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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951147
Clone id TST38A01NGRL0010_J23
Library
Length 686
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_J23. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
GTTTTACGTGGAACGGACGTTTTGGGCTCGTTGCAGAGAGCGAGCAAGAAGAAAGTGTTG
TTGAAGTGGGTGTAGCTCGTCAGCCTGCTCGATGCAGCCTCAATGGCGAGGCCCACTTCA
AAGCTGGCGGCGGCACTGCGAGCTCTGCAGACACGGACGCCTGCATTGGACAAACAAAGA
CGACTACCCGATGTTTTAGACTTGTGGGTCGTGAAGCAAAAGGGTGTGGCGTACACAGGA
AGGTGTGAAGGAAATTGGATCAGCAGGCGCCATTGCCACGGCTACGTTGAACCCTTTTCT
CAAGTGAAGCTTGCCCCCAAACGTCTGAGCCTGCGCATAATTAGTAGCAAAACCGAGGCT
GATGTTTTCTTAGCCCCCCCCCCAATCCACATGAAGAGCAAGTTAACAAAAAAGCATCTT
CCTCCTCCCGCGATGAACGGAATCCGTTTAGTGGTGGTGTTAAATACAGTGTAATCAGAA
TCAATGACATTGGCACTTGGGAGCCTCTCATCCTGAACACATCTGAACTGGGTGTACATG
CAAAGGACTTGGACCTTCTCGCCGGTAATTTTTTTATTCCGAAGCGGTCTGCTATTGCTG
TAAGAAACAATCAGATTCTTATCAGAATGGAAAACGTACGGGCCTTAATTTGCAAAAATC
ATTGTTTATTGTTTGATGCTCATCGT
■■Homology search results ■■ -
sp_hit_id Q5R447
Definition sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog, mitochondrial OS=Pongo abelii
Align length 51
Score (bit) 32.0
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951147|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J23, 5'
         (686 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog, mitocho...    32   3.2  
sp|Q4R4M1|MRS2_MACFA Magnesium transporter MRS2 homolog, mitocho...    32   3.2  
sp|Q9HD23|MRS2_HUMAN Magnesium transporter MRS2 homolog, mitocho...    32   3.2  
sp|Q59S85|LPE10_CANAL Mitochondrial inner membrane magnesium tra...    32   3.2  
sp|A6H5F7|RPOC2_CYCTA DNA-directed RNA polymerase subunit beta''...    31   5.4  
sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium tran...    31   5.4  
sp|A2T322|RPOC2_ANGEV DNA-directed RNA polymerase subunit beta''...    30   9.2  
sp|Q68FW2|CDCA3_RAT Cell division cycle-associated protein 3 OS=...    30   9.2  

>sp|Q5R447|MRS2_PONAB Magnesium transporter MRS2 homolog,
           mitochondrial OS=Pongo abelii GN=MRS2 PE=2 SV=1
          Length = 443

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 525 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 677
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q4R4M1|MRS2_MACFA Magnesium transporter MRS2 homolog,
           mitochondrial OS=Macaca fascicularis GN=MRS2 PE=2 SV=1
          Length = 408

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 525 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 677
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q9HD23|MRS2_HUMAN Magnesium transporter MRS2 homolog,
           mitochondrial OS=Homo sapiens GN=MRS2 PE=2 SV=1
          Length = 443

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 525 ELGVHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFD 677
           ELG+ A+DL             +I VRNN+I++RME ++A+I     L+ D
Sbjct: 110 ELGLQARDLRF-------QHVMSITVRNNRIIMRMEYLKAVITPECLLILD 153


>sp|Q59S85|LPE10_CANAL Mitochondrial inner membrane magnesium
           transporter LPE10 OS=Candida albicans GN=LPE10 PE=3 SV=1
          Length = 453

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
 Frame = +3

Query: 414 ASSSSRDERNPFSGGVKYSVIRINDIG---TWEPLILNTSELGVHAKDLDLLAGNFFIPK 584
           +SSSS       SG  K S +  +      T   L L+ S LG  + ++D++        
Sbjct: 114 SSSSSSSAGQTSSGTSKSSSLSSSSSSPHSTISALSLSNSSLG-SSTNVDIVPN------ 166

Query: 585 RSAIAVRNNQILIRMENVRALICKNHCLLFD 677
              I +R N IL+++ N+RALI  +  ++FD
Sbjct: 167 ---ITIRRNSILVQLLNIRALINHDQLIIFD 194


>sp|A6H5F7|RPOC2_CYCTA DNA-directed RNA polymerase subunit beta''
           OS=Cycas taitungensis GN=rpoC2 PE=3 SV=1
          Length = 1339

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
 Frame = +3

Query: 450 SGGVKYSVIRINDIGTWEPLILNTSELGVHAKDLDLLAGNF-FIPKR-------SAIAVR 605
           SG +KY  I+++ IG  E  + +    G  +KD  +  G F FIP+        S+I V+
Sbjct: 629 SGIIKYGTIKVDSIGNKENYLGDQRARGFRSKD-KMKGGRFLFIPEEVHILYESSSIMVQ 687

Query: 606 NNQIL 620
           NN I+
Sbjct: 688 NNSII 692


>sp|P87149|MRS2_SCHPO Mitochondrial inner membrane magnesium
           transporter mrs2 OS=Schizosaccharomyces pombe GN=mrs2
           PE=2 SV=1
          Length = 422

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 21/80 (26%)
 Frame = +3

Query: 507 LILNTSELGVHA---------KDLDLLAGNFFIPKR------------SAIAVRNNQILI 623
           L++N +E   H          K +DL   N  +P+               I VR   ILI
Sbjct: 78  LLMNCTEFDDHGNVRVISGDFKKMDLCKQNGLLPRDLRKLNTSINSIVPVILVREGSILI 137

Query: 624 RMENVRALICKNHCLLFDAH 683
            + ++RALI  N  LLFD +
Sbjct: 138 NLLHIRALIKANSVLLFDVY 157


>sp|A2T322|RPOC2_ANGEV DNA-directed RNA polymerase subunit beta''
           OS=Angiopteris evecta GN=rpoC2 PE=3 SV=1
          Length = 1414

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
 Frame = +3

Query: 369 LSPPPNPHEEQVNKKASSSSRDERNPFSGGVKYSVIRINDIGTWEPLILNTSELGVHAKD 548
           L  P N    Q +  A S S   +   SG +KY  I+++ +G  E +  N       ++ 
Sbjct: 593 LDIPNNGILNQGDILAISESPQYQTEISGIIKYGTIKVDSVGKREYIGDNEKTTTFRSRY 652

Query: 549 LDLLAGNFF-IPKR--------SAIAVRNNQIL 620
             L  GNFF IP+         S I V NN I+
Sbjct: 653 KILKGGNFFLIPEEVYTIYQPSSHIFVSNNSII 685


>sp|Q68FW2|CDCA3_RAT Cell division cycle-associated protein 3
           OS=Rattus norvegicus GN=Cdca3 PE=2 SV=1
          Length = 273

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = +3

Query: 372 SPPPNPHEEQVNKKASSSSRDERNPFSGGVKYSVIRINDIGTWEPLILNTSEL 530
           SP PNP  EQ+N    +   D R+P + G+  + ++I+   +  PL+   SE+
Sbjct: 44  SPQPNPPAEQLNSLKQAQDPDPRSP-TLGIARTPMKISGPDSQCPLVKELSEV 95
tr_hit_id A9THK8
Definition tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 93
Score (bit) 96.7
E-value 1.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951147|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_J23, 5'
         (686 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella paten...    97   1e-18
tr|A9TBD5|A9TBD5_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.31 
tr|Q9FXX5|Q9FXX5_ARATH Genomic DNA, chromosome 5, P1 clone: MTH1...    36   2.6  
tr|Q8H1G8|Q8H1G8_ARATH MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7 ...    36   2.6  
tr|Q8H1G7|Q8H1G7_ARATH MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8 ...    36   2.6  
tr|Q682I2|Q682I2_ARATH MRNA, complete cds, clone: RAFL21-82-H21 ...    36   2.6  
tr|Q3E9J2|Q3E9J2_ARATH Uncharacterized protein At5g09690.2 OS=Ar...    36   2.6  
tr|Q304A0|Q304A0_ARATH Mg2+ transporter protein MGT7 OS=Arabidop...    36   2.6  
tr|Q303Z9|Q303Z9_ARATH Uncharacterized protein At5g09690.3 (Puta...    36   2.6  
tr|Q206Z2|Q206Z2_ARATH Truncated Mg2+ transporter protein MGT7 O...    36   2.6  
tr|Q86H97|Q86H97_DICDI Similar to putative mitochondrial rna spl...    35   3.4  
tr|Q553K8|Q553K8_DICDI Putative uncharacterized protein OS=Dicty...    35   3.4  
tr|B0CU41|B0CU41_LACBS Predicted protein OS=Laccaria bicolor (st...    35   5.9  

>tr|A9THK8|A9THK8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_92861 PE=4 SV=1
          Length = 586

 Score = 96.7 bits (239), Expect = 1e-18
 Identities = 42/93 (45%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
 Frame = +3

Query: 411 KASSSSRDERNPFSGGVKYSVIRINDIGTWEPLILNTSELGVHAKDLDLLA-GNFFIPKR 587
           K +      +    GG K++V+RI+D G+W  L L TSE  +H +D+DLLA    F+P+R
Sbjct: 104 KNTEGKNPPKKVLDGGAKFNVVRIDDDGSWHHLSLRTSEFNIHPRDIDLLARSKSFVPQR 163

Query: 588 SAIAVRNNQILIRMENVRALICKNHCLLFDAHR 686
           + I+VRN ++++RMENVRAL+C++H +LF+A R
Sbjct: 164 ATISVRNEKVIVRMENVRALVCRDHAILFEARR 196


>tr|A9TBD5|A9TBD5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_169118 PE=4 SV=1
          Length = 436

 Score = 38.9 bits (89), Expect = 0.31
 Identities = 15/23 (65%), Positives = 21/23 (91%)
 Frame = +3

Query: 618 LIRMENVRALICKNHCLLFDAHR 686
           ++RMENVRAL+C++H LLF+A R
Sbjct: 1   MVRMENVRALLCRDHVLLFEARR 23


>tr|Q9FXX5|Q9FXX5_ARATH Genomic DNA, chromosome 5, P1 clone: MTH16
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 413

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q8H1G8|Q8H1G8_ARATH MRS2-7 OS=Arabidopsis thaliana GN=MRS2-7
           PE=2 SV=1
          Length = 386

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q8H1G7|Q8H1G7_ARATH MRS2-8 OS=Arabidopsis thaliana GN=MRS2-8
           PE=2 SV=1
          Length = 380

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 46  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAKEVLIQDS 92


>tr|Q682I2|Q682I2_ARATH MRNA, complete cds, clone: RAFL21-82-H21
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 294

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 46  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAKEVLIQDS 92


>tr|Q3E9J2|Q3E9J2_ARATH Uncharacterized protein At5g09690.2
           OS=Arabidopsis thaliana GN=At5g09690 PE=4 SV=1
          Length = 397

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 65  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 111


>tr|Q304A0|Q304A0_ARATH Mg2+ transporter protein MGT7 OS=Arabidopsis
           thaliana GN=MGT7 PE=2 SV=1
          Length = 386

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q303Z9|Q303Z9_ARATH Uncharacterized protein At5g09690.3
           (Putative uncharacterized protein At5g09690)
           OS=Arabidopsis thaliana GN=At5g09690 PE=2 SV=2
          Length = 327

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100


>tr|Q206Z2|Q206Z2_ARATH Truncated Mg2+ transporter protein MGT7
           OS=Arabidopsis thaliana GN=MGT7 PE=2 SV=1
          Length = 371

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 534 VHAKDLDLLAGNFFIPKRSAIAVRNNQILIRMENVRALICKNHCLLFDA 680
           +HA+DL +L  N F P  SAI  R   I++ +E+++A+I     L+ D+
Sbjct: 54  IHARDLRILDPNLFYP--SAILGRERAIVLNLEHIKAIITAEEVLIRDS 100