DK951140 |
Clone id |
TST38A01NGRL0010_J15 |
Library |
TST38 |
Length |
550 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_J15. 5' end sequence. |
Accession |
DK951140 |
Tissue type |
prothallia |
Developmental stage |
gametophyte |
Contig ID |
CL1251Contig1 |
Sequence |
ATGGCTCCCAAGAAGGATAAGGCCTCCTCTGCCCCCTCGAAACCTGCCAAGAGTAGTGGA GGCGGCTAGCAGAAGAAGAAGAAATGGAGCAAAGGAAAGCAAAAGGAGAAAGTGAACTAC ATGGTCTTGTTTGATCAAGCGACATATGATAAGCTACTGTCAGAGGTGCCGAAGTACAAG CTCATTACACCTTCTATCATCTCGGATCGACTAAGAATAAATGGATCACTTGCTCGGAAG GCTATTAGGGAGTTAACTGATCGTGGCACAATCGGGCTGGTGGCAGCTCATGCAAACCAG CAAATCTATACACGGGCTACTAACACCTAGTTTTTCTAATTGGGGCTATTAACGCTTCTA TGTGAGTTTCTAGCACTCTTCGCAATCCTTACGATGTTCGTTTGGGAGATTGGCCAGTCT CCCGCTTTTGTGCACTAGAGTGTTTGCTGGACTGGCCTCTCTTTTGTACCTGCTCGGATG AATATACTACTTTGTTTCTGACAGAGATTTATCTGCACTTTGGGTGTACGAATCTTGCAG AAATTGTGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46301 |
Definition |
sp|P46301|RS25_SOLLC 40S ribosomal protein S25 OS=Solanum lycopersicum |
Align length |
72 |
Score (bit) |
116.0 |
E-value |
8.0e-26 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RYT1 |
Definition |
tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
72 |
Score (bit) |
122.0 |
E-value |
1.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951140|Adiantum capillus-veneris mRNA, clone: TST38A01NGRL0010_J15, 5' (550 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella paten... 122 1e-26 tr|A9RSW5|A9RSW5_PHYPA Predicted protein OS=Physcomitrella paten... 122 1e-26 tr|A9S9T4|A9S9T4_PHYPA Predicted protein (Fragment) OS=Physcomit... 120 4e-26 tr|A9RPL4|A9RPL4_PHYPA Predicted protein OS=Physcomitrella paten... 120 4e-26 tr|Q6VEV1|Q6VEV1_SOYBN 40S ribosomal protein S25 (Fragment) OS=G... 120 5e-26 tr|A9NKH7|A9NKH7_PICSI Putative uncharacterized protein OS=Picea... 118 2e-25 tr|A9PDP8|A9PDP8_POPTR Putative uncharacterized protein OS=Popul... 118 2e-25 tr|B0BLI2|B0BLI2_LOTJA CM0216.350.nc protein (Fragment) OS=Lotus... 117 3e-25 tr|B0FSK2|B0FSK2_9MAGN Ribosomal protein S25 OS=Adonis aestivali... 117 4e-25 tr|A7QUW2|A7QUW2_VITVI Chromosome chr13 scaffold_181, whole geno... 117 5e-25 tr|A9PAD1|A9PAD1_POPTR Putative uncharacterized protein OS=Popul... 116 7e-25 tr|B3H4B6|B3H4B6_ARATH Uncharacterized protein At4g39200.2 OS=Ar... 116 9e-25 tr|B7FGM7|B7FGM7_MEDTR Putative uncharacterized protein OS=Medic... 115 1e-24 tr|A9NT78|A9NT78_PICSI Putative uncharacterized protein OS=Picea... 115 1e-24 tr|B7FH10|B7FH10_MEDTR Putative uncharacterized protein OS=Medic... 114 3e-24 tr|B6SMC3|B6SMC3_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 113 6e-24 tr|A7QL29|A7QL29_VITVI Chromosome undetermined scaffold_116, who... 113 6e-24 tr|Q2V471|Q2V471_ARATH Uncharacterized protein At2g21580.2 OS=Ar... 113 8e-24 tr|A5BRH6|A5BRH6_VITVI Putative uncharacterized protein OS=Vitis... 113 8e-24 tr|Q652P8|Q652P8_ORYSJ Os09g0568800 protein OS=Oryza sativa subs... 112 2e-23 tr|A2Z480|A2Z480_ORYSI Putative uncharacterized protein OS=Oryza... 112 2e-23 tr|B4FSL2|B4FSL2_MAIZE Putative uncharacterized protein OS=Zea m... 111 2e-23 tr|B6SX33|B6SX33_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 110 4e-23 tr|Q6YZI2|Q6YZI2_ORYSJ Os08g0559200 protein OS=Oryza sativa subs... 110 6e-23 tr|A7P8X9|A7P8X9_VITVI Chromosome chr3 scaffold_8, whole genome ... 110 6e-23 tr|A3BVR1|A3BVR1_ORYSJ Putative uncharacterized protein OS=Oryza... 110 6e-23 tr|B4FXK8|B4FXK8_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 109 8e-23 tr|B4FG22|B4FG22_MAIZE 40S ribosomal protein S25-1 OS=Zea mays P... 109 1e-22 tr|Q53QG2|Q53QG2_ORYSJ cDNA clone:001-018-C09, full insert seque... 104 3e-21 tr|Q0IUI8|Q0IUI8_ORYSJ Os11g0153800 protein (Fragment) OS=Oryza ... 104 3e-21
>tr|A9RYT1|A9RYT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_56445 PE=4 SV=1 Length = 108
Score = 122 bits (306), Expect = 1e-26 Identities = 61/72 (84%), Positives = 67/72 (93%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQATYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTI LVAAH Sbjct: 37 VNNMVLFDQATYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 292 ANQQIYTRATNT 327 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|A9RSW5|A9RSW5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_118815 PE=4 SV=1 Length = 108
Score = 122 bits (306), Expect = 1e-26 Identities = 61/72 (84%), Positives = 67/72 (93%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQATYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTI LVAAH Sbjct: 37 VNNMVLFDQATYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 292 ANQQIYTRATNT 327 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|A9S9T4|A9S9T4_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126254 PE=4 SV=1 Length = 83
Score = 120 bits (302), Expect = 4e-26 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQ TYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTI LVAAH Sbjct: 12 VNNMVLFDQGTYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 71
Query: 292 ANQQIYTRATNT 327 ANQQIYTRATNT Sbjct: 72 ANQQIYTRATNT 83
>tr|A9RPL4|A9RPL4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177001 PE=4 SV=1 Length = 108
Score = 120 bits (302), Expect = 4e-26 Identities = 60/72 (83%), Positives = 66/72 (91%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQ TYDKLLSEVPK+KL+TPS++SDRLRI GSLARKAI+EL +GTI LVAAH Sbjct: 37 VNNMVLFDQGTYDKLLSEVPKFKLVTPSVLSDRLRITGSLARKAIKELMAKGTIRLVAAH 96
Query: 292 ANQQIYTRATNT 327 ANQQIYTRATNT Sbjct: 97 ANQQIYTRATNT 108
>tr|Q6VEV1|Q6VEV1_SOYBN 40S ribosomal protein S25 (Fragment) OS=Glycine max PE=2 SV=1 Length = 94
Score = 120 bits (301), Expect = 5e-26 Identities = 61/72 (84%), Positives = 66/72 (91%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN VLFDQATYDKLLSE PKYKLITPSI+SDRLRINGSLARKAIREL RG+I +V+AH Sbjct: 23 VNNQVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIRELMARGSIRMVSAH 82
Query: 292 ANQQIYTRATNT 327 A+QQIYTRATNT Sbjct: 83 ASQQIYTRATNT 94
>tr|A9NKH7|A9NKH7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 108
Score = 118 bits (296), Expect = 2e-25 Identities = 58/72 (80%), Positives = 67/72 (93%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQATYDKLLSE PKYKLITPSI+SDRLRINGSLARKAI++L RG+I +++AH Sbjct: 37 VNNMVLFDQATYDKLLSEAPKYKLITPSILSDRLRINGSLARKAIKDLMARGSIRMISAH 96
Query: 292 ANQQIYTRATNT 327 ++QQIYTRATNT Sbjct: 97 SSQQIYTRATNT 108
>tr|A9PDP8|A9PDP8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 108
Score = 118 bits (295), Expect = 2e-25 Identities = 58/72 (80%), Positives = 67/72 (93%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQATYDKLLSE PKYKLITPS++SDR+RI+GSLARKAIREL RG+I +V++H Sbjct: 37 VNNMVLFDQATYDKLLSEAPKYKLITPSVLSDRMRISGSLARKAIRELMARGSIRMVSSH 96
Query: 292 ANQQIYTRATNT 327 A+QQIYTRATNT Sbjct: 97 ASQQIYTRATNT 108
>tr|B0BLI2|B0BLI2_LOTJA CM0216.350.nc protein (Fragment) OS=Lotus japonicus GN=CM0216.350.nc PE=4 SV=1 Length = 108
Score = 117 bits (294), Expect = 3e-25 Identities = 58/72 (80%), Positives = 66/72 (91%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQ TYDKLLSE PK+KLITPSI+SDRLR+NGSLAR+AIREL RG+I +V+AH Sbjct: 37 VNNMVLFDQGTYDKLLSEAPKFKLITPSILSDRLRVNGSLARRAIRELMARGSIRMVSAH 96
Query: 292 ANQQIYTRATNT 327 A+QQIYTRATNT Sbjct: 97 ASQQIYTRATNT 108
>tr|B0FSK2|B0FSK2_9MAGN Ribosomal protein S25 OS=Adonis aestivalis var. palaestina PE=4 SV=1 Length = 109
Score = 117 bits (293), Expect = 4e-25 Identities = 56/72 (77%), Positives = 67/72 (93%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQA+YDKLLSE PKYKLITPSI+SDRLR+NGSLAR+AI++LT +G I +++AH Sbjct: 38 VNNMVLFDQASYDKLLSEAPKYKLITPSILSDRLRVNGSLARRAIKDLTAKGAIRMISAH 97
Query: 292 ANQQIYTRATNT 327 A+QQIYTRATNT Sbjct: 98 ASQQIYTRATNT 109
>tr|A7QUW2|A7QUW2_VITVI Chromosome chr13 scaffold_181, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007016001 PE=4 SV=1 Length = 110
Score = 117 bits (292), Expect = 5e-25 Identities = 58/71 (81%), Positives = 66/71 (92%) Frame = +1
Query: 112 VNYMVLFDQATYDKLLSEVPKYKLITPSIISDRLRINGSLARKAIRELTDRGTIGLVAAH 291 VN MVLFDQ TYDKLLSEVPKYKLITPSI+SDRLRINGSLAR+AI++L RG+I +V+AH Sbjct: 39 VNNMVLFDQGTYDKLLSEVPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAH 98
Query: 292 ANQQIYTRATN 324 A+QQIYTRATN Sbjct: 99 ASQQIYTRATN 109
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