DK951126
Clone id TST38A01NGRL0010_J01
Library
Length 668
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_J01. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
GCCGAATTATGCAATTTGTCAAACATGATGCAAATCAGAATGAATTCTATTCTTTAATGG
ACCTGCCAGAAGTAGAAGAACTTCCATGTGAACGGTAGACAGTCATTCAGTTCTGCGACT
TCATTGCCCAAGGGGTCTTTGACGTCACCGAGGAAGAAAGTGGAGACCATATTGTGTGCA
TCTCTTCACCACTTCTACGCACTGCTATCCTTTGTGGGAGTGCCATTGTGCAGGAGGAGG
TGAATTTGCCTCCTACTTCTCACCACTTGGATAGGATGTGGGTTGTCCTACAGGCTATCA
AGTCCCTTGATGGTGCTCCTATGTGCAAGCCTAAGTGTCTGAATGCGGATGATAAACCAT
CAAAATATGCACATCAGTTTTTGTTCATGTGCAGTCTTAAGGCAATTTTGCAACAAGCAT
ACCCTTCAATAGGAGCTAGGATCTTGCCAGAATCCAAGCATAAACAATTGTATTCTTTTA
CAATCGTTGTATTCTCCACCTTCATCCGTGATCCCAAGCTTACCACCATAACCAATCATG
ACCCCGCTTGAAACAATCGACAACACTATGTTTCCTTTTAACTAACCTTCGGTTCCCATG
AGGCAAACCTTCCTTGTACATTGATAATCCATTGGTCAAATTTATGTCAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q0SG75
Definition sp|Q0SG75|DNLI_RHOSR Probable DNA ligase OS=Rhodococcus sp. (strain RHA1)
Align length 80
Score (bit) 35.4
E-value 0.26
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J01, 5'
(648 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0SG75|DNLI_RHOSR Probable DNA ligase OS=Rhodococcus sp. (str... 35 0.26
sp|A1L1K7|ACBG2_RAT Long-chain-fatty-acid--CoA ligase ACSBG2 OS=... 31 4.9
sp|Q5R663|KBTB3_PONAB Kelch repeat and BTB domain-containing pro... 31 6.4
sp|Q8NAB2|KBTB3_HUMAN Kelch repeat and BTB domain-containing pro... 31 6.4
sp|Q969S9|EFG2_HUMAN Elongation factor G 2, mitochondrial OS=Hom... 31 6.4
sp|Q10312|YD59_SCHPO Uncharacterized protein C6C3.09 OS=Schizosa... 30 8.3
sp|Q8BHI4|KBTB3_MOUSE Kelch repeat and BTB domain-containing pro... 30 8.3

>sp|Q0SG75|DNLI_RHOSR Probable DNA ligase OS=Rhodococcus sp. (strain
RHA1) GN=lig PE=3 SV=1
Length = 503

Score = 35.4 bits (80), Expect = 0.26
Identities = 22/80 (27%), Positives = 37/80 (46%)
Frame = -3

Query: 370 AYFDGLSSAFRHLGLHIGAPSRDLIACRTTHILSKW*EVGGKFTSSCTMALPQRIAVRRS 191
A FDG A L +G P R ++A + W E+GG + + RI V R+
Sbjct: 165 AAFDGGVDALTAFRLEVGRPVRPMLASPAESLTDAWTELGGDVSVEYKLD-GARIQVHRN 223

Query: 190 GEEMHTIWSPLSSSVTSKTP 131
G+++H +++ +T P
Sbjct: 224 GDDVH-VFTRTLREITGSVP 242


>sp|A1L1K7|ACBG2_RAT Long-chain-fatty-acid--CoA ligase ACSBG2
OS=Rattus norvegicus GN=Acsbg2 PE=2 SV=1
Length = 667

Score = 31.2 bits (69), Expect = 4.9
Identities = 24/91 (26%), Positives = 38/91 (41%)
Frame = +3

Query: 105 IQFCDFIAQGVFDVTEEESGDHIVCISSPLLRTAILCGSAIVQEEVNLPPTSHHLDRMWV 284
I FC + V++ I+ I P++ TAI G IV ++ + H R W+
Sbjct: 579 ISFCQMLGSQAVTVSD------ILKIRDPVVYTAIQYGIDIVNQQA---VSDSHRIRKWI 629

Query: 285 VLQAIKSLDGAPMCKPKCLNADDKPSKYAHQ 377
+L+ S+ G + L D KY Q
Sbjct: 630 ILEKDFSIQGGELGPTSKLKRDLITQKYKAQ 660


>sp|Q5R663|KBTB3_PONAB Kelch repeat and BTB domain-containing
protein 3 OS=Pongo abelii GN=KBTBD3 PE=2 SV=2
Length = 608

Score = 30.8 bits (68), Expect = 6.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3

Query: 3 RIMQFVKHDANQNEFYSLMDLPEVEELPCER*TVIQFCDFIAQGVFDVTEEESGDHIVCI 182
+I+ +++ QN FY + + E +PC R V+ C + +F+V +E D V I
Sbjct: 33 KILSVLQNFREQNVFYDFKIIMKDEIIPCHR-CVLAACSDFFRAMFEVNMKERDDGSVTI 91

Query: 183 SS 188
++
Sbjct: 92 TN 93


>sp|Q8NAB2|KBTB3_HUMAN Kelch repeat and BTB domain-containing
protein 3 OS=Homo sapiens GN=KBTBD3 PE=2 SV=2
Length = 608

Score = 30.8 bits (68), Expect = 6.4
Identities = 17/62 (27%), Positives = 32/62 (51%)
Frame = +3

Query: 3 RIMQFVKHDANQNEFYSLMDLPEVEELPCER*TVIQFCDFIAQGVFDVTEEESGDHIVCI 182
+I+ +++ QN FY + + E +PC R V+ C + +F+V +E D V I
Sbjct: 33 KILSVLQNFREQNVFYDFKIIMKDEIIPCHR-CVLAACSDFFRAMFEVNMKERDDGSVTI 91

Query: 183 SS 188
++
Sbjct: 92 TN 93


>sp|Q969S9|EFG2_HUMAN Elongation factor G 2, mitochondrial OS=Homo
sapiens GN=GFM2 PE=1 SV=1
Length = 779

Score = 30.8 bits (68), Expect = 6.4
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Frame = +3

Query: 69 EVEELPCER*TVIQFCDF-----IAQGVFDVTEE--ESGDHIVCISSPLLRTAILCGSAI 227
EVE P E +V+ +F I +G+ V++E E+G H C+ PLL GS I
Sbjct: 592 EVEARPIETSSVMPVIEFEYAESINEGLLKVSQEAIENGIHSACLQGPLL------GSPI 645

Query: 228 VQEEVNLPPTSHHLDRMWVVLQAIKSLDGAPMCKPKCLNADDK 356
+ L + H ++ A S C K L DK
Sbjct: 646 QDVAITLHSLTIHPGTSTTMISACVS-----RCVQKALKKADK 683


>sp|Q10312|YD59_SCHPO Uncharacterized protein C6C3.09
OS=Schizosaccharomyces pombe GN=SPAC6C3.09 PE=2 SV=2
Length = 335

Score = 30.4 bits (67), Expect = 8.3
Identities = 19/73 (26%), Positives = 30/73 (41%)
Frame = +3

Query: 111 FCDFIAQGVFDVTEEESGDHIVCISSPLLRTAILCGSAIVQEEVNLPPTSHHLDRMWVVL 290
+ FI G+ + D+ +CIS +L + S +V P +S D +WV
Sbjct: 74 YSTFIHTGIATIVSSSDNDNKICISQGILSVTLDKDSYLVSGIDAKPSSSEPKDTLWVAN 133

Query: 291 QAIKSLDGAPMCK 329
+KS P K
Sbjct: 134 IDLKSAFLRPQWK 146


>sp|Q8BHI4|KBTB3_MOUSE Kelch repeat and BTB domain-containing
protein 3 OS=Mus musculus GN=Kbtbd3 PE=2 SV=1
Length = 607

Score = 30.4 bits (67), Expect = 8.3
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3

Query: 3 RIMQFVKHDANQNEFYSLMDLPEVEELPCER*TVIQFCDFIAQGVFDVTEEESGDHIVCI 182
+I+ ++ QN FY + + E +PC R V+ C + +F+V +E D V I
Sbjct: 33 KILSVLQSFREQNVFYDFKIIMKEEIIPCHR-CVLAACSDFFRAMFEVNMKERDDGSVTI 91

Query: 183 SS 188
++
Sbjct: 92 TN 93


tr_hit_id A8XJP1
Definition tr|A8XJP1|A8XJP1_CAEBR Putative uncharacterized protein OS=Caenorhabditis briggsae
Align length 61
Score (bit) 34.7
E-value 5.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951126|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J01, 5'
(648 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A8XJP1|A8XJP1_CAEBR Putative uncharacterized protein OS=Caeno... 35 5.1
tr|Q20000|Q20000_CAEEL Putative uncharacterized protein OS=Caeno... 34 6.7
tr|A3AX95|A3AX95_ORYSJ Putative uncharacterized protein OS=Oryza... 34 8.7
tr|Q0UUZ8|Q0UUZ8_PHANO Putative uncharacterized protein OS=Phaeo... 34 8.7

>tr|A8XJP1|A8XJP1_CAEBR Putative uncharacterized protein
OS=Caenorhabditis briggsae GN=CBG14285 PE=4 SV=1
Length = 502

Score = 34.7 bits (78), Expect = 5.1
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +3

Query: 318 PMCKPKCLNADDKPSKYAHQFLFMCSLKAILQQAYPSIGARILPESKHKQLYSFTIVVFS 497
P+C P C+NA P++ A Q + CS + +QQ +PS + P + + S + +
Sbjct: 72 PLCLPACINAIQGPTECAPQCMPSCS-SSCIQQVFPSCPQQCQPVCTPQCIQSIQVAIRP 130

Query: 498 T 500
T
Sbjct: 131 T 131


>tr|Q20000|Q20000_CAEEL Putative uncharacterized protein
OS=Caenorhabditis elegans GN=F35A5.4 PE=2 SV=2
Length = 524

Score = 34.3 bits (77), Expect = 6.7
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +3

Query: 318 PMCKPKCLNADDKPSKYAHQFLFMCSLKAILQQAYPSIGARILPESKHKQLYSFTIVV 491
P+C P C+NA P++ A Q + CS I QQ +PS + P + + S + +
Sbjct: 113 PLCLPACINAIQGPTECAPQCMPSCSSNCI-QQVFPSCPQQCQPVCTPQCIQSIQVAI 169


>tr|A3AX95|A3AX95_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_015417 PE=4 SV=1
Length = 509

Score = 33.9 bits (76), Expect = 8.7
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = +3

Query: 171 IVCISSPLLRTAILCGSAIVQEEVNLPPTSHHLDRM 278
+V I ++RT++L G A VQE + P SHH+ RM
Sbjct: 274 MVLIYMKMMRTSVLSGYAWVQETLRTPGESHHMFRM 309


>tr|Q0UUZ8|Q0UUZ8_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_04416 PE=4 SV=1
Length = 385

Score = 33.9 bits (76), Expect = 8.7
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3

Query: 246 LPPTSHHLDRMWVVLQAIKSLDGAPMCKPKCLNAD 350
+ P +H +DR + VL+A+ S++G P+ K CL+ D
Sbjct: 68 ISPVAHQVDREYKVLKALGSVEGFPVPKVYCLSMD 102