DK951152
Clone id TST38A01NGRL0010_K05
Library
Length 651
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_K05. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence
AATCAAGACCCTAGGTGCATGATGCTCTTGCTCTATCAACGGAGCTAGCATTGATTGATA
GTTTAGAGATGAGCTGAGCCCAAAGGAAAAGACAACACCGATGGCCTTCGAGGGGACAAC
TGCAAAGGTGGCCGATAGGCTTTCTCAGAGTGTCCTCTCCGTCCACAACCTTGCAGAGCT
CATCCGTAACACCTCCCCTATCCAGGCTAATGCTAAGCTGCCCAAGGAACTATTGGCAAA
AGCTTCAAGCATCAAGAATATAGGAGTGCTTCTGCAGCAAATGCCAGGGGTTATTGCTGC
CTTGGATGCTCATTCAGATAAGTCTCTTGTAAGCTTCTCAGAACTAGAGACGATCCTTTC
GCTTTTGAACCAGCAGACGAATGCAGACAAGCAGTCAAATCCTTGAAAAGATGGAAATCA
GCAAGATCTTTGATTACTTGTCAACTATTGCGTTCAGCCCTTGTTCCATCTATTATTTTT
GTACATTCGGATAGTTTAACATGCTTTACCTTCCACTTGTACATTACAAATTGAGCTTTA
AGATTGCTTTTTCAGTTCCTTGGTACTGCGTACTGCTGAGACCTTGGGACCGCTGAAGAC
TATAAATGACTTTGGAAAAATTGTATTTTTATATGAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8YVT9
Definition sp|Q8YVT9|TGT_ANASP Queuine tRNA-ribosyltransferase OS=Anabaena sp. (strain PCC 7120)
Align length 56
Score (bit) 31.6
E-value 3.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951152|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_K05, 5'
(635 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8YVT9|TGT_ANASP Queuine tRNA-ribosyltransferase OS=Anabaena ... 32 3.6
sp|O94294|SOG2_SCHPO Leucine-rich repeat-containing protein sog2... 31 4.7
sp|P17460|RDRP_TCV Probable RNA-directed RNA polymerase OS=Turni... 31 4.7
sp|A7ZCV2|CH60_CAMC1 60 kDa chaperonin OS=Campylobacter concisus... 31 6.1
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein OS=Ga... 30 8.0
sp|A7GZ43|CH60_CAMC5 60 kDa chaperonin OS=Campylobacter curvus (... 30 8.0

>sp|Q8YVT9|TGT_ANASP Queuine tRNA-ribosyltransferase OS=Anabaena sp.
(strain PCC 7120) GN=tgt PE=3 SV=2
Length = 374

Score = 31.6 bits (70), Expect = 3.6
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Frame = +2

Query: 62 FRDELSPKEKTTPM--------AFEGTTAKVADRLSQSVLSVHNLAELIRNTSPIQ 205
FR++ +P ++T P A+ + + L+ ++LS+HN+ ELIR T I+
Sbjct: 295 FREDFAPIDETCPCYACQNFSRAYISHLVRSQEILAYTLLSIHNITELIRFTQKIR 350


>sp|O94294|SOG2_SCHPO Leucine-rich repeat-containing protein sog2
OS=Schizosaccharomyces pombe GN=sog2 PE=1 SV=1
Length = 886

Score = 31.2 bits (69), Expect = 4.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Frame = +2

Query: 149 SVLSVHNLAELIRN----TSPIQANAKLPKELLAKASSIKNIGVLLQQMPGVIAALDAHS 316
S +S+ +A+ RN T+ ++ +LP +L + ++K L +Q+P I A D H
Sbjct: 404 SAISLPEVAKKERNRSNSTNDDYSSTRLPSSVLHRLEALKEARKLSEQLPNRIFAQDPHP 463

Query: 317 DKSLVSFSELETILSLLNQQTNA 385
L E +L N N+
Sbjct: 464 SPRLKKEETHENGSNLTNDSVNS 486


>sp|P17460|RDRP_TCV Probable RNA-directed RNA polymerase OS=Turnip
crinkle virus PE=4 SV=2
Length = 775

Score = 31.2 bits (69), Expect = 4.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Frame = +1

Query: 265 SASAANARGYCCLGCSF-----R*VSCKLLRTRDDPFAFEPADECRQAVKSLKRW 414
S A G C L CS + + CKL+ DD F ADE + + L W
Sbjct: 539 SGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVLFFEADEVDRVRERLHHW 593


>sp|A7ZCV2|CH60_CAMC1 60 kDa chaperonin OS=Campylobacter concisus
(strain 13826) GN=groL PE=3 SV=1
Length = 544

Score = 30.8 bits (68), Expect = 6.1
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +2

Query: 89 KTTPMAFEGTTAKVADRLSQSVLSVHNLAELIRNTSPIQANAKLPKELLAKASSIKNIGV 268
KT A +GTT A L+ ++ L + +PI+ + KE+ A ++KNI
Sbjct: 79 KTNDQAGDGTTT--ATVLAHAIFK-EGLRNVTAGANPIEVKRGMDKEVAALIDALKNISK 135

Query: 269 LLQQMPGV--IAALDAHSDKSL 328
+ + IA + A+SD+S+
Sbjct: 136 KVSGSKEIAQIATISANSDESI 157


>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein
OS=Gallus gallus GN=CRIM1 PE=2 SV=1
Length = 1048

Score = 30.4 bits (67), Expect = 8.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1

Query: 328 CKLLRTRDDPFAFEPADECRQAVKSLKRWKSARSLITCQLLRSALVP 468
C +RT ++PF F D C A+K ++ K S C++ S P
Sbjct: 154 CDTIRTCNNPFEFPSRDTCLSALKRIEEEKPDCSKARCEVQFSPRCP 200


>sp|A7GZ43|CH60_CAMC5 60 kDa chaperonin OS=Campylobacter curvus
(strain 525.92) GN=groL PE=3 SV=1
Length = 544

Score = 30.4 bits (67), Expect = 8.0
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2

Query: 89 KTTPMAFEGTTAKVADRLSQSVLSVHNLAELIRNTSPIQANAKLPKELLAKASSIKNIGV 268
KT A +GTT A L+ ++ L + +PI+ + KE+ A +KNI
Sbjct: 79 KTNDQAGDGTTT--ATVLAHAIFK-EGLRNVTAGANPIEVKRGMDKEVAALIDELKNIAK 135

Query: 269 LLQQMPGV--IAALDAHSDKSL 328
+ + IA + A+SD+S+
Sbjct: 136 KVSGSKEIAQIATISANSDESI 157


tr_hit_id Q6ET30
Definition tr|Q6ET30|Q6ET30_ORYSJ Putative tobamovirus multiplication protein 2B (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 96
Score (bit) 84.7
E-value 4.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951152|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_K05, 5'
(635 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q6ET30|Q6ET30_ORYSJ Putative tobamovirus multiplication prote... 85 4e-15
tr|Q0E223|Q0E223_ORYSJ Os02g0279600 protein OS=Oryza sativa subs... 85 4e-15
tr|A2X3G0|A2X3G0_ORYSI Putative uncharacterized protein OS=Oryza... 85 4e-15
tr|A7PCE6|A7PCE6_VITVI Chromosome chr2 scaffold_11, whole genome... 81 6e-14
tr|B6UD52|B6UD52_MAIZE TOM2B OS=Zea mays PE=2 SV=1 77 1e-12
tr|B6TGV7|B6TGV7_MAIZE TOM2B OS=Zea mays PE=2 SV=1 77 1e-12
tr|B6SX44|B6SX44_MAIZE TOM2B OS=Zea mays PE=2 SV=1 76 2e-12
tr|Q9LQM1|Q9LQM1_ARATH F5D14.14 protein OS=Arabidopsis thaliana ... 72 4e-11
tr|Q8L9F1|Q8L9F1_ARATH Putative uncharacterized protein OS=Arabi... 72 4e-11
tr|Q8H960|Q8H960_ARATH Tobamovirus multiplication 2B (At1g32370)... 72 4e-11
tr|Q682B7|Q682B7_ARATH Putative uncharacterized protein At1g3237... 72 4e-11
tr|Q2V4J7|Q2V4J7_ARATH Uncharacterized protein At1g32370.3 OS=Ar... 72 4e-11
tr|A5APS0|A5APS0_VITVI Putative uncharacterized protein OS=Vitis... 36 2.2
tr|B7ANT4|B7ANT4_9BACE Putative uncharacterized protein OS=Bacte... 35 5.0
tr|Q9BIF4|Q9BIF4_CAEEL EHS-1 OS=Caenorhabditis elegans GN=ehs-1 ... 35 5.0
tr|Q8IFX4|Q8IFX4_CAEEL Eps15 (Endocytosis protein) homologous se... 35 5.0
tr|Q23418|Q23418_CAEEL Eps15 (Endocytosis protein) homologous se... 35 5.0
tr|Q7RJV4|Q7RJV4_PLAYO Putative uncharacterized protein PY03152 ... 34 6.5
tr|B2Q1S8|B2Q1S8_PROST Putative uncharacterized protein OS=Provi... 34 8.4

>tr|Q6ET30|Q6ET30_ORYSJ Putative tobamovirus multiplication protein
2B (Putative uncharacterized protein) OS=Oryza sativa
subsp. japonica GN=P0444A09.25 PE=4 SV=1
Length = 130

Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A VA++++Q+V S NL +L+ +SP QA+ AKLPK+LLAKAS KN G +L Q+P
Sbjct: 13 GAQAAVAEQIAQAVQSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPS 72

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTNADKQS 397
VI++LDA+ D SL S S+++T+ LL+ N +S
Sbjct: 73 VISSLDAYMDASLQSASQIKTVTQLLSNMENNQLRS 108


>tr|Q0E223|Q0E223_ORYSJ Os02g0279600 protein OS=Oryza sativa subsp.
japonica GN=Os02g0279600 PE=4 SV=1
Length = 121

Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A VA++++Q+V S NL +L+ +SP QA+ AKLPK+LLAKAS KN G +L Q+P
Sbjct: 13 GAQAAVAEQIAQAVQSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPS 72

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTNADKQS 397
VI++LDA+ D SL S S+++T+ LL+ N +S
Sbjct: 73 VISSLDAYMDASLQSASQIKTVTQLLSNMENNQLRS 108


>tr|A2X3G0|A2X3G0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_06749 PE=4 SV=1
Length = 130

Score = 84.7 bits (208), Expect = 4e-15
Identities = 46/96 (47%), Positives = 67/96 (69%), Gaps = 1/96 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A VA++++Q+V S NL +L+ +SP QA+ AKLPK+LLAKAS KN G +L Q+P
Sbjct: 13 GAQAAVAEQIAQAVQSTSNLLQLMEESSPAQAHLAKLPKKLLAKASLAKNTGQVLHQLPS 72

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTNADKQS 397
VI++LDA+ D SL S S+++T+ LL+ N +S
Sbjct: 73 VISSLDAYMDASLQSASQIKTVTQLLSNMENNQLRS 108


>tr|A7PCE6|A7PCE6_VITVI Chromosome chr2 scaffold_11, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00015831001
PE=4 SV=1
Length = 182

Score = 80.9 bits (198), Expect = 6e-14
Identities = 47/95 (49%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Frame = +2

Query: 122 AKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPGVIA 298
A +AD++SQSV S NL L++ +SP A KLPK LLAK S+IKN G LL+QMP VI+
Sbjct: 30 ATMADQISQSVQSTSNLLHLMQQSSPSHAQLTKLPKNLLAKTSTIKNTGQLLEQMPRVIS 89

Query: 299 ALDAHSDKSLVSFSELETILSLLNQQTNADKQSNP 403
+LDAH + L S L+T++ LL + Q NP
Sbjct: 90 SLDAHIESGLQSVPHLKTVIQLLANMESC--QLNP 122


>tr|B6UD52|B6UD52_MAIZE TOM2B OS=Zea mays PE=2 SV=1
Length = 125

Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A VA++++Q+V S NL +L+ +SP Q + AKLPK LL KAS KN +L Q+P
Sbjct: 12 GANAAVAEQIAQAVRSTSNLLQLMEQSSPAQVHLAKLPKNLLEKASFAKNTDHVLHQLPQ 71

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTNADKQS 397
VI++LDA+ D+SL S S+++T+ LL+ +S
Sbjct: 72 VISSLDAYLDRSLQSASQIKTVTQLLSNMEKTQLKS 107


>tr|B6TGV7|B6TGV7_MAIZE TOM2B OS=Zea mays PE=2 SV=1
Length = 128

Score = 76.6 bits (187), Expect = 1e-12
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A VA++++Q+V S NL +L+ +SP Q + AKLPK LL KAS KN +L Q+P
Sbjct: 12 GANAAVAEQIAQAVRSTSNLLQLMEQSSPAQVHLAKLPKNLLEKASFAKNTEHVLHQLPQ 71

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTNADKQS 397
VI++LDA+ D+SL S S+++T+ LL+ +S
Sbjct: 72 VISSLDAYMDRSLQSASQIKTVTQLLSNMEKTQLKS 107


>tr|B6SX44|B6SX44_MAIZE TOM2B OS=Zea mays PE=2 SV=1
Length = 123

Score = 75.9 bits (185), Expect = 2e-12
Identities = 41/91 (45%), Positives = 61/91 (67%), Gaps = 1/91 (1%)
Frame = +2

Query: 113 GTTAKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPG 289
G A V ++++Q+V S NL +L+ +SP Q + AKLPK LL KAS KN +L Q+P
Sbjct: 12 GAKAAVTEQIAQAVRSTSNLLQLMEQSSPAQVHLAKLPKNLLEKASFAKNTKHVLHQLPQ 71

Query: 290 VIAALDAHSDKSLVSFSELETILSLLNQQTN 382
VI++LDA+ D+SL S S+++T+ LL+ N
Sbjct: 72 VISSLDAYMDRSLQSASQIKTVTQLLSNMEN 102


>tr|Q9LQM1|Q9LQM1_ARATH F5D14.14 protein OS=Arabidopsis thaliana
GN=F5D14.14 PE=4 SV=1
Length = 536

Score = 71.6 bits (174), Expect = 4e-11
Identities = 48/98 (48%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Frame = +2

Query: 122 AKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPGVIA 298
A VAD++SQ+V S NL L+R +S QA AKLPK LLAKAS K G L Q+P VI+
Sbjct: 20 AVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQALAQLPQVIS 79

Query: 299 ALDAHSDKSLVSFSELETILSLL----NQQTNADKQSN 400
+LDAH + L S L T+ LL + Q A +QSN
Sbjct: 80 SLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQSN 117


>tr|Q8L9F1|Q8L9F1_ARATH Putative uncharacterized protein
OS=Arabidopsis thaliana PE=2 SV=1
Length = 131

Score = 71.6 bits (174), Expect = 4e-11
Identities = 48/98 (48%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Frame = +2

Query: 122 AKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPGVIA 298
A VAD++SQ+V S NL L+R +S QA AKLPK LLAKAS K G L Q+P VI+
Sbjct: 20 AVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQALAQLPQVIS 79

Query: 299 ALDAHSDKSLVSFSELETILSLL----NQQTNADKQSN 400
+LDAH + L S L T+ LL + Q A +QSN
Sbjct: 80 SLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQSN 117


>tr|Q8H960|Q8H960_ARATH Tobamovirus multiplication 2B (At1g32370)
OS=Arabidopsis thaliana GN=TOM2B PE=2 SV=2
Length = 122

Score = 71.6 bits (174), Expect = 4e-11
Identities = 48/98 (48%), Positives = 60/98 (61%), Gaps = 5/98 (5%)
Frame = +2

Query: 122 AKVADRLSQSVLSVHNLAELIRNTSPIQAN-AKLPKELLAKASSIKNIGVLLQQMPGVIA 298
A VAD++SQ+V S NL L+R +S QA AKLPK LLAKAS K G L Q+P VI+
Sbjct: 20 AVVADQISQAVNSTANLLHLMRQSSSSQAQLAKLPKNLLAKASLTKATGQALAQLPQVIS 79

Query: 299 ALDAHSDKSLVSFSELETILSLL----NQQTNADKQSN 400
+LDAH + L S L T+ LL + Q A +QSN
Sbjct: 80 SLDAHIESGLHSGVHLNTVTQLLENMESTQLRALRQSN 117