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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK951180
Clone id TST38A01NGRL0010_L09
Library
Length 606
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_L09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence 
TCTAGCTCGAGATTGATTGAAAAACCATTTAGACTATTGTGGATGTGACGCTCACATTAA
AATAGGGTACTCACGGGTTGCATTGTGCATTGTTTGAAAGCATAGAAAGGAGGTTCGAAG
CAACATTCAAAGTGTAATGGACATAGATGTATTGTTTGTGCCGTCCCATGATCGCATAAG
AATTGTGAATAGACAGGTGCAAGATCCGAAAAATGCAGCCAAAAATTTACATATACAGCT
TAGGGAGGCAAATGATGTGGCATCTTTCTAGGAGCTCCCCCTATAGGAGCTACTGTGTAT
CCTTTGTGTGCTCATGCACATTCCATTGCGGTTTCACAGTCAAAATGCATTACCCACTAT
TGTCTTTTTTTCTCCCCCCCCCGTTGATGTGCCTGTCCCAACATAAACAAAGACAGAGAC
TCCATTGAATACCCATGGTGCAGAGAAGCTGACGACCATAGGGTCTCTACATCCTGCTTT
AGCTTCATCTTAGTTTGGAGGCTCATATGCTGTCTCTTTCTCCGAGCCACCCCCATCCCA
TTATGCTTCGACTTTTGATGGGTTTTCAAGCTATCAGCCACCCACCCCATTGCCCCTTAC
ATTGCC
■■Homology search results ■■ -
sp_hit_id O35889
Definition sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus
Align length 23
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951180|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L09, 5'
         (606 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1      32   3.3  
sp|Q034Y9|RS3_LACC3 30S ribosomal protein S3 OS=Lactobacillus ca...    31   4.3  
sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=2         30   7.3  
sp|Q05098|PFEA_PSEAE Ferric enterobactin receptor OS=Pseudomonas...    30   9.5  
sp|P78380|OLR1_HUMAN Oxidized low-density lipoprotein receptor 1...    30   9.5  

>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1
          Length = 1829

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +2

Query: 527  PPPSHYASTFDGFSSYQPPTPLP 595
            PPP+HY S FDG S   P  P P
Sbjct: 1377 PPPAHYTSDFDGISMDLPLPPPP 1399


>sp|Q034Y9|RS3_LACC3 30S ribosomal protein S3 OS=Lactobacillus casei
           (strain ATCC 334) GN=rpsC PE=3 SV=1
          Length = 220

 Score = 31.2 bits (69), Expect = 4.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -2

Query: 578 ADSLKTHQKSKHNGMGVARRKRQHMSLQTKMKLKQDVETLWSSASLHHG 432
           A  +KT    + NG  +ARR+  +  L     L+ D++  W  A+  +G
Sbjct: 145 AKGIKTQASGRLNGADIARREHYNEGLVPLHTLRADIDYAWEEAATTYG 193


>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=2
          Length = 1816

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 527  PPPSHYASTFDGFSSYQPPTPLP 595
            PPP HYA  FDG S   P  P P
Sbjct: 1353 PPPVHYAGDFDGMSMDLPLPPPP 1375


>sp|Q05098|PFEA_PSEAE Ferric enterobactin receptor OS=Pseudomonas
           aeruginosa GN=pfeA PE=2 SV=1
          Length = 746

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 577 LIA*KPIKSRSIMGWGWLGERDS 509
           L+  KP+ SR+ + +GW GERDS
Sbjct: 112 LVDGKPVSSRNSVRYGWRGERDS 134


>sp|P78380|OLR1_HUMAN Oxidized low-density lipoprotein receptor 1
           OS=Homo sapiens GN=OLR1 PE=1 SV=1
          Length = 273

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = -2

Query: 563 THQKSKHNGMGVARRKRQHMSLQTKMKLKQDVETL 459
           THQK K  G   AR++ +  S +++ +LK+ +ETL
Sbjct: 75  THQKKKLEGQISARQQAEEASQESENELKEMIETL 109
tr_hit_id Q5TPN8
Definition tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae
Align length 53
Score (bit) 33.5
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK951180|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L09, 5'
         (606 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae GN=AGA...    33   9.8  

>tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae
           GN=AGAP010326 PE=3 SV=2
          Length = 267

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = -1

Query: 225 FLAAFFGSCTCLFTILMRSWDG----TNNTSMSITL*MLLRTSFLCFQTMHNA 79
           FLA FFG+   LF   M S DG    T+N S  IT  M++  +F+ F     A
Sbjct: 18  FLAEFFGTAMLLFGGCMASIDGFDNVTSNISRGITFGMVVMMAFITFSASSGA 70