| DK951172 |
| Clone id |
TST38A01NGRL0010_L01 |
| Library |
TST38 |
| Length |
648 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_L01. 5' end sequence. |
| Accession |
DK951172 |
| Tissue type |
prothallia |
| Developmental stage |
gametophyte |
| Contig ID |
- |
| Sequence |
GCGTTCTTTGTCATAAACCTCTGTGTGGCAATGGAAAGTGTGAGCTACCAGCGCTTACCT
ACAGTACGGATACGGGAGATGAAGGATGATTTTATCAAATTTGAGCTGCGAAACACAGAC
GCTAGCATGGCCAATGCTCTGCGCCGTGTGGTGTTGGCAGAAGTGCCCACCATAGCCATT
GACCTGGTAGAGATCGAGATGAACTCCTCGGTTCTCAATGACGAGTTTATAGCTCACCGG
CTCGGTCTCATTCCCCTTACAAGTGCGCGCGCTATGGACATGAAGTTTTCTCGTGACTGT
GATGCTTGCGATGGTGATGGCAAATGCGAATTTTGCTCTGTGGAGTTCACACTCAATGTA
AAATGCACATCCGATCAGACACTTGATGTAACAAGCCATGACCTTGTTGCTTCCGATCAG
CAATATCCTGTATATCCAGTTGGTTTTCTTGAGCATACTGACTACAGCAGTTTTGAAGAG
GATCCAGAGCCACCAGAGCGAAGAGGGATTCTCATTGTGAAGCTGAGGCGTGGCCAGGAA
TTGAAGTTGCGTGCCATCGCGAGGAAGGGCATAGGGAAGGACCATGCGAAATGGTCGCCG
GCTGCCACAATCACATTTCAGTATGAACCTGAAATACACATCAATGAG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q39211 |
| Definition |
sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A OS=Arabidopsis thaliana |
| Align length |
206 |
| Score (bit) |
293.0 |
| E-value |
7.0e-79 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951172|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L01, 5'
(648 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB... 293 7e-79
sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB... 271 2e-72
sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3... 193 6e-49
sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3... 191 3e-48
sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3... 191 3e-48
sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3... 186 1e-46
sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3... 166 7e-41
sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3... 162 1e-39
sp|P16925|CNJC_TETTH Conjugation stage-specific protein OS=Tetra... 134 4e-31
sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III sub... 112 1e-24
sp|Q32L22|RPAC1_BOVIN DNA-directed RNA polymerases I and III sub... 112 1e-24
sp|O15160|RPAC1_HUMAN DNA-directed RNA polymerases I and III sub... 111 4e-24
sp|P52432|RPAC1_MOUSE DNA-directed RNA polymerases I and III sub... 110 6e-24
sp|Q2NFZ6|RPOD_METST DNA-directed RNA polymerase subunit D OS=Me... 108 2e-23
sp|O28002|RPOD_ARCFU DNA-directed RNA polymerase subunit D OS=Ar... 106 9e-23
sp|P07703|RPAC1_YEAST DNA-directed RNA polymerases I and III sub... 105 2e-22
sp|Q54SN4|RPAC1_DICDI DNA-directed RNA polymerases I and III sub... 102 2e-21
sp|Q5JJF4|RPOD_PYRKO DNA-directed RNA polymerase subunit D OS=Py... 101 3e-21
sp|Q8U0E4|RPOD_PYRFU DNA-directed RNA polymerase subunit D OS=Py... 100 7e-21
sp|Q8ZYQ3|RPOD_PYRAE DNA-directed RNA polymerase subunit D OS=Py... 98 3e-20
sp|A3MXZ5|RPOD_PYRCJ DNA-directed RNA polymerase subunit D OS=Py... 98 4e-20
sp|A4WNA4|RPOD_PYRAR DNA-directed RNA polymerase subunit D OS=Py... 98 4e-20
sp|O26144|RPOD_METTH DNA-directed RNA polymerase subunit D OS=Me... 98 4e-20
sp|Q8PV16|RPOD_METMA DNA-directed RNA polymerase subunit D OS=Me... 98 4e-20
sp|Q9V198|RPOD_PYRAB DNA-directed RNA polymerase subunit D OS=Py... 97 7e-20
sp|A5UN55|RPOD_METS3 DNA-directed RNA polymerase subunit D OS=Me... 94 6e-19
sp|O59303|RPOD_PYRHO DNA-directed RNA polymerase subunit D OS=Py... 93 1e-18
sp|Q9YB53|RPOD_AERPE DNA-directed RNA polymerase subunit D OS=Ae... 93 1e-18
sp|A1RSE3|RPOD_PYRIL DNA-directed RNA polymerase subunit D OS=Py... 93 1e-18
sp|Q6KZP5|RPOD_PICTO DNA-directed RNA polymerase subunit D OS=Pi... 91 4e-18
>sp|Q39211|RPB3A_ARATH DNA-directed RNA polymerase II subunit RPB3-A
OS=Arabidopsis thaliana GN=RPB36A PE=2 SV=1
Length = 319
Score = 293 bits (749), Expect = 7e-79
Identities = 147/206 (71%), Positives = 170/206 (82%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
M+ +YQR P ++IRE+KDD+ KFELR TD SMANALRRV+++EVPT+AIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIAHRLGLIPLTS RAM M+FSRDCDACDGDG+CEFCSVEF L+ KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
TS DL ++D V PV F + S + E +GI+IVKLRRGQELKLRAIARKG
Sbjct: 121 TSRDLYSADP--TVTPVDFTIDSSVS------DSSEHKGIIIVKLRRGQELKLRAIARKG 172
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+TF YEP+I INE
Sbjct: 173 IGKDHAKWSPAATVTFMYEPDIIINE 198
>sp|Q39212|RPB3B_ARATH DNA-directed RNA polymerase II subunit RPB3-B
OS=Arabidopsis thaliana GN=RPB36B PE=1 SV=2
Length = 319
Score = 271 bits (694), Expect = 2e-72
Identities = 136/206 (66%), Positives = 165/206 (80%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
M+ V+YQR PTV+IRE+KDD+ KFELR TD SMANALRRV+++EVPT+AI LV+IE+NSS
Sbjct: 1 MDGVTYQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIA RL LIPLTS RAM M+F +DC+ C+GD CEFCSVEF L+ KC +DQTLDV
Sbjct: 61 VLNDEFIAQRLSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
TS DL ++D V PV D++S + E +GI+I KLRRGQELKL+A+ARKG
Sbjct: 121 TSRDLYSADP--TVTPV------DFTSNSSTSDSSEHKGIIIAKLRRGQELKLKALARKG 172
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+T+ YEP+I INE
Sbjct: 173 IGKDHAKWSPAATVTYMYEPDIIINE 198
>sp|Q3T0Q3|RPB3_BOVIN DNA-directed RNA polymerase II subunit RPB3
OS=Bos taurus GN=POLR2C PE=2 SV=1
Length = 275
Score = 193 bits (491), Expect = 6e-49
Identities = 104/197 (52%), Positives = 140/197 (71%), Gaps = 1/197 (0%)
Frame = +1
Query: 46 YQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDE 225
Y PTVRI E+ D+ +KF + NTD ++AN++RRV +AEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 226 FIAHRLGLIPLTSARAMD-MKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHD 402
FIAHRLGLIPLTS +D +++SRDC + C CSVEFTL+V+C DQT VTS D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 403 LVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKD 582
L+++ + V PV T + + + E+ ILIVKLR+GQEL+LRA A+KG GK+
Sbjct: 120 LISNSPR--VIPV-----TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKE 172
Query: 583 HAKWSPAATITFQYEPE 633
HAKW+P A + F+Y+P+
Sbjct: 173 HAKWNPTAGVAFEYDPD 189
>sp|P19387|RPB3_HUMAN DNA-directed RNA polymerase II subunit RPB3
OS=Homo sapiens GN=POLR2C PE=1 SV=2
Length = 275
Score = 191 bits (485), Expect = 3e-48
Identities = 103/197 (52%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Frame = +1
Query: 46 YQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDE 225
Y PTVRI E+ D+ +KF + NTD ++AN++RRV +AEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTDENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDANSSVLHDE 62
Query: 226 FIAHRLGLIPLTSARAMD-MKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHD 402
FIAHRLGLIPL S +D +++SRDC + C CSVEFTL+V+C DQT VTS D
Sbjct: 63 FIAHRLGLIPLISDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 403 LVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKD 582
L+++ + V PV T + + + E+ ILIVKLR+GQEL+LRA A+KG GK+
Sbjct: 120 LISNSPR--VIPV-----TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYAKKGFGKE 172
Query: 583 HAKWSPAATITFQYEPE 633
HAKW+P A + F+Y+P+
Sbjct: 173 HAKWNPTAGVAFEYDPD 189
>sp|Q54DH7|RPB3_DICDI DNA-directed RNA polymerase II subunit rpb3
OS=Dictyostelium discoideum GN=polr2c PE=3 SV=1
Length = 302
Score = 191 bits (485), Expect = 3e-48
Identities = 108/199 (54%), Positives = 137/199 (68%)
Frame = +1
Query: 52 RLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDEFI 231
R P + I E+K+D I F L NTD S+ANALRRV++AEVPT+ IDLVE E N+SVL DEFI
Sbjct: 10 RQPELEILEIKNDSIIFILSNTDISVANALRRVMIAEVPTMCIDLVEFESNNSVLCDEFI 69
Query: 232 AHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHDLVA 411
AHRLGLIPL S ++RDC D +C+ CSVE LNVKCT ++ DVTS DL++
Sbjct: 70 AHRLGLIPLVSDNIDKFCYTRDCSCSD---RCDQCSVELRLNVKCTENRPRDVTSSDLLS 126
Query: 412 SDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKDHAK 591
Q V PV + T +S +E P IVKLRRGQE+KLRAIA+KG+GK+HAK
Sbjct: 127 --QNSAVIPVS-SQVTSSNSEQEIP---------IVKLRRGQEIKLRAIAKKGVGKEHAK 174
Query: 592 WSPAATITFQYEPEIHINE 648
WSP+ T+Q++P I +N+
Sbjct: 175 WSPSCVATYQFQPIIVLNQ 193
>sp|P97760|RPB3_MOUSE DNA-directed RNA polymerase II subunit RPB3
OS=Mus musculus GN=Polr2c PE=2 SV=1
Length = 275
Score = 186 bits (471), Expect = 1e-46
Identities = 101/197 (51%), Positives = 138/197 (70%), Gaps = 1/197 (0%)
Frame = +1
Query: 46 YQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDE 225
Y PTVRI E+ ++ +KF + NTD ++AN++RRV +AEVP IAID V+I+ NSSVL+DE
Sbjct: 3 YANQPTVRITELTEENVKFIIENTDLAVANSIRRVFIAEVPIIAIDWVQIDGNSSVLHDE 62
Query: 226 FIAHRLGLIPLTSARAMD-MKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHD 402
FIAHRLGLIPLTS +D +++SRDC + C CSVEFTL+V+C DQT VTS D
Sbjct: 63 FIAHRLGLIPLTSDDIVDKLQYSRDCTC---EEFCPECSVEFTLDVRCNEDQTRHVTSRD 119
Query: 403 LVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKD 582
L+++ + V PV T + + + E+ ILIVKLR+GQEL+LRA +K GK+
Sbjct: 120 LISNSPR--VIPV-----TSRNRDNDPNDYVEQDDILIVKLRKGQELRLRAYVKKRSGKE 172
Query: 583 HAKWSPAATITFQYEPE 633
HAKW+P A + F+Y+P+
Sbjct: 173 HAKWNPTAGVAFEYDPD 189
>sp|P37382|RPB3_SCHPO DNA-directed RNA polymerase II subunit RPB3
OS=Schizosaccharomyces pombe GN=rpb3 PE=1 SV=2
Length = 297
Score = 166 bits (421), Expect = 7e-41
Identities = 87/194 (44%), Positives = 124/194 (63%), Gaps = 5/194 (2%)
Frame = +1
Query: 64 VRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDEFIAHRL 243
+ IR + + + F L NT ++AN+LRRVVLAE+PT+AIDLVEI +N+SV+ DEF+AHRL
Sbjct: 7 ITIRNISKNSVDFVLTNTSLAVANSLRRVVLAEIPTVAIDLVEINVNTSVMPDEFLAHRL 66
Query: 244 GLIPLTSAR-----AMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHDLV 408
G+IPL S+ + ++++R+CD D C CSVE LN KCT + T+++ + DLV
Sbjct: 67 GMIPLDSSNIDEPPPVGLEYTRNCDC---DQYCPKCSVELFLNAKCTGEGTMEIYARDLV 123
Query: 409 ASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKDHA 588
S +P+ P+ RG LI KLR+ QE+ LR IA+KGI K+HA
Sbjct: 124 VSSNSSLGHPI--------------LADPKSRGPLICKLRKEQEISLRCIAKKGIAKEHA 169
Query: 589 KWSPAATITFQYEP 630
KWSP + + F+Y+P
Sbjct: 170 KWSPTSAVAFEYDP 183
>sp|P16370|RPB3_YEAST DNA-directed RNA polymerase II subunit RPB3
OS=Saccharomyces cerevisiae GN=RPB3 PE=1 SV=2
Length = 318
Score = 162 bits (410), Expect = 1e-39
Identities = 92/197 (46%), Positives = 120/197 (60%), Gaps = 6/197 (3%)
Frame = +1
Query: 58 PTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDEFIAH 237
P V+IRE D + F L N D +MAN+LRRV++AE+PT+AID VE+E N++VL DEFIAH
Sbjct: 6 PQVKIREASKDNVDFILSNVDLAMANSLRRVMIAEIPTLAIDSVEVETNTTVLADEFIAH 65
Query: 238 RLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHDLV--- 408
RLGLIPL S +++SRDC D C+ CSV TL S+ T +V S DLV
Sbjct: 66 RLGLIPLQSMDIEQLEYSRDCFCED---HCDKCSVVLTLQAFGESESTTNVYSKDLVIVS 122
Query: 409 ---ASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGK 579
+ +P+ + E G+LI KLR+GQELKL +A+KGI K
Sbjct: 123 NLMGRNIGHPII-----------------QDKEGNGVLICKLRKGQELKLTCVAKKGIAK 165
Query: 580 DHAKWSPAATITFQYEP 630
+HAKW PAA I F+Y+P
Sbjct: 166 EHAKWGPAAAIEFEYDP 182
>sp|P16925|CNJC_TETTH Conjugation stage-specific protein
OS=Tetrahymena thermophila GN=CNJC PE=2 SV=1
Length = 310
Score = 134 bits (337), Expect = 4e-31
Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 9/204 (4%)
Frame = +1
Query: 52 RLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDEFI 231
+L + E K +F L N D S+AN+LRR++LAE+ TIAI V++ N+S L DE+I
Sbjct: 5 KLTLTNLEEFK---CEFTLENCDISLANSLRRILLAEIETIAIHNVKVYENTSSLPDEYI 61
Query: 232 AHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHDLVA 411
AHRLGLIPL SA+ D + +C+ G+C+ C++ F L V +++ L+VTS DL
Sbjct: 62 AHRLGLIPLNSAKVDDYNYIWNCNC---QGECDRCTIHFDLRVSNFTNEVLEVTSLDLKQ 118
Query: 412 SDQQYPVYPVGFLEHTD---------YSSFEEDPEPPERRGILIVKLRRGQELKLRAIAR 564
+HTD YS ++ GI I+KL +GQ++ A+
Sbjct: 119 RQ-----------DHTDEDAVRPIKVYSILRDEYGNKREVGIPIIKLSKGQQIHFECEAQ 167
Query: 565 KGIGKDHAKWSPAATITFQYEPEI 636
KGIGK H+KW+P TF EPEI
Sbjct: 168 KGIGKMHSKWNPVCISTFSVEPEI 191
>sp|O94616|RPAC1_SCHPO DNA-directed RNA polymerases I and III
subunit RPAC1 OS=Schizosaccharomyces pombe GN=rpc40 PE=2
SV=1
Length = 348
Score = 112 bits (281), Expect = 1e-24
Identities = 66/196 (33%), Positives = 108/196 (55%), Gaps = 3/196 (1%)
Frame = +1
Query: 64 VRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDEFIAHRL 243
V I + + + FE+ DAS+ANA RR+++AE+PT+A + V I N+S++ DE ++HR+
Sbjct: 48 VSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHRI 107
Query: 244 GLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHD---LVAS 414
GL+P+++ M F + ++ +V F+LN KC ++ D L +
Sbjct: 108 GLVPISADPDMFKWFQHPLPGQEAT-HTDYDTVVFSLNKKCEFNKNAATDEKDPKRLYVN 166
Query: 415 DQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKDHAKW 594
+ Y + + F ++P I++ KLR GQE+ L A A GIG+DHAK+
Sbjct: 167 SEVYSGDLIWKPQGRQEERFADNPIRVVNPDIVVAKLRPGQEIDLEAHAILGIGQDHAKF 226
Query: 595 SPAATITFQYEPEIHI 642
SP AT +++ P IHI
Sbjct: 227 SPVATASYRLLPTIHI 242
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A5B429 |
| Definition |
tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis vinifera |
| Align length |
206 |
| Score (bit) |
308.0 |
| E-value |
1.0e-82 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK951172|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L01, 5'
(648 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis... 308 1e-82
tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome ... 308 2e-82
tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella paten... 303 5e-81
tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago ... 294 4e-78
tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third lar... 290 7e-77
tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa pol... 286 1e-75
tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subs... 285 1e-75
tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza... 285 1e-75
tr|A3BW06|A3BW06_ORYSJ Putative uncharacterized protein OS=Oryza... 285 1e-75
tr|Q45NH1|Q45NH1_MEDSA DNA-directed RNA polymerase II third larg... 273 7e-72
tr|Q0WRA4|Q0WRA4_ARATH DNA-directed RNA polymerase II, third lar... 271 2e-71
tr|A8MR04|A8MR04_ARATH Uncharacterized protein At2g15400.2 OS=Ar... 271 2e-71
tr|A9SM40|A9SM40_PHYPA Predicted protein OS=Physcomitrella paten... 213 8e-54
tr|Q6IRR3|Q6IRR3_XENLA MGC81245 protein OS=Xenopus laevis GN=pol... 198 2e-49
tr|B5FZ64|B5FZ64_TAEGU Putative DNA directed RNA polymerase II p... 197 4e-49
tr|Q6P7Y7|Q6P7Y7_XENTR Polymerase (RNA) II (DNA directed) polype... 197 5e-49
tr|Q7ZV11|Q7ZV11_DANRE Polymerase (RNA) II (DNA directed) polype... 195 2e-48
tr|Q4SK90|Q4SK90_TETNG Chromosome 13 SCAF14566, whole genome sho... 194 4e-48
tr|A7SI64|A7SI64_NEMVE Predicted protein OS=Nematostella vectens... 193 9e-48
tr|Q9DB22|Q9DB22_MOUSE Putative uncharacterized protein OS=Mus m... 192 2e-47
tr|Q99M46|Q99M46_MOUSE Polymerase (RNA) II (DNA directed) polype... 192 2e-47
tr|Q5EB90|Q5EB90_RAT Polymerase (RNA) II (DNA directed) polypept... 192 2e-47
tr|B6LMF3|B6LMF3_BRAFL Putative uncharacterized protein OS=Branc... 192 2e-47
tr|Q6FGR6|Q6FGR6_HUMAN POLR2C protein OS=Homo sapiens GN=POLR2C ... 191 3e-47
tr|B7Z6D1|B7Z6D1_HUMAN cDNA FLJ57430, highly similar to DNA-dire... 191 3e-47
tr|Q4R533|Q4R533_MACFA Brain cDNA, clone: QccE-21516, similar to... 190 6e-47
tr|Q76L19|Q76L19_ANTPE Homologue of DNA-directed RNA polymerase ... 190 6e-47
tr|B5XBM8|B5XBM8_SALSA DNA-directed RNA polymerase II subunit RP... 190 7e-47
tr|Q3UUX3|Q3UUX3_MOUSE Putative uncharacterized protein OS=Mus m... 190 7e-47
tr|B5X5T8|B5X5T8_SALSA DNA-directed RNA polymerase II subunit RP... 188 2e-46
>tr|A5B429|A5B429_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_019338 PE=4 SV=1
Length = 318
Score = 308 bits (790), Expect = 1e-82
Identities = 153/206 (74%), Positives = 176/206 (85%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
ME VSYQR P ++IRE+KDD+ KFELR TDASMANALRRV++AEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIAHRLGLIPLTS RAM M+FSRDCDACDGDG+CEFCSVEF L KC +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMSMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
TS DL++SD + V PV F + + Y S +++GI+IVKLRRGQEL+LRAIARKG
Sbjct: 121 TSKDLISSD--HTVVPVDFSDSSGYDS-------ADKKGIIIVKLRRGQELRLRAIARKG 171
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+TF YEPEIHINE
Sbjct: 172 IGKDHAKWSPAATVTFMYEPEIHINE 197
>tr|A7P9N6|A7P9N6_VITVI Chromosome chr3 scaffold_8, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00036639001
PE=4 SV=1
Length = 318
Score = 308 bits (788), Expect = 2e-82
Identities = 153/206 (74%), Positives = 176/206 (85%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
ME VSYQR P ++IRE+KDD+ KFELR TDASMANALRRV++AEVPT+AIDLVEIE+NSS
Sbjct: 1 MEGVSYQRFPKIKIREVKDDYAKFELRETDASMANALRRVMIAEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIAHRLGLIPLTS RAM M+FSRDCDACDGDG+CEFCSVEF L KC +D+TLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEFCSVEFHLRAKCMTDETLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
TS DL++SD + V PV F + + Y S +++GI+IVKLRRGQEL+LRAIARKG
Sbjct: 121 TSKDLISSD--HTVVPVDFSDSSGYDS-------ADKKGIIIVKLRRGQELRLRAIARKG 171
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+TF YEPEIHINE
Sbjct: 172 IGKDHAKWSPAATVTFMYEPEIHINE 197
>tr|A9SHD1|A9SHD1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_129844 PE=4 SV=1
Length = 324
Score = 303 bits (777), Expect = 5e-81
Identities = 153/207 (73%), Positives = 177/207 (85%), Gaps = 1/207 (0%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
M++VSYQR PTVRIR++KDD +KFELR+TDAS+ANALRR+++AEVPT+AIDLVEIE NSS
Sbjct: 1 MDNVSYQRFPTVRIRDIKDDVLKFELRDTDASIANALRRIMIAEVPTLAIDLVEIESNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEF+AHRLGLIP+ S RAM+M+ SRDCDACDGDG+CE+CS+EF L+VKCT DQTLDV
Sbjct: 61 VLNDEFLAHRLGLIPIVSDRAMEMRLSRDCDACDGDGRCEYCSIEFHLSVKCTGDQTLDV 120
Query: 391 TSHDLVASDQQ-YPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARK 567
TS DLV+SD PV G D FE + + RGILIVKLR+GQELKLRAIARK
Sbjct: 121 TSLDLVSSDPSIIPVDAAG--RAADMGGFESN----DTRGILIVKLRKGQELKLRAIARK 174
Query: 568 GIGKDHAKWSPAATITFQYEPEIHINE 648
GIGKDHAKWSPAAT+TFQYEPEIHINE
Sbjct: 175 GIGKDHAKWSPAATVTFQYEPEIHINE 201
>tr|Q2MGQ5|Q2MGQ5_MEDTR RNA polymerase, dimerisation OS=Medicago
truncatula GN=MtrDRAFT_AC147481g15v2 PE=4 SV=1
Length = 318
Score = 294 bits (752), Expect = 4e-78
Identities = 150/206 (72%), Positives = 175/206 (84%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
ME SY R+P V+IRE+KDD++KFELR+TDAS+ANALRRV+++EVPT+AIDLVEIE+NSS
Sbjct: 1 MEGASYARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIAHRLGLIPLTS RAM M+FSRDCDACDGDG+CE+CSVEF L VKC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
+S DL++SD + V PV +S E D RGI+IVKLRRGQEL+LRAIARKG
Sbjct: 121 SSKDLISSD--HTVTPVDV--PGGDASIESD-----GRGIIIVKLRRGQELRLRAIARKG 171
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+TF YEP+IHINE
Sbjct: 172 IGKDHAKWSPAATVTFMYEPDIHINE 197
>tr|Q8LAJ1|Q8LAJ1_ARATH DNA-directed RNA polymerase II, third
largest subunit OS=Arabidopsis thaliana PE=2 SV=1
Length = 319
Score = 290 bits (741), Expect = 7e-77
Identities = 146/206 (70%), Positives = 169/206 (82%)
Frame = +1
Query: 31 MESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSS 210
M+ +YQR P ++IRE+KDD+ KFELR TD SMANALRRV+++EVPT+AIDLVEIE+NSS
Sbjct: 1 MDGATYQRFPKIKIRELKDDYAKFELRETDVSMANALRRVMISEVPTVAIDLVEIEVNSS 60
Query: 211 VLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDV 390
VLNDEFIAHRLGLI LTS RAM M+FSRDCDACDGDG+CEFCSVEF L+ KC +DQTLDV
Sbjct: 61 VLNDEFIAHRLGLISLTSERAMSMRFSRDCDACDGDGQCEFCSVEFRLSSKCVTDQTLDV 120
Query: 391 TSHDLVASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKG 570
TS DL ++D V PV F + S + E +GI+IVKLRRGQELKLRAIARKG
Sbjct: 121 TSRDLYSADP--TVTPVDFTIDSSVS------DSSEHKGIIIVKLRRGQELKLRAIARKG 172
Query: 571 IGKDHAKWSPAATITFQYEPEIHINE 648
IGKDHAKWSPAAT+TF YEP+I INE
Sbjct: 173 IGKDHAKWSPAATVTFMYEPDIIINE 198
>tr|B6TCC3|B6TCC3_MAIZE DNA-directed RNA polymerase II 36 kDa
polypeptide A OS=Zea mays PE=2 SV=1
Length = 328
Score = 286 bits (731), Expect = 1e-75
Identities = 151/207 (72%), Positives = 170/207 (82%), Gaps = 5/207 (2%)
Frame = +1
Query: 43 SYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLND 222
SYQR P VRIRE+KDD+ KFELR+TDASMANALRRV++AEVPT+AIDLVEIE+NSSVLND
Sbjct: 8 SYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNSSVLND 67
Query: 223 EFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCT-SDQTLDVTSH 399
EFIAHRLGLIPLTSA AM M+FSRDCDACDGDG CE+CSVEF L+V T SDQTL+VTS+
Sbjct: 68 EFIAHRLGLIPLTSAAAMQMRFSRDCDACDGDGSCEYCSVEFHLSVHATDSDQTLEVTSN 127
Query: 400 DLVASDQQYPVYPVGFLEHTDYSSFEEDP----EPPERRGILIVKLRRGQELKLRAIARK 567
DL + D + V PV ++ DP E RGILIVKLRRGQEL+LRAIARK
Sbjct: 128 DLRSMDPK--VCPVDQARAYQHALGGTDPFGANASNENRGILIVKLRRGQELRLRAIARK 185
Query: 568 GIGKDHAKWSPAATITFQYEPEIHINE 648
GIGKDHAKWSPAAT+TF YEP+I INE
Sbjct: 186 GIGKDHAKWSPAATVTFMYEPDIRINE 212
>tr|Q6YX88|Q6YX88_ORYSJ Os09g0110400 protein OS=Oryza sativa subsp.
japonica GN=P0646B04.12 PE=2 SV=1
Length = 330
Score = 285 bits (730), Expect = 1e-75
Identities = 151/212 (71%), Positives = 173/212 (81%), Gaps = 5/212 (2%)
Frame = +1
Query: 28 AMESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNS 207
A VSYQR P VRIRE+KDD+ KFELR+TDASMANALRRV++AEVPT+AIDLVEIE+NS
Sbjct: 4 AAGGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNS 63
Query: 208 SVLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCT-SDQTL 384
SVLNDEFIAHRLGLIPLTSA AM M+FSRDCDACDGDG CE+CSVEF L + T SDQTL
Sbjct: 64 SVLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTL 123
Query: 385 DVTSHDLVASDQQYPVYPVGFLEHTDYSSFEEDP----EPPERRGILIVKLRRGQELKLR 552
+VTS+DL ++D + V PV ++ +P ++RGILIVKLRRGQEL+LR
Sbjct: 124 EVTSNDLRSTDPK--VCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLR 181
Query: 553 AIARKGIGKDHAKWSPAATITFQYEPEIHINE 648
AIARKGIGKDHAKWSPAAT+TF YEPEI INE
Sbjct: 182 AIARKGIGKDHAKWSPAATVTFMYEPEIRINE 213
>tr|B8BCX6|B8BCX6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_30378 PE=4 SV=1
Length = 330
Score = 285 bits (730), Expect = 1e-75
Identities = 151/212 (71%), Positives = 173/212 (81%), Gaps = 5/212 (2%)
Frame = +1
Query: 28 AMESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNS 207
A VSYQR P VRIRE+KDD+ KFELR+TDASMANALRRV++AEVPT+AIDLVEIE+NS
Sbjct: 4 AAGGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNS 63
Query: 208 SVLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCT-SDQTL 384
SVLNDEFIAHRLGLIPLTSA AM M+FSRDCDACDGDG CE+CSVEF L + T SDQTL
Sbjct: 64 SVLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTL 123
Query: 385 DVTSHDLVASDQQYPVYPVGFLEHTDYSSFEEDP----EPPERRGILIVKLRRGQELKLR 552
+VTS+DL ++D + V PV ++ +P ++RGILIVKLRRGQEL+LR
Sbjct: 124 EVTSNDLRSTDPK--VCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLR 181
Query: 553 AIARKGIGKDHAKWSPAATITFQYEPEIHINE 648
AIARKGIGKDHAKWSPAAT+TF YEPEI INE
Sbjct: 182 AIARKGIGKDHAKWSPAATVTFMYEPEIRINE 213
>tr|A3BW06|A3BW06_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_027228 PE=4 SV=1
Length = 250
Score = 285 bits (730), Expect = 1e-75
Identities = 151/212 (71%), Positives = 173/212 (81%), Gaps = 5/212 (2%)
Frame = +1
Query: 28 AMESVSYQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNS 207
A VSYQR P VRIRE+KDD+ KFELR+TDASMANALRRV++AEVPT+AIDLVEIE+NS
Sbjct: 4 AAGGVSYQRFPRVRIRELKDDYAKFELRDTDASMANALRRVMIAEVPTVAIDLVEIEVNS 63
Query: 208 SVLNDEFIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCT-SDQTL 384
SVLNDEFIAHRLGLIPLTSA AM M+FSRDCDACDGDG CE+CSVEF L + T SDQTL
Sbjct: 64 SVLNDEFIAHRLGLIPLTSAAAMAMRFSRDCDACDGDGSCEYCSVEFHLAARATDSDQTL 123
Query: 385 DVTSHDLVASDQQYPVYPVGFLEHTDYSSFEEDP----EPPERRGILIVKLRRGQELKLR 552
+VTS+DL ++D + V PV ++ +P ++RGILIVKLRRGQEL+LR
Sbjct: 124 EVTSNDLRSTDPK--VCPVDQARAYQHALGGTEPFDTAAAADQRGILIVKLRRGQELRLR 181
Query: 553 AIARKGIGKDHAKWSPAATITFQYEPEIHINE 648
AIARKGIGKDHAKWSPAAT+TF YEPEI INE
Sbjct: 182 AIARKGIGKDHAKWSPAATVTFMYEPEIRINE 213
>tr|Q45NH1|Q45NH1_MEDSA DNA-directed RNA polymerase II third largest
subunit (Fragment) OS=Medicago sativa PE=2 SV=1
Length = 184
Score = 273 bits (698), Expect = 7e-72
Identities = 140/193 (72%), Positives = 164/193 (84%)
Frame = +1
Query: 46 YQRLPTVRIREMKDDFIKFELRNTDASMANALRRVVLAEVPTIAIDLVEIEMNSSVLNDE 225
Y R+P V+IRE+KDD++KFELR+TDAS+ANALRRV+++EVPTIAIDLVEIE+NSSVLNDE
Sbjct: 1 YARMPRVKIRELKDDYMKFELRDTDASVANALRRVMISEVPTIAIDLVEIEVNSSVLNDE 60
Query: 226 FIAHRLGLIPLTSARAMDMKFSRDCDACDGDGKCEFCSVEFTLNVKCTSDQTLDVTSHDL 405
FIAHRLGLIPLTS RAM M+FSRDCDACDGDG+CE+CSVEF L VKC +DQTLDV+S DL
Sbjct: 61 FIAHRLGLIPLTSERAMAMRFSRDCDACDGDGQCEYCSVEFHLRVKCITDQTLDVSSKDL 120
Query: 406 VASDQQYPVYPVGFLEHTDYSSFEEDPEPPERRGILIVKLRRGQELKLRAIARKGIGKDH 585
++SD + V PV D + E + RGI+IVKLRRGQEL+LRAIARKGIGKDH
Sbjct: 121 ISSD--HTVTPV------DVPGGDASVE-SDGRGIIIVKLRRGQELRLRAIARKGIGKDH 171
Query: 586 AKWSPAATITFQY 624
AKWSPAAT+TF Y
Sbjct: 172 AKWSPAATVTFMY 184
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