DK951180
Clone id TST38A01NGRL0010_L09
Library
Length 606
Definition Adiantum capillus-veneris mRNA. clone: TST38A01NGRL0010_L09. 5' end sequence.
Accession
Tissue type prothallia
Developmental stage gametophyte
Contig ID
Sequence
TCTAGCTCGAGATTGATTGAAAAACCATTTAGACTATTGTGGATGTGACGCTCACATTAA
AATAGGGTACTCACGGGTTGCATTGTGCATTGTTTGAAAGCATAGAAAGGAGGTTCGAAG
CAACATTCAAAGTGTAATGGACATAGATGTATTGTTTGTGCCGTCCCATGATCGCATAAG
AATTGTGAATAGACAGGTGCAAGATCCGAAAAATGCAGCCAAAAATTTACATATACAGCT
TAGGGAGGCAAATGATGTGGCATCTTTCTAGGAGCTCCCCCTATAGGAGCTACTGTGTAT
CCTTTGTGTGCTCATGCACATTCCATTGCGGTTTCACAGTCAAAATGCATTACCCACTAT
TGTCTTTTTTTCTCCCCCCCCCGTTGATGTGCCTGTCCCAACATAAACAAAGACAGAGAC
TCCATTGAATACCCATGGTGCAGAGAAGCTGACGACCATAGGGTCTCTACATCCTGCTTT
AGCTTCATCTTAGTTTGGAGGCTCATATGCTGTCTCTTTCTCCGAGCCACCCCCATCCCA
TTATGCTTCGACTTTTGATGGGTTTTCAAGCTATCAGCCACCCACCCCATTGCCCCTTAC
ATTGCC
■■Homology search results ■■ -
sp_hit_id O35889
Definition sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus
Align length 23
Score (bit) 31.6
E-value 3.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951180|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L09, 5'
(606 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1 32 3.3
sp|Q034Y9|RS3_LACC3 30S ribosomal protein S3 OS=Lactobacillus ca... 31 4.3
sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=2 30 7.3
sp|Q05098|PFEA_PSEAE Ferric enterobactin receptor OS=Pseudomonas... 30 9.5
sp|P78380|OLR1_HUMAN Oxidized low-density lipoprotein receptor 1... 30 9.5

>sp|O35889|AFAD_RAT Afadin OS=Rattus norvegicus GN=Mllt4 PE=1 SV=1
Length = 1829

Score = 31.6 bits (70), Expect = 3.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +2

Query: 527 PPPSHYASTFDGFSSYQPPTPLP 595
PPP+HY S FDG S P P P
Sbjct: 1377 PPPAHYTSDFDGISMDLPLPPPP 1399


>sp|Q034Y9|RS3_LACC3 30S ribosomal protein S3 OS=Lactobacillus casei
(strain ATCC 334) GN=rpsC PE=3 SV=1
Length = 220

Score = 31.2 bits (69), Expect = 4.3
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = -2

Query: 578 ADSLKTHQKSKHNGMGVARRKRQHMSLQTKMKLKQDVETLWSSASLHHG 432
A +KT + NG +ARR+ + L L+ D++ W A+ +G
Sbjct: 145 AKGIKTQASGRLNGADIARREHYNEGLVPLHTLRADIDYAWEEAATTYG 193


>sp|P55196|AFAD_HUMAN Afadin OS=Homo sapiens GN=MLLT4 PE=1 SV=2
Length = 1816

Score = 30.4 bits (67), Expect = 7.3
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +2

Query: 527 PPPSHYASTFDGFSSYQPPTPLP 595
PPP HYA FDG S P P P
Sbjct: 1353 PPPVHYAGDFDGMSMDLPLPPPP 1375


>sp|Q05098|PFEA_PSEAE Ferric enterobactin receptor OS=Pseudomonas
aeruginosa GN=pfeA PE=2 SV=1
Length = 746

Score = 30.0 bits (66), Expect = 9.5
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -3

Query: 577 LIA*KPIKSRSIMGWGWLGERDS 509
L+ KP+ SR+ + +GW GERDS
Sbjct: 112 LVDGKPVSSRNSVRYGWRGERDS 134


>sp|P78380|OLR1_HUMAN Oxidized low-density lipoprotein receptor 1
OS=Homo sapiens GN=OLR1 PE=1 SV=1
Length = 273

Score = 30.0 bits (66), Expect = 9.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -2

Query: 563 THQKSKHNGMGVARRKRQHMSLQTKMKLKQDVETL 459
THQK K G AR++ + S +++ +LK+ +ETL
Sbjct: 75 THQKKKLEGQISARQQAEEASQESENELKEMIETL 109


tr_hit_id Q5TPN8
Definition tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae
Align length 53
Score (bit) 33.5
E-value 9.8
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK951180|Adiantum capillus-veneris mRNA, clone:
TST38A01NGRL0010_L09, 5'
(606 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae GN=AGA... 33 9.8

>tr|Q5TPN8|Q5TPN8_ANOGA AGAP010326-PA OS=Anopheles gambiae
GN=AGAP010326 PE=3 SV=2
Length = 267

Score = 33.5 bits (75), Expect = 9.8
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -1

Query: 225 FLAAFFGSCTCLFTILMRSWDG----TNNTSMSITL*MLLRTSFLCFQTMHNA 79
FLA FFG+ LF M S DG T+N S IT M++ +F+ F A
Sbjct: 18 FLAEFFGTAMLLFGGCMASIDGFDNVTSNISRGITFGMVVMMAFITFSASSGA 70