DK951111
Clone id TST38A01NGRL0010_I10
Library
Length 636
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_I10. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
TGATTGTCTGCTACTACTGGAGTTCGCGAACTTCCTAGGGTTTCCTGCGTTAAGCTTTTC
GAAGGTTGCGCAGTCGTGCTTGCTGGTTCTACGGTCGGGCTTCGCAGACCTTATAGGTTT
TTGTGGGTTTTGTGCGTGCCTACCAGTTTGCGTTTTGATGCGAAGGTCCCATGGAGGGCG
CTAATAGCAACGGCCTGAATTCTTTCCCTTTTATCAATGATGGATCGTTTCTGGAGCGAT
TTAAGCAGCTTCAAGAGCAGAAAGAAGCAGCAAAGGCAGAAATTTCTGCATGTGTAGCCC
CATCACTAGATCGTCGTTCTGCCACCGCAAAGGAGGTTTCTCTGGTGCCCTCAAGGATCA
TTTTTTTTTCTTCCCCCCCCCCCTCTTCTGTTGCACCAGGTGAAAAAAAAAAGGGGAGTC
TAAAACCAAAGTCAAGATCGGTTGTCAATCCATTGAAGCTGGGTGAGGATGATGATGAGG
ATGAAGATGGACAACAGGCTCTTACTGATCCACAACCGAAAGGCAGAATAGCCAATGGGG
GCTCACCTAAAGAACAGTCAAAAGACGCAATACCGTCTCCACCCACTGATTTGGAGGTGA
AAAAGGTAGCCGACAAACTTGCACATTTTGTTGCTA
■■Homology search results ■■ -
sp_hit_id Q94C11
Definition sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis thaliana
Align length 152
Score (bit) 61.2
E-value 4.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951111|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I10, 5'
(636 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidops... 61 4e-09
sp|Q8IWZ8|SF04_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 PE... 35 0.42
sp|A0T0Q6|RK1_THAPS 50S ribosomal protein L1, chloroplastic OS=T... 31 4.7
sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum ... 31 6.1
sp|Q9D735|CS043_MOUSE Uncharacterized protein C19orf43 homolog O... 30 8.0
sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum ... 30 8.0

>sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis
thaliana GN=At3g52120 PE=2 SV=1
Length = 443

Score = 61.2 bits (147), Expect = 4e-09
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389
F+NDGSF+ERF+QLQ++K+ K ++ + +K V +
Sbjct: 10 FVNDGSFMERFRQLQQEKDKDKDKVV---------QVEDSKPVKIISNPKPAANKISIGL 60

Query: 390 XXXGEKKKG-----SLKPKSRSVVNPLKLGXXXXXXXXG---QQALTDPQPKGRIANGGS 545
+KKG SLK KS+ + P+KLG +Q + + ++ +
Sbjct: 61 KPNDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVK-RQKLEQRDT 119

Query: 546 PKEQSK--DAIPSPPTDLEVKKVADKLAHFVA 635
P + +K D P PP+D VKKVADKLA FVA
Sbjct: 120 PVKSAKVSDVAPPPPSDPTVKKVADKLASFVA 151


>sp|Q8IWZ8|SF04_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 PE=1
SV=2
Length = 645

Score = 34.7 bits (78), Expect = 0.42
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = +3

Query: 165 GPMEGANSNGLNSFPFINDGSFLERFKQLQEQKEAAKAEISACVAP 302
G + A+++ S F NDGSFL++F +LQ+ + + A SA AP
Sbjct: 68 GEITNAHNSSCISNKFANDGSFLQQFLKLQKAQTSTDAPTSAPSAP 113



Score = 32.0 bits (71), Expect = 2.7
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3

Query: 549 KEQSKDAIPSPPTDLEVKKVADKLAHFVA 635
K Q+ SPP D EVK +A+KLA F+A
Sbjct: 247 KSQAASQKVSPPEDEEVKNLAEKLARFIA 275


>sp|A0T0Q6|RK1_THAPS 50S ribosomal protein L1, chloroplastic
OS=Thalassiosira pseudonana GN=rpl1 PE=3 SV=1
Length = 230

Score = 31.2 bits (69), Expect = 4.7
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -3

Query: 232 RNDPSLIKGKEFRPLLLAPSMGPSHQ 155
+N PS +KGK F+ L + SMGPS Q
Sbjct: 198 QNRPSGVKGKYFKSLFICTSMGPSIQ 223


>sp|Q8CGZ0|CHERP_MOUSE Calcium homeostasis endoplasmic reticulum
protein OS=Mus musculus GN=Cherp PE=1 SV=1
Length = 936

Score = 30.8 bits (68), Expect = 6.1
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 570 IPSPPTDLEVKKVADKLAHFVA 635
+P PP D E++ V DKLA FVA
Sbjct: 3 MPMPPDDQELRNVIDKLAQFVA 24


>sp|Q9D735|CS043_MOUSE Uncharacterized protein C19orf43 homolog
OS=Mus musculus PE=2 SV=1
Length = 173

Score = 30.4 bits (67), Expect = 8.0
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +3

Query: 186 SNGLNSFPFINDGSFLERFKQLQEQKEAAKAE 281
S+G+N F NDGSFLE FK+ E+++ + E
Sbjct: 49 SSGVNLFA--NDGSFLELFKRKMEEEQRQRQE 78


>sp|Q8IWX8|CHERP_HUMAN Calcium homeostasis endoplasmic reticulum
protein OS=Homo sapiens GN=CHERP PE=1 SV=2
Length = 916

Score = 30.4 bits (67), Expect = 8.0
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +3

Query: 570 IPSPPTDLEVKKVADKLAHFVA 635
+P PP D E++ V DKLA FVA
Sbjct: 3 MPLPPDDQELRNVIDKLAQFVA 24


tr_hit_id A9THK7
Definition tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 143
Score (bit) 75.1
E-value 3.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951111|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_I10, 5'
(636 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella paten... 75 3e-12
tr|B3H4X1|B3H4X1_ARATH Uncharacterized protein At3g52120.2 OS=Ar... 61 5e-08
tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole geno... 60 1e-07
tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis... 60 1e-07
tr|B8BDQ9|B8BDQ9_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07
tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza... 58 4e-07
tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis s... 54 6e-06
tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2... 49 3e-04
tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2... 38 0.45
tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.76
tr|O24726|O24726_NOCSK Putative uncharacterized protein orf2 OS=... 36 1.7
tr|Q5R403|Q5R403_PONAB Putative uncharacterized protein DKFZp459... 36 2.2
tr|A5PLN4|A5PLN4_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 ... 35 2.9
tr|Q0VDC7|Q0VDC7_HUMAN SF4 protein (Fragment) OS=Homo sapiens GN... 35 5.0
tr|B4DVK3|B4DVK3_HUMAN cDNA FLJ57089, highly similar to Splicing... 35 5.0
tr|B4DGJ0|B4DGJ0_HUMAN cDNA FLJ58060, highly similar to Splicing... 35 5.0
tr|A8K7S0|A8K7S0_HUMAN cDNA FLJ75478, highly similar to Homo sap... 35 5.0
tr|Q16RU4|Q16RU4_AEDAE Putative uncharacterized protein OS=Aedes... 34 6.5
tr|B5DPU3|B5DPU3_DROPS GA23822 OS=Drosophila pseudoobscura pseud... 34 6.5
tr|A4FV64|A4FV64_BOVIN SF4 protein OS=Bos taurus GN=SF4 PE=2 SV=1 34 8.4

>tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_92860 PE=4 SV=1
Length = 479

Score = 75.1 bits (183), Expect = 3e-12
Identities = 57/143 (39%), Positives = 70/143 (48%)
Frame = +3

Query: 207 PFINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXX 386
PF NDGSFLERFKQLQ Q +KA+ S P + + ++K S
Sbjct: 4 PFPNDGSFLERFKQLQ-QDGPSKADTSG---PVVLKNVKSSKASSNSKGGGGSAFGGPRK 59

Query: 387 XXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKD 566
K SLK KSR VN +KLG G + K A+ G E K+
Sbjct: 60 GSLPNGKLAFSLKQKSRLAVNAIKLGEDEDEEEDGDAQRQAKKVKTESASKGKSPEP-KE 118

Query: 567 AIPSPPTDLEVKKVADKLAHFVA 635
++P+PP D EVKKVADKLA FVA
Sbjct: 119 SVPAPPADGEVKKVADKLALFVA 141


>tr|B3H4X1|B3H4X1_ARATH Uncharacterized protein At3g52120.2
OS=Arabidopsis thaliana GN=At3g52120 PE=4 SV=1
Length = 414

Score = 61.2 bits (147), Expect = 5e-08
Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389
F+NDGSF+ERF+QLQ++K+ K ++ + +K V +
Sbjct: 10 FVNDGSFMERFRQLQQEKDKDKDKVV---------QVEDSKPVKIISNPKPAANKISIGL 60

Query: 390 XXXGEKKKG-----SLKPKSRSVVNPLKLGXXXXXXXXG---QQALTDPQPKGRIANGGS 545
+KKG SLK KS+ + P+KLG +Q + + ++ +
Sbjct: 61 KPNDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVK-RQKLEQRDT 119

Query: 546 PKEQSK--DAIPSPPTDLEVKKVADKLAHFVA 635
P + +K D P PP+D VKKVADKLA FVA
Sbjct: 120 PVKSAKVSDVAPPPPSDPTVKKVADKLASFVA 151


>tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00008843001
PE=4 SV=1
Length = 441

Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/150 (32%), Positives = 61/150 (40%), Gaps = 8/150 (5%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPS----LDRRSATAKEVSLXXXXXXXXXXX 377
F+NDGSF+ERFKQLQ++ E K + + P + S S
Sbjct: 10 FVNDGSFMERFKQLQQENEKEKGKGAKLEEPKQRMVVPATSTPNSIPSKTNNVSKTNGTR 69

Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQ 557
K SLK KS+ V P+KLG L+ P R G +
Sbjct: 70 KTPLAAPNGKLAFSLKQKSKLVPPPVKLGADEDEEETDAGNLSSDAPMKRQKLGQKDSSE 129

Query: 558 SK----DAIPSPPTDLEVKKVADKLAHFVA 635
D P P+D VKKVADKLA FVA
Sbjct: 130 HPSPQVDVAPPSPSDPAVKKVADKLASFVA 159


>tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_035536 PE=4 SV=1
Length = 473

Score = 59.7 bits (143), Expect = 1e-07
Identities = 49/150 (32%), Positives = 61/150 (40%), Gaps = 8/150 (5%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPS----LDRRSATAKEVSLXXXXXXXXXXX 377
F+NDGSF+ERFKQLQ++ E K + + P + S S
Sbjct: 10 FVNDGSFMERFKQLQQENEKEKGKGAKLEEPKQRMVVPATSTPNSIPSKTNNVSKTNGTR 69

Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQ 557
K SLK KS+ V P+KLG L+ P R G +
Sbjct: 70 KTPLAAPNGKLAFSLKQKSKLVPPPVKLGADEDEEETDAGNLSSDAPMKRQKLGQKDSSE 129

Query: 558 SK----DAIPSPPTDLEVKKVADKLAHFVA 635
D P P+D VKKVADKLA FVA
Sbjct: 130 HPSPQVDVAPPSPSDPAVKKVADKLASFVA 159


>tr|B8BDQ9|B8BDQ9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_30690 PE=4 SV=1
Length = 215

Score = 58.5 bits (140), Expect = 3e-07
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Frame = +3

Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPSLDRR----SATAKEVSLXXXXXXXX 368
F NDGSF+ERFKQ+QE +K AA + +A A + + + +A S
Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASPSAAAAAKATNPKPVVVAANTPSASKRPLELKGG 66

Query: 369 XXXXXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSP 548
G K SLK K++ V P+K +P + + A +P
Sbjct: 67 EVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREEPVKRQKYAQPEAP 125

Query: 549 KEQ---SKDAIPSPPTDLEVKKVADKLAHFVA 635
S PSPP D+ VK+VADKLA+FVA
Sbjct: 126 ASAAALSGVVAPSPPNDMTVKQVADKLANFVA 157


>tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_30692 PE=4 SV=1
Length = 431

Score = 58.2 bits (139), Expect = 4e-07
Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%)
Frame = +3

Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPSLDRR----SATAKEVSLXXXXXXXX 368
F NDGSF+ERFKQ+QE +K AA + +A A + + + +A S
Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASPSAAAAAKATNPKPVVVAANTPSASKRPLELKGG 66

Query: 369 XXXXXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSP 548
G K SLK K++ V P+K +P + + A +P
Sbjct: 67 EVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREEPVKRQKYAQPEAP 125

Query: 549 KEQ---SKDAIPSPPTDLEVKKVADKLAHFVA 635
S PSPP D+ VK+VADKLA+FVA
Sbjct: 126 ASVAALSGVVAPSPPNDMTVKQVADKLANFVA 157


>tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis
sativus PE=2 SV=1
Length = 446

Score = 54.3 bits (129), Expect = 6e-06
Identities = 52/151 (34%), Positives = 68/151 (45%), Gaps = 9/151 (5%)
Frame = +3

Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPS-LDRRSATAKEVSLXXXXXXXXXXX 377
F+NDGSF+ERFKQLQ+ +K+ K + + P + + T+ +
Sbjct: 10 FVNDGSFMERFKQLQQKNGEKDKDKDKGATSEEPKPIKIIAGTSIPHNTSGKTSMQFKGG 69

Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGS---- 545
K SLK KS+ V +KLG +D P+ R G
Sbjct: 70 EIRKTAPTGKLAFSLKQKSKLVAPSVKLGADEDEDEPDAVDASDHLPEKRQKLGPQDDTE 129

Query: 546 -PKEQSKDAIPSPPTDLEVKKVADKLAHFVA 635
P QS DA PSP +D VKKVADKLA FVA
Sbjct: 130 QPVLQSGDAPPSP-SDPTVKKVADKLASFVA 159


>tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2
SV=1
Length = 419

Score = 48.5 bits (114), Expect = 3e-04
Identities = 40/142 (28%), Positives = 57/142 (40%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389
F NDGSF+ERFKQ+Q++ + KA A + S + A K+
Sbjct: 6 FTNDGSFMERFKQMQQEAQEKKA---AAASASSAPKHANPKQGFAVAANKRPFELKNAAP 62

Query: 390 XXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKDA 569
K SLK +V ++ + K A+ + S
Sbjct: 63 VASAGKLAFSLKKAKVAVAPVFAADEEDEDAVDVEREEPAKRQKSVQADAPAAAAPSGAV 122

Query: 570 IPSPPTDLEVKKVADKLAHFVA 635
P PP D+ V++VADKLA FVA
Sbjct: 123 APPPPNDMTVRQVADKLASFVA 144


>tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2
SV=1
Length = 410

Score = 38.1 bits (87), Expect = 0.45
Identities = 38/142 (26%), Positives = 58/142 (40%)
Frame = +3

Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389
F NDGSF+ERFKQ+Q++ + KA A + S + A K+
Sbjct: 6 FTNDGSFMERFKQMQQEAQEKKA---AAASASSAPKHANPKQGFAVAANKRPFELKNAAP 62

Query: 390 XXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKDA 569
K SLK K++ V P+ + +P + + +P
Sbjct: 63 VASAGKLAFSLK-KAKVAVAPVFAADEEDEDAVDVER-EEPAKRQKSVQADAP------- 113

Query: 570 IPSPPTDLEVKKVADKLAHFVA 635
+ P+ V++VADKLA FVA
Sbjct: 114 AAAAPSGAVVRQVADKLASFVA 135


>tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_027529 PE=4 SV=1
Length = 493

Score = 37.4 bits (85), Expect = 0.76
Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +3

Query: 210 FINDGSFLERFKQLQE-QKEAAKAEISACVA 299
F NDGSF+ERFKQ+QE +KE A A S+ A
Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASSSAAA 37



Score = 37.0 bits (84), Expect = 1.00
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +3

Query: 573 PSPPTDLEVKKVADKLAHFVA 635
PSPP D+ VK+VADKLA+FVA
Sbjct: 199 PSPPNDMTVKQVADKLANFVA 219