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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951156
Clone id TST38A01NGRL0010_K09
Library
Length 627
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_K09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID -
Sequence 
CCAAAGTTGGGATTTGAGCATCGACTTGCTGTTTCCCGGAGGATCATTGAGAAGCTGGAA
ACTAGACAAGAAATCTCTTCAGCTACGAATGCTGGGTCCACATCAGCTAAATAATGCTTT
AACAGCCATCTGCACAATCTTGTGCATTCGTGATCAAGGTTGGAGAATAAAGGAAGATGC
CATTTGGTCTGGCTTAGAGCGAACTTTCACCTTGGGGAGGTTTCAGGTTATGCCCAAGGC
AGAGTCTATCAGATTGGGCTGTGATCTCTCAACCTTAGTTCTGGATGGAGCGCATACTGC
AAGCTCTGCGAAAGCCTTGGCAAGCACTCTGATGATTGCTTTTCCATACGATTCTGTAGC
ATTGGTTATTGCAATTTTTTCTGATCCCCCCCACCATGGATTTTGCCAGGAGTTACAGCA
AGGGGGGGCACCAAAGGTGGTAGTGGTGACAGAATCAATGGTTGCTGGAGGCAAGTATCG
GTCGACTGCAGCTTCTGTTTTGGTAGATTGTTGGTGTCAAGCAGCCAGGACAAAAAAACT
GGAGGTTTTGCATGCCCTTACAAAAGATGATGTCAAAGGGTCGAAGCCAGATTCTGTTAT
AACTATCACTGACTCAGAATCAATCGT
■■Homology search results ■■ -
sp_hit_id Q0ICW2
Definition sp|Q0ICW2|PANCY_SYNS3 Bifunctional pantoate ligase/cytidylate kinase OS=Synechococcus sp. (strain CC9311)
Align length 44
Score (bit) 34.7
E-value 0.41
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951156|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_K09, 5'
         (627 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0ICW2|PANCY_SYNS3 Bifunctional pantoate ligase/cytidylate ki...    35   0.41 
sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens...    31   6.0  

>sp|Q0ICW2|PANCY_SYNS3 Bifunctional pantoate ligase/cytidylate
           kinase OS=Synechococcus sp. (strain CC9311) GN=panC/cmk
           PE=3 SV=1
          Length = 494

 Score = 34.7 bits (78), Expect = 0.41
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +2

Query: 29  LFPGGSLRSWKLD-KKSLQLRMLG---PHQLNNALTAICTILCI 148
           ++PGGS  SW++   KSLQ R+ G   P   +  +T +C +L +
Sbjct: 78  IYPGGSAESWRIQAPKSLQSRLCGSTRPGHFDGVVTVVCRLLAL 121


>sp|P02462|CO4A1_HUMAN Collagen alpha-1(IV) chain OS=Homo sapiens
            GN=COL4A1 PE=1 SV=3
          Length = 1669

 Score = 30.8 bits (68), Expect = 6.0
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 468  PATIDSVTTTTFGAPPCCNSWQNPWWGGSEKIAITNATESYGKAI 334
            PA + +V + T   PPC + W + W G S  +  +   E  G+A+
Sbjct: 1554 PAMVMAVHSQTIQIPPCPSGWSSLWIGYSFVMHTSAGAEGSGQAL 1598
tr_hit_id A7QTU7
Definition tr|A7QTU7|A7QTU7_VITVI Chromosome undetermined scaffold_171, whole genome shotgun sequence OS=Vitis vinifera
Align length 159
Score (bit) 130.0
E-value 5.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951156|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_K09, 5'
         (627 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QTU7|A7QTU7_VITVI Chromosome undetermined scaffold_171, who...   130   5e-29
tr|A9S2G8|A9S2G8_PHYPA Predicted protein (Fragment) OS=Physcomit...   110   7e-23
tr|Q2QLY6|Q2QLY6_ORYSJ Dihydrofolate synthetase/folylpolyglutama...   110   9e-23
tr|B8BN40|B8BN40_ORYSI Putative uncharacterized protein OS=Oryza...   110   9e-23
tr|Q9FN53|Q9FN53_ARATH Folylpolyglutamate synthase-like protein ...   109   1e-22
tr|Q7Y203|Q7Y203_ARATH Putative folylpolyglutamate synthase (Fra...   109   1e-22
tr|A5AYR4|A5AYR4_VITVI Putative uncharacterized protein OS=Vitis...   109   2e-22
tr|Q8W041|Q8W041_ARATH Dihydrofolate synthetase OS=Arabidopsis t...   106   1e-21
tr|B6U2J2|B6U2J2_MAIZE GLA1 OS=Zea mays PE=2 SV=1                     106   1e-21
tr|Q00X21|Q00X21_OSTTA Dihydrofolate synthetase /folylpolyglutam...    58   5e-07
tr|Q0ILT4|Q0ILT4_ORYSJ Os12g0623700 protein OS=Oryza sativa subs...    57   1e-06
tr|A4S6I4|A4S6I4_OSTLU Predicted protein OS=Ostreococcus lucimar...    50   1e-04
tr|B1HVC8|B1HVC8_LYSSC Folylpolyglutamate synthase OS=Lysinibaci...    49   3e-04
tr|A8SAD8|A8SAD8_9FIRM Putative uncharacterized protein OS=Faeca...    47   0.001
tr|A0YKU1|A0YKU1_9CYAN Folylpolyglutamate synthetase OS=Lyngbya ...    46   0.002
tr|Q8XJ43|Q8XJ43_CLOPE Folyl-polyglutamate synthetase OS=Clostri...    46   0.002
tr|Q0TP42|Q0TP42_CLOP1 FolC bifunctional protein OS=Clostridium ...    46   0.002
tr|B1RHM7|B1RHM7_CLOPE FolC bifunctional protein OS=Clostridium ...    46   0.002
tr|B1R2Y9|B1R2Y9_CLOPE FolC bifunctional protein OS=Clostridium ...    46   0.002
tr|Q97GG9|Q97GG9_CLOAB Folylpolyglutamate synthase OS=Clostridiu...    45   0.004
tr|B1RL59|B1RL59_CLOPE FolC bifunctional protein OS=Clostridium ...    45   0.005
tr|B1BQ08|B1BQ08_CLOPE FolC bifunctional protein OS=Clostridium ...    45   0.005
tr|B1BIU5|B1BIU5_CLOPE FolC bifunctional protein OS=Clostridium ...    45   0.005
tr|A3IN17|A3IN17_9CHRO Folylpolyglutamate synthase OS=Cyanothece...    44   0.006
tr|A3IEY2|A3IEY2_9BACI Folyl-polyglutamate synthetase OS=Bacillu...    44   0.006
tr|Q0SRR2|Q0SRR2_CLOPS FolC bifunctional protein OS=Clostridium ...    44   0.008
tr|B1WRN7|B1WRN7_CYAA5 Folylpolyglutamate synthase OS=Cyanothece...    43   0.018
tr|B0KAP1|B0KAP1_THEP3 FolC bifunctional protein OS=Thermoanaero...    43   0.018
tr|B0K4K8|B0K4K8_THEPX FolC bifunctional protein OS=Thermoanaero...    42   0.023
tr|B0JV87|B0JV87_MICAN Folylpolyglutamate synthase OS=Microcysti...    42   0.023

>tr|A7QTU7|A7QTU7_VITVI Chromosome undetermined scaffold_171, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00006492001 PE=4 SV=1
          Length = 536

 Score =  130 bits (328), Expect = 5e-29
 Identities = 65/159 (40%), Positives = 95/159 (59%)
 Frame = +2

Query: 77  LQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMPKAESIRL 256
           ++L+MLG HQL NA TA C  LC+RD+GWRI +++I +GLE  + LGR Q +   E+  L
Sbjct: 305 VKLQMLGIHQLQNAATATCVALCLRDKGWRISDESIHAGLEHAYLLGRSQFLTSTEAETL 364

Query: 257 GCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQQGGAPK 436
           G   +T++LDG               + FP   +AL++A+ SD  H  F +E   GG  +
Sbjct: 365 GLPGATIMLDGAHTKESAKALVDTIQMTFPEARLALIVAMASDKDHMAFAREFLSGGQLE 424

Query: 437 VVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLEVLH 553
            V +TE  +AG K R+T+AS+L DCW QA++   +  LH
Sbjct: 425 AVFLTEVNIAGAKSRTTSASMLRDCWIQASKELGINTLH 463


>tr|A9S2G8|A9S2G8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_12942 PE=4 SV=1
          Length = 423

 Score =  110 bits (275), Expect = 7e-23
 Identities = 64/158 (40%), Positives = 84/158 (53%)
 Frame = +2

Query: 56  WKLDKKSLQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMP 235
           WKL   +++LR+LG HQ +NA+TA+ ++L +R QGW I + AI  GLE T   GRFQV+ 
Sbjct: 266 WKLG--NVKLRVLGAHQQDNAITAVYSLLALRHQGWEIPDSAIRMGLEATTIPGRFQVVE 323

Query: 236 KAESIRLGCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQEL 415
              S  LGC  + L+LDG                 FP  S+A V+A+ SD   H F + L
Sbjct: 324 SDSSKALGCLSARLILDGAHTEDSAIALAKTLREGFPDASLAFVVAMASDKDEHSFARIL 383

Query: 416 QQGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAAR 529
                P VVV T   VAG   R   A  L +CW Q A+
Sbjct: 384 LTKAKPDVVVTTRVPVAGSYNRCRTAQELAECWSQTAQ 421


>tr|Q2QLY6|Q2QLY6_ORYSJ Dihydrofolate synthetase/folylpolyglutamate
           synthetase, putative, expressed OS=Oryza sativa subsp.
           japonica GN=LOC_Os12g42870 PE=4 SV=2
          Length = 510

 Score =  110 bits (274), Expect = 9e-23
 Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMPKA 241
           ++ + L+L++LG HQ  NA+TA CT LC+R+ GW I + +I +GLE+T   GR Q + K 
Sbjct: 268 IELQDLKLQLLGDHQRQNAVTACCTALCLRELGWNISDTSIQAGLEKTQLPGRSQFLTKE 327

Query: 242 ESIRLGCD-LSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
           E+  LG D  S++++DG                  P   +ALV+ + +D  H  F ++L 
Sbjct: 328 ETSVLGLDGTSSVLVDGAHTEASAKALSDVIKTVQPRGPLALVVGMANDKEHLAFAEQLL 387

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTK 535
            G  P VV++TE+ +AGG+ RS  AS L + W  AA+++
Sbjct: 388 SGPRPDVVLLTEASIAGGRSRSMPASSLKEIWMAAAQSQ 426


>tr|B8BN40|B8BN40_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_39178 PE=4 SV=1
          Length = 510

 Score =  110 bits (274), Expect = 9e-23
 Identities = 59/159 (37%), Positives = 93/159 (58%), Gaps = 1/159 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMPKA 241
           ++ + L+L++LG HQ  NA+TA CT LC+R+ GW I + +I +GLE+T   GR Q + K 
Sbjct: 268 IELQDLKLQLLGDHQRQNAVTACCTALCLRELGWNISDTSIQAGLEKTQLPGRSQFLTKE 327

Query: 242 ESIRLGCD-LSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
           E+  LG D  S++++DG                  P   +ALV+ + +D  H  F ++L 
Sbjct: 328 ETSVLGLDGTSSVLVDGAHTEASAKALSDVIKTVQPRGPLALVVGMANDKEHLAFAEQLL 387

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTK 535
            G  P VV++TE+ +AGG+ RS  AS L + W  AA+++
Sbjct: 388 SGPRPDVVLLTEASIAGGRSRSMPASSLKEIWMAAAQSQ 426


>tr|Q9FN53|Q9FN53_ARATH Folylpolyglutamate synthase-like protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 480

 Score =  109 bits (273), Expect = 1e-22
 Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGW-RIKEDAIWSGLERTFTLGRFQVMPK 238
           ++   + LRMLG HQL NA+TA C  LC+RDQG  R+ ++AI  GLE T  LGR Q +  
Sbjct: 268 VELSDVNLRMLGHHQLQNAVTATCVSLCLRDQGCGRVTDEAIRIGLENTRLLGRSQFLTP 327

Query: 239 AESIRLGCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
            E+  L    +T++LDG                 FP   +  V+A+ SD  H  F +EL 
Sbjct: 328 KEAETLLLPGATVLLDGAHTKESARALKEMIKKDFPEKRLVFVVAMASDKDHVSFAKELL 387

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLEVLHALTKDDVKGS 583
            G  P+ V++TE+ + GGK RST +SVL + W +AA       + A     V GS
Sbjct: 388 SGLKPEAVILTEADIGGGKIRSTESSVLKESWIKAADELGSRSMEASENKTVLGS 442


>tr|Q7Y203|Q7Y203_ARATH Putative folylpolyglutamate synthase
           (Fragment) OS=Arabidopsis thaliana GN=At5g41480 PE=2
           SV=1
          Length = 318

 Score =  109 bits (273), Expect = 1e-22
 Identities = 67/175 (38%), Positives = 93/175 (53%), Gaps = 1/175 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGW-RIKEDAIWSGLERTFTLGRFQVMPK 238
           ++   + LRMLG HQL NA+TA C  LC+RDQG  R+ ++AI  GLE T  LGR Q +  
Sbjct: 106 VELSDVNLRMLGHHQLQNAVTATCVSLCLRDQGCGRVTDEAIRIGLENTRLLGRSQFLTP 165

Query: 239 AESIRLGCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
            E+  L    +T++LDG                 FP   +  V+A+ SD  H  F +EL 
Sbjct: 166 KEAETLLLPGATVLLDGAHTKESARALKEMIKKDFPEKRLVFVVAMASDKDHVSFAKELL 225

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLEVLHALTKDDVKGS 583
            G  P+ V++TE+ + GGK RST +SVL + W +AA       + A     V GS
Sbjct: 226 SGLKPEAVILTEADIGGGKIRSTESSVLKESWIKAADELGSRSMEASENKTVLGS 280


>tr|A5AYR4|A5AYR4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018995 PE=4 SV=1
          Length = 637

 Score =  109 bits (272), Expect = 2e-22
 Identities = 59/159 (37%), Positives = 88/159 (55%)
 Frame = +2

Query: 77  LQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMPKAESIRL 256
           ++L+MLG HQL NA TA C  LC+RD+GWRI +++I +GLE  + LGR Q +   E+  L
Sbjct: 305 VKLQMLGIHQLQNAATATCVALCLRDKGWRISDESIHAGLEHAYLLGRSQFLTSTEAETL 364

Query: 257 GCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQQGGAPK 436
           G   +T++LDG               + FP   +AL++A+ S              G  +
Sbjct: 365 GLPGATIMLDGAHTKESAKALVDTIQMTFPEARLALIVAMAS--------------GQLE 410

Query: 437 VVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLEVLH 553
            V +TE  +AG   R+T+AS+L DCW QA++   +  LH
Sbjct: 411 AVFLTEVNIAGANSRTTSASMLRDCWIQASKELGINTLH 449


>tr|Q8W041|Q8W041_ARATH Dihydrofolate synthetase OS=Arabidopsis
           thaliana GN=dhfs/fpgs1 PE=2 SV=1
          Length = 530

 Score =  106 bits (265), Expect = 1e-21
 Identities = 65/175 (37%), Positives = 92/175 (52%), Gaps = 1/175 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGW-RIKEDAIWSGLERTFTLGRFQVMPK 238
           ++   + LRMLG HQL NA+TA C  LC+RDQG  R+ ++AI  GLE T  LGR Q +  
Sbjct: 318 VELSDVNLRMLGHHQLQNAVTATCVSLCLRDQGCGRVTDEAIRIGLENTRLLGRSQFLTP 377

Query: 239 AESIRLGCDLSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
            ++  L    +T++LDG                 FP   +  V+A+ SD  H  F +EL 
Sbjct: 378 KKAETLLLPGATVLLDGAHTKESARALKEMIKKDFPEKRLVFVVAMASDKDHVSFAKELL 437

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLEVLHALTKDDVKGS 583
            G  P+ V++TE+ + GGK RST +S L + W +AA       + A     V GS
Sbjct: 438 SGLKPEAVILTEADIGGGKIRSTESSALKESWIKAADELGSRSMEASENKTVLGS 492


>tr|B6U2J2|B6U2J2_MAIZE GLA1 OS=Zea mays PE=2 SV=1
          Length = 559

 Score =  106 bits (264), Expect = 1e-21
 Identities = 60/162 (37%), Positives = 87/162 (53%), Gaps = 1/162 (0%)
 Frame = +2

Query: 62  LDKKSLQLRMLGPHQLNNALTAICTILCIRDQGWRIKEDAIWSGLERTFTLGRFQVMPKA 241
           ++   + L++LG HQ  NA+TA C  LC+  QGW I + +I +GLE T   GR Q +   
Sbjct: 314 IEMHDINLQLLGDHQRQNAVTAACAALCLCSQGWDISDASIQAGLEETQLPGRSQFLTAE 373

Query: 242 ESIRLGCD-LSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQ 418
           E+  LG D  ST+++DG                  P   +ALV+ + SD  H  F ++L 
Sbjct: 374 EASALGFDSASTVLIDGAHTEESAKALSGVIKTVRPEGPLALVVGMASDKEHLAFAEQLL 433

Query: 419 QGGAPKVVVVTESMVAGGKYRSTAASVLVDCWCQAARTKKLE 544
            G  P VV++TE+ VAGG  R+  AS L + W  AAR + +E
Sbjct: 434 SGQTPDVVLLTEASVAGGTSRAMPASSLKEVWIAAARDRGIE 475


>tr|Q00X21|Q00X21_OSTTA Dihydrofolate synthetase /folylpolyglutamate
           synthetase (ISS) OS=Ostreococcus tauri GN=Ot13g01620
           PE=4 SV=1
          Length = 483

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 53/189 (28%), Positives = 78/189 (41%), Gaps = 13/189 (6%)
 Frame = +2

Query: 89  MLGPHQLNNALTAICTILCIRDQGW-RIKEDAIWSGLERTFTLGRFQVMPKAESIRLGCD 265
           ++GPHQ  N   A+  +  +R QG   +  + I +GLE T + G F++           D
Sbjct: 295 LVGPHQRENVDLAVRVLWWLRGQGKIDVSLEDIRTGLESTRSPGNFEMFD--------VD 346

Query: 266 LSTLVLDGXXXXXXXXXXXXXXMIAFPYDSVALVIAIFSDPPHHGFCQELQQGGAPKVVV 445
             +++ DG                 FP   V  V+ +  D  H GF +EL +   P  V+
Sbjct: 347 GMSVIADGAHTKASAEMLVKTLGEIFPRRKVVFVVGMADDKDHKGFLEELYKSN-PLAVI 405

Query: 446 VTESMVAGGKYRSTAASVLVDCW------------CQAARTKKLEVLHALTKDDVKGSKP 589
            T+  VAGG  R+T A  L                  A   + LEV  A  KDD     P
Sbjct: 406 CTQMQVAGGSSRTTPAKDLATALQGGHQNYDPPPEIVAEFDEALEVALAGAKDD-----P 460

Query: 590 DSVITITDS 616
           D+V+ +T S
Sbjct: 461 DAVVVVTGS 469