTEDAQNALRRTMETY 358
           SDDRGINVVRTKIK+FAAVAVG    +GYPCPP+KIIILDEADSMTEDAQNALRRT ETY
Sbjct: 82  SDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTEDAQNALRRTTETY 141

Query: 359 SKVTRFCFICNYVSRIIEPLTSRCAKFRFKPLLDNMLSSRIQFICREEGLSLDSEALTTL 538
           SKVTRF FICNY+SRIIEPL SRCAKFRFKPL + ++SSRI  IC EEGL+L+++A++TL
Sbjct: 142 SKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEEGLNLNAQAMSTL 201

Query: 539 NHVSEGDMRRAITYLQGAARLYGXXXXXXXXXXXXRVVSDNVVHS 673
           + +S+GD+RRAITYLQ AARL+G             V+ ++VV S
Sbjct: 202 SVISQGDLRRAITYLQSAARLFGSSISSSDLISVSGVIPEDVVKS 246