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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951132
Clone id TST38A01NGRL0010_J07
Library
Length 456
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_J07. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
CAAGGATCAAGAGGAGCTCTATTGTCAAGCGAGAGCTGGCAAAATTGCGCAAGGGGAAAG
CTTAGGCGGATTCCATGCTCTTAAGAAGCGCAAGCTGGCAAAGCTACACAAAGTTAGCTT
TATGTCATCTATGCAGGACAAACTTTGCTATTTGCCTTTGCAACGGGAGATGTTATGAAA
TACGAGTGGAAATTTGTGATGGAAATTTTTGCTAAACAAGAATGAGTCTCCTTGAAGTTG
GACCAGCGGATCCTGTTTTTTTTTTTCCGTCTTATCAAAATGTTTGGAATCCCTCAAGAA
ATTGTGGAGTTTGAGAAAGTGTCCAAACGGCGATAGCCTGGGGCCCTTTTTAGTGGTAAA
CTATTTTTTTGCTGTCTACCTTACTGCGTAAGTAGTTCTAAGCAGCAAAAAAAATCTTTT
GTTTGTCTTTGTTTTAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O32294
Definition sp|O32294|RAPG_BACSU Response regulator aspartate phosphatase G OS=Bacillus subtilis
Align length 71
Score (bit) 30.4
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J07, 5'
         (435 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O32294|RAPG_BACSU Response regulator aspartate phosphatase G ...    30   3.4  
sp|Q6FLC5|SEY1_CANGA Protein SEY1 OS=Candida glabrata GN=SEY1 PE...    30   4.4  
sp|Q2EEX2|RPOB_HELSJ DNA-directed RNA polymerase subunit beta OS...    30   4.4  
sp|P56456|SYI_HELPY Isoleucyl-tRNA synthetase OS=Helicobacter py...    29   7.5  
sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase OS=Helicobacter py...    29   7.5  
sp|Q1CRK7|SYI_HELPH Isoleucyl-tRNA synthetase OS=Helicobacter py...    29   7.5  

>sp|O32294|RAPG_BACSU Response regulator aspartate phosphatase G
           OS=Bacillus subtilis GN=rapG PE=2 SV=1
          Length = 365

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -1

Query: 321 HFLK---LHNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKNFHHKFPLVFHNISRCKGK 151
           HF +   LHNF        K+E+        LQ D +  S  ++H   L+   + + K K
Sbjct: 205 HFFEAQLLHNFGLLHAQSGKSEEAVSKLEEALQNDEYARSAYYYHSAYLLIRELFKIKKK 264

Query: 150 *QSLSCIDDIK 118
            Q+LS   D+K
Sbjct: 265 EQALSYYQDVK 275


>sp|Q6FLC5|SEY1_CANGA Protein SEY1 OS=Candida glabrata GN=SEY1 PE=3
           SV=1
          Length = 783

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -1

Query: 306 HNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKNFHHKFPL 184
           H  L++ + +D   K   D  +  + + +L   N+HHK P+
Sbjct: 229 HKLLQEEQFYDDV-KSLGDSFIDSESNEYLLKPNYHHKLPI 268


>sp|Q2EEX2|RPOB_HELSJ DNA-directed RNA polymerase subunit beta
           OS=Helicosporidium sp. subsp. Simulium jonesii GN=rpoB
           PE=3 SV=1
          Length = 1247

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 327 FGHFLKLHNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKN 205
           F  F    N     K+  K ++KKQ    +L+ D+F+F+KN
Sbjct: 862 FEDFKNFANIFAYDKYKQKLDRKKQKKNTRLKTDNFIFNKN 902


>sp|P56456|SYI_HELPY Isoleucyl-tRNA synthetase OS=Helicobacter
           pylori GN=ileS PE=3 SV=1
          Length = 920

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 309 LHNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKNFHHKFP 187
           +HN L D  +  +   K Q  +++  GDS L  +   H +P
Sbjct: 359 IHNQLLDESYLGEHVFKAQKRIIEQLGDSLLLEQEIEHSYP 399


>sp|Q9ZJJ1|SYI_HELPJ Isoleucyl-tRNA synthetase OS=Helicobacter
           pylori J99 GN=ileS PE=3 SV=1
          Length = 920

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 309 LHNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKNFHHKFP 187
           +HN L D  +  +   K Q  +++  GDS L  +   H +P
Sbjct: 359 IHNQLLDKSYLGEHIFKAQKRIIEQLGDSLLLEREIEHSYP 399


>sp|Q1CRK7|SYI_HELPH Isoleucyl-tRNA synthetase OS=Helicobacter
           pylori (strain HPAG1) GN=ileS PE=3 SV=1
          Length = 920

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 309 LHNFLRDSKHFDKTEKKKQDPLVQLQGDSFLFSKNFHHKFP 187
           +HN L D  +  +   K Q  +++  GDS L  +   H +P
Sbjct: 359 IHNQLLDESYLGEHVFKAQKRIIEQLGDSLLLEQEIEHSYP 399
tr_hit_id A9SPE2
Definition tr|A9SPE2|A9SPE2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 20
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951132|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J07, 5'
         (435 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SPE2|A9SPE2_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|Q6R016|Q6R016_CHAGO 60S ribosomal protein L14 OS=Chara globul...    34   3.2  
tr|A9TVC0|A9TVC0_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  
tr|A9SJ11|A9SJ11_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.3  

>tr|A9SPE2|A9SPE2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214411 PE=4 SV=1
          Length = 134

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +3

Query: 3   RIKRSSIVKRELAKLRKGKA 62
           R+K+SSIV+REL KLR+GKA
Sbjct: 115 RVKKSSIVRRELGKLRRGKA 134


>tr|Q6R016|Q6R016_CHAGO 60S ribosomal protein L14 OS=Chara
           globularis PE=2 SV=1
          Length = 133

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +3

Query: 3   RIKRSSIVKRELAKLRKGKA 62
           R+KRSS+VKRELAK+RK KA
Sbjct: 114 RMKRSSLVKRELAKMRKTKA 133


>tr|A9TVC0|A9TVC0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198630 PE=4 SV=1
          Length = 134

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 3   RIKRSSIVKRELAKLRKGKA 62
           R+KRSSIV+REL KLR+ KA
Sbjct: 115 RVKRSSIVRRELGKLRREKA 134


>tr|A9SJ11|A9SJ11_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_185490 PE=4 SV=1
          Length = 133

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 15/20 (75%), Positives = 18/20 (90%)
 Frame = +3

Query: 3   RIKRSSIVKRELAKLRKGKA 62
           R+KRSSIV+REL KLR+ KA
Sbjct: 114 RVKRSSIVRRELGKLRREKA 133