DK951111 |
Clone id |
TST38A01NGRL0010_I10 |
Library |
TST38 |
Length |
636 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_I10. 5' end sequence. |
Accession |
DK951111 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
- |
Sequence |
TGATTGTCTGCTACTACTGGAGTTCGCGAACTTCCTAGGGTTTCCTGCGTTAAGCTTTTC GAAGGTTGCGCAGTCGTGCTTGCTGGTTCTACGGTCGGGCTTCGCAGACCTTATAGGTTT TTGTGGGTTTTGTGCGTGCCTACCAGTTTGCGTTTTGATGCGAAGGTCCCATGGAGGGCG CTAATAGCAACGGCCTGAATTCTTTCCCTTTTATCAATGATGGATCGTTTCTGGAGCGAT TTAAGCAGCTTCAAGAGCAGAAAGAAGCAGCAAAGGCAGAAATTTCTGCATGTGTAGCCC CATCACTAGATCGTCGTTCTGCCACCGCAAAGGAGGTTTCTCTGGTGCCCTCAAGGATCA TTTTTTTTTCTTCCCCCCCCCCCTCTTCTGTTGCACCAGGTGAAAAAAAAAAGGGGAGTC TAAAACCAAAGTCAAGATCGGTTGTCAATCCATTGAAGCTGGGTGAGGATGATGATGAGG ATGAAGATGGACAACAGGCTCTTACTGATCCACAACCGAAAGGCAGAATAGCCAATGGGG GCTCACCTAAAGAACAGTCAAAAGACGCAATACCGTCTCCACCCACTGATTTGGAGGTGA AAAAGGTAGCCGACAAACTTGCACATTTTGTTGCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q94C11 |
Definition |
sp|Q94C11|SF04_ARATH Splicing factor 4-like protein OS=Arabidopsis thaliana |
Align length |
152 |
Score (bit) |
61.2 |
E-value |
4.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9THK7 |
Definition |
tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
143 |
Score (bit) |
75.1 |
E-value |
3.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951111|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_I10, 5' (636 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella paten... 75 3e-12 tr|B3H4X1|B3H4X1_ARATH Uncharacterized protein At3g52120.2 OS=Ar... 61 5e-08 tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole geno... 60 1e-07 tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis... 60 1e-07 tr|B8BDQ9|B8BDQ9_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza... 58 4e-07 tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis s... 54 6e-06 tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2... 49 3e-04 tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2... 38 0.45 tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza... 37 0.76 tr|O24726|O24726_NOCSK Putative uncharacterized protein orf2 OS=... 36 1.7 tr|Q5R403|Q5R403_PONAB Putative uncharacterized protein DKFZp459... 36 2.2 tr|A5PLN4|A5PLN4_HUMAN Splicing factor 4 OS=Homo sapiens GN=SF4 ... 35 2.9 tr|Q0VDC7|Q0VDC7_HUMAN SF4 protein (Fragment) OS=Homo sapiens GN... 35 5.0 tr|B4DVK3|B4DVK3_HUMAN cDNA FLJ57089, highly similar to Splicing... 35 5.0 tr|B4DGJ0|B4DGJ0_HUMAN cDNA FLJ58060, highly similar to Splicing... 35 5.0 tr|A8K7S0|A8K7S0_HUMAN cDNA FLJ75478, highly similar to Homo sap... 35 5.0 tr|Q16RU4|Q16RU4_AEDAE Putative uncharacterized protein OS=Aedes... 34 6.5 tr|B5DPU3|B5DPU3_DROPS GA23822 OS=Drosophila pseudoobscura pseud... 34 6.5 tr|A4FV64|A4FV64_BOVIN SF4 protein OS=Bos taurus GN=SF4 PE=2 SV=1 34 8.4
>tr|A9THK7|A9THK7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_92860 PE=4 SV=1 Length = 479
Score = 75.1 bits (183), Expect = 3e-12 Identities = 57/143 (39%), Positives = 70/143 (48%) Frame = +3
Query: 207 PFINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXX 386 PF NDGSFLERFKQLQ Q +KA+ S P + + ++K S Sbjct: 4 PFPNDGSFLERFKQLQ-QDGPSKADTSG---PVVLKNVKSSKASSNSKGGGGSAFGGPRK 59
Query: 387 XXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKD 566 K SLK KSR VN +KLG G + K A+ G E K+ Sbjct: 60 GSLPNGKLAFSLKQKSRLAVNAIKLGEDEDEEEDGDAQRQAKKVKTESASKGKSPEP-KE 118
Query: 567 AIPSPPTDLEVKKVADKLAHFVA 635 ++P+PP D EVKKVADKLA FVA Sbjct: 119 SVPAPPADGEVKKVADKLALFVA 141
>tr|B3H4X1|B3H4X1_ARATH Uncharacterized protein At3g52120.2 OS=Arabidopsis thaliana GN=At3g52120 PE=4 SV=1 Length = 414
Score = 61.2 bits (147), Expect = 5e-08 Identities = 48/152 (31%), Positives = 72/152 (47%), Gaps = 10/152 (6%) Frame = +3
Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389 F+NDGSF+ERF+QLQ++K+ K ++ + +K V + Sbjct: 10 FVNDGSFMERFRQLQQEKDKDKDKVV---------QVEDSKPVKIISNPKPAANKISIGL 60
Query: 390 XXXGEKKKG-----SLKPKSRSVVNPLKLGXXXXXXXXG---QQALTDPQPKGRIANGGS 545 +KKG SLK KS+ + P+KLG +Q + + ++ + Sbjct: 61 KPNDAQKKGGKLAFSLKQKSKLLAPPVKLGTEEDEDDEDVKHEQGFGSVK-RQKLEQRDT 119
Query: 546 PKEQSK--DAIPSPPTDLEVKKVADKLAHFVA 635 P + +K D P PP+D VKKVADKLA FVA Sbjct: 120 PVKSAKVSDVAPPPPSDPTVKKVADKLASFVA 151
>tr|A7QWV9|A7QWV9_VITVI Chromosome chr13 scaffold_210, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008843001 PE=4 SV=1 Length = 441
Score = 59.7 bits (143), Expect = 1e-07 Identities = 49/150 (32%), Positives = 61/150 (40%), Gaps = 8/150 (5%) Frame = +3
Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPS----LDRRSATAKEVSLXXXXXXXXXXX 377 F+NDGSF+ERFKQLQ++ E K + + P + S S Sbjct: 10 FVNDGSFMERFKQLQQENEKEKGKGAKLEEPKQRMVVPATSTPNSIPSKTNNVSKTNGTR 69
Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQ 557 K SLK KS+ V P+KLG L+ P R G + Sbjct: 70 KTPLAAPNGKLAFSLKQKSKLVPPPVKLGADEDEEETDAGNLSSDAPMKRQKLGQKDSSE 129
Query: 558 SK----DAIPSPPTDLEVKKVADKLAHFVA 635 D P P+D VKKVADKLA FVA Sbjct: 130 HPSPQVDVAPPSPSDPAVKKVADKLASFVA 159
>tr|A5AHH4|A5AHH4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035536 PE=4 SV=1 Length = 473
Score = 59.7 bits (143), Expect = 1e-07 Identities = 49/150 (32%), Positives = 61/150 (40%), Gaps = 8/150 (5%) Frame = +3
Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPS----LDRRSATAKEVSLXXXXXXXXXXX 377 F+NDGSF+ERFKQLQ++ E K + + P + S S Sbjct: 10 FVNDGSFMERFKQLQQENEKEKGKGAKLEEPKQRMVVPATSTPNSIPSKTNNVSKTNGTR 69
Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQ 557 K SLK KS+ V P+KLG L+ P R G + Sbjct: 70 KTPLAAPNGKLAFSLKQKSKLVPPPVKLGADEDEEETDAGNLSSDAPMKRQKLGQKDSSE 129
Query: 558 SK----DAIPSPPTDLEVKKVADKLAHFVA 635 D P P+D VKKVADKLA FVA Sbjct: 130 HPSPQVDVAPPSPSDPAVKKVADKLASFVA 159
>tr|B8BDQ9|B8BDQ9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30690 PE=4 SV=1 Length = 215
Score = 58.5 bits (140), Expect = 3e-07 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Frame = +3
Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPSLDRR----SATAKEVSLXXXXXXXX 368 F NDGSF+ERFKQ+QE +K AA + +A A + + + +A S Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASPSAAAAAKATNPKPVVVAANTPSASKRPLELKGG 66
Query: 369 XXXXXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSP 548 G K SLK K++ V P+K +P + + A +P Sbjct: 67 EVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREEPVKRQKYAQPEAP 125
Query: 549 KEQ---SKDAIPSPPTDLEVKKVADKLAHFVA 635 S PSPP D+ VK+VADKLA+FVA Sbjct: 126 ASAAALSGVVAPSPPNDMTVKQVADKLANFVA 157
>tr|B8BDR0|B8BDR0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30692 PE=4 SV=1 Length = 431
Score = 58.2 bits (139), Expect = 4e-07 Identities = 49/152 (32%), Positives = 68/152 (44%), Gaps = 10/152 (6%) Frame = +3
Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPSLDRR----SATAKEVSLXXXXXXXX 368 F NDGSF+ERFKQ+QE +K AA + +A A + + + +A S Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASPSAAAAAKATNPKPVVVAANTPSASKRPLELKGG 66
Query: 369 XXXXXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSP 548 G K SLK K++ V P+K +P + + A +P Sbjct: 67 EVKKAGSISSGAKLAFSLK-KNKVAVAPVKFAADDEDEEDVGADREEPVKRQKYAQPEAP 125
Query: 549 KEQ---SKDAIPSPPTDLEVKKVADKLAHFVA 635 S PSPP D+ VK+VADKLA+FVA Sbjct: 126 ASVAALSGVVAPSPPNDMTVKQVADKLANFVA 157
>tr|B3TLK2|B3TLK2_CUCSA Gamma reponse I-like protein OS=Cucumis sativus PE=2 SV=1 Length = 446
Score = 54.3 bits (129), Expect = 6e-06 Identities = 52/151 (34%), Positives = 68/151 (45%), Gaps = 9/151 (5%) Frame = +3
Query: 210 FINDGSFLERFKQLQE---QKEAAKAEISACVAPS-LDRRSATAKEVSLXXXXXXXXXXX 377 F+NDGSF+ERFKQLQ+ +K+ K + + P + + T+ + Sbjct: 10 FVNDGSFMERFKQLQQKNGEKDKDKDKGATSEEPKPIKIIAGTSIPHNTSGKTSMQFKGG 69
Query: 378 XXXXXXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGS---- 545 K SLK KS+ V +KLG +D P+ R G Sbjct: 70 EIRKTAPTGKLAFSLKQKSKLVAPSVKLGADEDEDEPDAVDASDHLPEKRQKLGPQDDTE 129
Query: 546 -PKEQSKDAIPSPPTDLEVKKVADKLAHFVA 635 P QS DA PSP +D VKKVADKLA FVA Sbjct: 130 QPVLQSGDAPPSP-SDPTVKKVADKLASFVA 159
>tr|B6T4S9|B6T4S9_MAIZE Gamma response I protein OS=Zea mays PE=2 SV=1 Length = 419
Score = 48.5 bits (114), Expect = 3e-04 Identities = 40/142 (28%), Positives = 57/142 (40%) Frame = +3
Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389 F NDGSF+ERFKQ+Q++ + KA A + S + A K+ Sbjct: 6 FTNDGSFMERFKQMQQEAQEKKA---AAASASSAPKHANPKQGFAVAANKRPFELKNAAP 62
Query: 390 XXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKDA 569 K SLK +V ++ + K A+ + S Sbjct: 63 VASAGKLAFSLKKAKVAVAPVFAADEEDEDAVDVEREEPAKRQKSVQADAPAAAAPSGAV 122
Query: 570 IPSPPTDLEVKKVADKLAHFVA 635 P PP D+ V++VADKLA FVA Sbjct: 123 APPPPNDMTVRQVADKLASFVA 144
>tr|B6TXI3|B6TXI3_MAIZE Gamma response I protein OS=Zea mays PE=2 SV=1 Length = 410
Score = 38.1 bits (87), Expect = 0.45 Identities = 38/142 (26%), Positives = 58/142 (40%) Frame = +3
Query: 210 FINDGSFLERFKQLQEQKEAAKAEISACVAPSLDRRSATAKEVSLXXXXXXXXXXXXXXX 389 F NDGSF+ERFKQ+Q++ + KA A + S + A K+ Sbjct: 6 FTNDGSFMERFKQMQQEAQEKKA---AAASASSAPKHANPKQGFAVAANKRPFELKNAAP 62
Query: 390 XXXGEKKKGSLKPKSRSVVNPLKLGXXXXXXXXGQQALTDPQPKGRIANGGSPKEQSKDA 569 K SLK K++ V P+ + +P + + +P Sbjct: 63 VASAGKLAFSLK-KAKVAVAPVFAADEEDEDAVDVER-EEPAKRQKSVQADAP------- 113
Query: 570 IPSPPTDLEVKKVADKLAHFVA 635 + P+ V++VADKLA FVA Sbjct: 114 AAAAPSGAVVRQVADKLASFVA 135
>tr|A3BWV7|A3BWV7_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_027529 PE=4 SV=1 Length = 493
Score = 37.4 bits (85), Expect = 0.76 Identities = 19/31 (61%), Positives = 23/31 (74%), Gaps = 1/31 (3%) Frame = +3
Query: 210 FINDGSFLERFKQLQE-QKEAAKAEISACVA 299 F NDGSF+ERFKQ+QE +KE A A S+ A Sbjct: 7 FANDGSFMERFKQMQEKEKEKAAAASSSAAA 37
Score = 37.0 bits (84), Expect = 1.00 Identities = 16/21 (76%), Positives = 19/21 (90%) Frame = +3
Query: 573 PSPPTDLEVKKVADKLAHFVA 635 PSPP D+ VK+VADKLA+FVA Sbjct: 199 PSPPNDMTVKQVADKLANFVA 219
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